Wall clock time and date at job start Tue Mar 31 2020 13:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47641 * 2 1 4 4 N 1.30615 * 125.42481 * 90.01716 * 3 2 1 5 5 C 1.33697 * 108.99624 * 180.02562 * 4 3 2 6 6 C 1.50701 * 126.27398 * 180.02562 * 5 4 3 7 7 C 1.36348 * 107.45168 * 0.02562 * 5 4 3 8 8 C 1.46714 * 126.64316 * 180.02562 * 7 5 4 9 9 O 1.21687 * 119.99987 * 359.97438 * 8 7 5 10 10 N 1.34776 * 120.00180 * 180.02562 * 8 7 5 11 11 C 1.46495 * 120.00206 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.49540 * 325.05933 * 11 10 8 13 13 C 1.53619 * 109.43379 * 85.28641 * 11 10 8 14 14 N 1.46935 * 108.54577 * 174.72463 * 13 11 10 15 15 C 1.36938 * 120.62919 * 126.36551 * 14 13 11 16 16 H 1.08000 * 119.99650 * 207.53673 * 15 14 13 17 17 C 1.38809 * 120.00082 * 27.81062 * 15 14 13 18 18 N 1.31614 * 120.00063 * 17.08692 * 17 15 14 19 19 Si 1.86799 * 120.00056 * 197.09336 * 17 15 14 20 20 H 1.48499 * 109.47264 * 89.99441 * 19 17 15 21 21 H 1.48490 * 109.47360 * 210.00275 * 19 17 15 22 22 H 1.48509 * 109.46832 * 329.99885 * 19 17 15 23 23 C 1.46919 * 118.73604 * 306.09471 * 14 13 11 24 24 C 1.53194 * 108.77606 * 53.85685 * 23 14 13 25 25 C 1.53036 * 109.31630 * 305.36313 * 24 23 14 26 26 H 1.09000 * 109.46087 * 301.36203 * 25 24 23 27 27 C 1.52998 * 109.46579 * 181.38551 * 25 24 23 28 28 O 1.33668 * 125.42097 * 270.33552 * 3 2 1 29 29 H 1.08997 * 109.47424 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47569 * 300.00469 * 1 2 3 31 31 H 1.09003 * 109.47016 * 60.00224 * 1 2 3 32 32 H 1.09004 * 109.47275 * 239.99078 * 2 1 3 33 33 H 1.09003 * 109.47016 * 119.99776 * 2 1 3 34 34 H 1.08995 * 109.47011 * 269.95830 * 6 5 4 35 35 H 1.09003 * 109.46587 * 29.96180 * 6 5 4 36 36 H 1.08999 * 109.46814 * 149.95987 * 6 5 4 37 37 H 0.97006 * 119.99574 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.74539 * 54.98508 * 13 11 10 39 39 H 1.09005 * 109.66323 * 294.41768 * 13 11 10 40 40 H 0.97004 * 120.00427 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.58589 * 173.64431 * 23 14 13 42 42 H 1.09001 * 109.58459 * 294.06966 * 23 14 13 43 43 H 1.09000 * 109.49956 * 65.32038 * 24 23 14 44 44 H 1.09004 * 109.49697 * 185.41365 * 24 23 14 45 45 H 1.09001 * 109.46856 * 59.99890 * 27 25 24 46 46 H 1.08995 * 109.47406 * 179.97438 * 27 25 24 47 47 H 1.09002 * 109.46851 * 300.00457 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2851 2.1344 1.0643 5 6 2.7121 3.3436 0.6862 6 6 3.1123 4.4737 1.5994 7 6 2.7189 3.3670 -0.6770 8 6 3.1160 4.4916 -1.5315 9 8 3.4858 5.5365 -1.0292 10 7 3.0702 4.3679 -2.8728 11 6 3.4672 5.4906 -3.7260 12 1 3.1760 6.4282 -3.2524 13 6 4.9898 5.4650 -3.9288 14 7 5.3515 6.5191 -4.8864 15 6 6.3016 7.4531 -4.5698 16 1 6.2661 8.4337 -5.0209 17 6 7.3135 7.1376 -3.6736 18 7 7.5696 5.8789 -3.3867 19 14 8.3117 8.4994 -2.8747 20 1 7.6581 8.9141 -1.6074 21 1 9.6819 8.0049 -2.5863 22 1 8.3887 9.6621 -3.7954 23 6 4.6787 6.5484 -6.1922 24 6 3.1636 6.5585 -5.9661 25 6 2.7752 5.3686 -5.0856 26 1 3.0858 4.4424 -5.5691 27 6 1.2583 5.3556 -4.8861 28 8 2.2847 2.1532 -1.0893 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2401 5.0889 1.8200 35 1 3.5137 4.0661 2.5273 36 1 3.8729 5.0831 1.1113 37 1 2.7751 3.5350 -3.2732 38 1 5.2926 4.4945 -4.3221 39 1 5.4896 5.6482 -2.9776 40 1 8.2770 5.6583 -2.7606 41 1 4.9732 7.4466 -6.7349 42 1 4.9566 5.6645 -6.7662 43 1 2.8757 7.4863 -5.4717 44 1 2.6521 6.4832 -6.9257 45 1 0.7653 5.2676 -5.8542 46 1 0.9815 4.5080 -4.2593 47 1 0.9475 6.2820 -4.4030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968509746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:40 Heat of formation + Delta-G solvation = -32.089939 kcal Electronic energy + Delta-G solvation = -28196.273959 eV Core-core repulsion = 24379.799414 eV Total energy + Delta-G solvation = -3816.474545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.58815 -41.06446 -39.21713 -36.64680 -36.05606 -35.18831 -34.73269 -32.86021 -31.91547 -30.76732 -29.13225 -28.56902 -26.10780 -25.72687 -24.17180 -22.85613 -22.58951 -22.42466 -21.63050 -21.01569 -19.20499 -18.77655 -18.13094 -17.36531 -16.96401 -16.80986 -15.96442 -15.78153 -15.71096 -15.41171 -15.27638 -14.97411 -14.86487 -14.52690 -14.34314 -14.22666 -14.08002 -13.61679 -13.59937 -13.32813 -13.28761 -13.07628 -12.76709 -12.62880 -12.60513 -12.36396 -12.21425 -12.16554 -12.10543 -11.95897 -11.91194 -11.66709 -11.56020 -11.25556 -11.11940 -10.57898 -10.32995 -9.89327 -8.71929 -7.90787 -5.36821 -0.33872 1.22054 1.24798 1.40927 1.46123 1.52018 1.91336 2.07501 2.48447 2.77822 3.25570 3.54215 3.56670 3.74784 3.79891 3.96525 4.11110 4.12388 4.18788 4.20828 4.37746 4.44571 4.52806 4.57341 4.60028 4.63275 4.70768 4.72644 4.89391 4.91763 4.95534 4.96779 5.01810 5.08268 5.14638 5.15464 5.21153 5.24058 5.32841 5.35429 5.41348 5.50830 5.60398 5.72739 6.24253 6.35998 6.50736 6.97568 7.10715 7.82525 8.32033 9.14104 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003967 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.878075 B = 7056.665483 C = 8446.302525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 C 0.231 3.769 4 N -0.508 5.508 5 C 0.073 3.927 6 C -0.079 4.079 7 C -0.134 4.134 8 C 0.602 3.398 9 O -0.546 6.546 10 N -0.693 5.693 11 C 0.140 3.860 12 H 0.060 0.940 13 C 0.179 3.821 14 N -0.608 5.608 15 C -0.263 4.263 16 H 0.070 0.930 17 C -0.050 4.050 18 N -0.932 5.932 19 Si 0.962 3.038 20 H -0.293 1.293 21 H -0.293 1.293 22 H -0.261 1.261 23 C 0.135 3.865 24 C -0.114 4.114 25 C -0.086 4.086 26 H 0.078 0.922 27 C -0.135 4.135 28 O -0.187 6.187 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.411 0.589 38 H -0.002 1.002 39 H 0.046 0.954 40 H 0.247 0.753 41 H 0.057 0.943 42 H 0.021 0.979 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.794 -12.548 2.425 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 C 0.026 3.974 4 N -0.238 5.238 5 C -0.051 4.051 6 C -0.136 4.136 7 C -0.189 4.189 8 C 0.388 3.612 9 O -0.426 6.426 10 N -0.343 5.343 11 C 0.034 3.966 12 H 0.078 0.922 13 C 0.052 3.948 14 N -0.332 5.332 15 C -0.393 4.393 16 H 0.088 0.912 17 C -0.245 4.245 18 N -0.578 5.578 19 Si 0.790 3.210 20 H -0.220 1.220 21 H -0.219 1.219 22 H -0.186 1.186 23 C 0.010 3.990 24 C -0.153 4.153 25 C -0.105 4.105 26 H 0.096 0.904 27 C -0.193 4.193 28 O -0.075 6.075 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.248 0.752 38 H 0.016 0.984 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.483 -12.069 3.357 21.508 hybrid contribution 1.212 0.613 -0.159 1.367 sum -16.272 -11.456 3.198 20.155 Atomic orbital electron populations 1.21787 0.91559 1.04719 1.02353 1.20586 0.97836 0.80800 1.07554 1.27737 0.94245 0.97641 0.77826 1.70365 1.19202 1.03392 1.30812 1.22334 0.96594 0.94649 0.91480 1.20380 1.02787 0.92814 0.97589 1.22675 1.14347 0.86734 0.95182 1.16532 0.77705 0.84636 0.82329 1.90874 1.48948 1.28381 1.74397 1.45787 1.65861 1.17985 1.04655 1.21761 0.96047 0.88051 0.90756 0.92213 1.20874 0.90575 0.89416 0.93980 1.44252 1.43852 1.32734 1.12358 1.19517 1.02856 0.92802 1.24164 0.91207 1.25790 0.98325 0.97751 1.02672 1.70168 1.32812 1.17503 1.37276 0.85346 0.77384 0.79550 0.78732 1.21992 1.21906 1.18567 1.21194 0.92204 0.99048 0.86541 1.21964 0.96102 0.97221 1.00058 1.21285 0.96239 0.99968 0.92977 0.90355 1.21771 0.93245 1.01582 1.02653 1.84421 1.63726 1.21541 1.37776 0.87887 0.92793 0.92454 0.86115 0.85700 0.88882 0.88912 0.90753 0.75201 0.98366 0.93558 0.94418 0.92404 0.96116 0.92814 0.88396 0.90119 0.92455 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 71.98 0.71 -0.65 16 2 C -0.03 -0.35 6.56 29.85 0.20 -0.16 16 3 C 0.23 5.38 7.57 88.29 0.67 6.05 16 4 N -0.51 -14.41 11.26 -291.05 -3.28 -17.69 16 5 C 0.07 2.35 7.16 41.83 0.30 2.65 16 6 C -0.08 -2.31 9.87 71.24 0.70 -1.61 16 7 C -0.13 -4.49 7.18 24.05 0.17 -4.32 16 8 C 0.60 23.25 7.76 86.46 0.67 23.92 16 9 O -0.55 -25.28 14.45 -4.31 -0.06 -25.34 16 10 N -0.69 -23.96 4.36 -445.41 -1.94 -25.90 16 11 C 0.14 5.49 2.08 45.22 0.09 5.58 16 12 H 0.06 2.69 7.57 -2.38 -0.02 2.68 16 13 C 0.18 9.06 4.91 86.50 0.43 9.48 16 14 N -0.61 -31.40 2.99 -698.25 -2.09 -33.48 16 15 C -0.26 -15.06 9.58 84.03 0.81 -14.26 16 16 H 0.07 3.86 7.89 -2.91 -0.02 3.84 16 17 C -0.05 -2.93 4.92 84.86 0.42 -2.52 16 18 N -0.93 -58.17 11.18 21.65 0.24 -57.93 16 19 Si 0.96 47.63 29.59 68.60 2.03 49.66 16 20 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 21 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 23 C 0.13 5.44 6.51 86.36 0.56 6.00 16 24 C -0.11 -3.53 5.36 30.67 0.16 -3.37 16 25 C -0.09 -2.56 2.27 -10.77 -0.02 -2.58 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 C -0.14 -3.10 9.02 71.98 0.65 -2.45 16 28 O -0.19 -5.12 10.57 -7.11 -0.08 -5.19 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 2.58 6.47 -2.39 -0.02 2.56 16 37 H 0.41 11.57 8.11 -92.70 -0.75 10.81 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.05 2.81 6.04 -2.38 -0.01 2.80 16 40 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 42 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.10 2.29 8.14 -2.38 -0.02 2.28 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 1.22 7.36 -2.39 -0.02 1.21 16 47 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -76.49 380.04 1.56 -74.92 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.22 Total: 19.18 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 6.52 Total: 21.77 kcal Atomic # 7 Polarization: -127.94 SS G_CDS: -7.06 Total: -135.00 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.14 Total: -30.53 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -76.49 1.56 -74.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968509746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.833 kcal (2) G-P(sol) polarization free energy of solvation -76.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds