Wall clock time and date at job start Tue Mar 31 2020 12:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47174 * 2 1 4 4 O 1.33491 * 126.83043 * 270.00460 * 3 2 1 5 5 N 1.20665 * 113.15690 * 180.02562 * 4 3 2 6 6 C 1.30014 * 112.29683 * 359.73062 * 5 4 3 7 7 C 1.50706 * 127.33192 * 180.27369 * 6 5 4 8 8 C 1.37358 * 126.82538 * 90.00271 * 3 2 1 9 9 C 1.47397 * 128.56813 * 359.96798 * 8 3 2 10 10 O 1.21601 * 120.00268 * 89.99749 * 9 8 3 11 11 N 1.34782 * 119.99606 * 269.99814 * 9 8 3 12 12 C 1.46499 * 119.99699 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.50016 * 324.93188 * 12 11 9 14 14 C 1.53191 * 109.50136 * 84.99705 * 12 11 9 15 15 N 1.46934 * 108.77292 * 65.31693 * 14 12 11 16 16 C 1.36936 * 120.63057 * 233.58822 * 15 14 12 17 17 H 1.07996 * 120.00034 * 152.23935 * 16 15 14 18 18 C 1.38816 * 120.00045 * 332.24262 * 16 15 14 19 19 N 1.31614 * 120.00327 * 159.79019 * 18 16 15 20 20 Si 1.86806 * 119.99686 * 339.78477 * 18 16 15 21 21 H 1.48501 * 109.46946 * 92.69349 * 20 18 16 22 22 H 1.48496 * 109.46962 * 212.69819 * 20 18 16 23 23 H 1.48503 * 109.47163 * 332.69582 * 20 18 16 24 24 C 1.46929 * 118.73959 * 53.60494 * 15 14 12 25 25 C 1.53187 * 108.89378 * 306.32507 * 24 15 14 26 26 C 1.53041 * 109.49437 * 204.83960 * 12 11 9 27 27 H 1.09007 * 109.45851 * 181.40513 * 26 12 11 28 28 C 1.52998 * 109.46451 * 61.43507 * 26 12 11 29 29 H 1.09000 * 109.47619 * 59.99668 * 1 2 3 30 30 H 1.08999 * 109.47369 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46862 * 299.99278 * 1 2 3 32 32 H 1.09007 * 109.46529 * 240.00037 * 2 1 3 33 33 H 1.08999 * 109.47143 * 120.00554 * 2 1 3 34 34 H 1.09004 * 109.47035 * 270.14836 * 7 6 5 35 35 H 1.08999 * 109.47218 * 30.14928 * 7 6 5 36 36 H 1.08995 * 109.46731 * 150.14856 * 7 6 5 37 37 H 0.96996 * 120.00029 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.58664 * 305.53216 * 14 12 11 39 39 H 1.08994 * 109.58551 * 185.09907 * 14 12 11 40 40 H 0.97001 * 119.99962 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.57866 * 66.17958 * 24 15 14 42 42 H 1.08998 * 109.58542 * 186.46200 * 24 15 14 43 43 H 1.08999 * 109.49764 * 174.65613 * 25 24 15 44 44 H 1.09002 * 109.49878 * 294.74888 * 25 24 15 45 45 H 1.08993 * 109.47129 * 59.99303 * 28 26 12 46 46 H 1.08996 * 109.47519 * 180.02562 * 28 26 12 47 47 H 1.09008 * 109.46693 * 300.00134 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2990 2.1752 -1.0685 5 7 2.6903 3.2805 -0.7832 6 6 2.7504 3.4660 0.5022 7 6 3.1846 4.7144 1.2261 8 6 2.3068 2.1970 1.0995 9 6 2.1824 1.8467 2.5258 10 8 3.1237 1.3507 3.1145 11 7 1.0251 2.0762 3.1776 12 6 0.9016 1.7286 4.5953 13 1 1.4732 0.8231 4.7991 14 6 1.4415 2.8777 5.4525 15 7 0.5811 4.0537 5.2631 16 6 1.1175 5.2586 4.8948 17 1 0.5222 5.9669 4.3378 18 6 2.4263 5.5694 5.2372 19 7 3.0744 6.5060 4.5777 20 14 3.2677 4.6585 6.6343 21 1 4.0099 3.4934 6.0895 22 1 4.2156 5.5723 7.3210 23 1 2.2462 4.1857 7.6031 24 6 -0.8657 3.9123 5.4768 25 6 -1.3828 2.7531 4.6192 26 6 -0.5713 1.4913 4.9365 27 1 -0.6652 1.2571 5.9970 28 6 -1.1046 0.3214 4.1072 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.2597 4.6772 1.4019 35 1 2.9457 5.5879 0.6194 36 1 2.6625 4.7811 2.1805 37 1 0.2744 2.4722 2.7081 38 1 2.4595 3.1164 5.1445 39 1 1.4342 2.5851 6.5024 40 1 3.9891 6.7230 4.8168 41 1 -1.0609 3.7039 6.5288 42 1 -1.3696 4.8343 5.1872 43 1 -2.4356 2.5780 4.8408 44 1 -1.2694 3.0023 3.5641 45 1 -0.5298 -0.5765 4.3338 46 1 -2.1537 0.1525 4.3497 47 1 -1.0103 0.5551 3.0467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968635070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:46 Heat of formation + Delta-G solvation = 35.382645 kcal Electronic energy + Delta-G solvation = -29705.763732 eV Core-core repulsion = 25892.215018 eV Total energy + Delta-G solvation = -3813.548714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.63204 -39.79272 -37.76620 -34.83976 -34.33506 -34.19944 -32.89374 -31.41523 -30.44159 -29.56768 -28.28638 -27.64079 -24.86923 -23.90817 -23.68402 -22.65392 -21.27390 -20.75084 -19.59677 -18.93138 -17.79764 -17.52301 -16.83011 -16.20844 -15.46607 -15.37474 -14.95465 -14.60514 -14.23107 -14.07806 -13.67952 -13.60859 -13.40964 -13.20958 -13.05615 -12.77735 -12.73735 -12.60056 -12.28767 -12.17498 -12.04872 -11.70695 -11.66231 -11.58792 -11.46435 -11.18163 -10.74761 -10.64380 -10.58366 -10.31521 -9.99683 -9.89809 -9.71456 -9.53009 -9.45488 -9.22478 -8.79274 -8.46405 -6.97765 -5.97230 -3.33201 1.47511 2.21925 2.77294 3.04436 3.38979 3.49915 3.51181 3.63445 4.38197 4.49802 4.53734 4.84487 4.90349 4.92350 4.95623 5.01056 5.05321 5.14419 5.24585 5.31521 5.39705 5.59520 5.62274 5.68753 5.69998 5.75867 5.80410 5.91424 5.92955 6.00318 6.04351 6.08321 6.11263 6.16289 6.24706 6.26710 6.32635 6.45585 6.56778 6.63932 6.76936 6.83633 6.93500 7.86502 7.94182 8.29392 8.47079 8.55944 8.90966 9.70335 10.07487 11.17570 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011729 B = 0.006470 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.611287 B = 4326.496182 C = 5719.049434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C 0.003 3.997 4 O 0.090 5.910 5 N -0.365 5.365 6 C 0.071 3.929 7 C -0.080 4.080 8 C -0.238 4.238 9 C 0.602 3.398 10 O -0.535 6.535 11 N -0.686 5.686 12 C 0.134 3.866 13 H 0.082 0.918 14 C 0.112 3.888 15 N -0.601 5.601 16 C -0.260 4.260 17 H 0.085 0.915 18 C 0.031 3.969 19 N -0.902 5.902 20 Si 0.872 3.128 21 H -0.284 1.284 22 H -0.304 1.304 23 H -0.272 1.272 24 C 0.145 3.855 25 C -0.131 4.131 26 C -0.094 4.094 27 H 0.080 0.920 28 C -0.145 4.145 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.400 0.600 38 H 0.081 0.919 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.023 0.977 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.640 -13.391 -6.610 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.060 4.060 4 O 0.030 5.970 5 N -0.073 5.073 6 C -0.091 4.091 7 C -0.138 4.138 8 C -0.245 4.245 9 C 0.386 3.614 10 O -0.412 6.412 11 N -0.336 5.336 12 C 0.028 3.972 13 H 0.100 0.900 14 C -0.014 4.014 15 N -0.325 5.325 16 C -0.388 4.388 17 H 0.102 0.898 18 C -0.168 4.168 19 N -0.545 5.545 20 Si 0.702 3.298 21 H -0.212 1.212 22 H -0.232 1.232 23 H -0.197 1.197 24 C 0.019 3.981 25 C -0.170 4.170 26 C -0.113 4.113 27 H 0.098 0.902 28 C -0.202 4.202 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.236 0.764 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.567 -12.865 -7.249 16.592 hybrid contribution 0.305 -0.394 1.351 1.440 sum -7.262 -13.259 -5.899 16.227 Atomic orbital electron populations 1.21804 0.93145 1.02808 1.02970 1.20171 0.96848 0.86216 1.04943 1.24523 0.99795 0.96227 0.85500 1.84491 1.61932 1.17662 1.32906 1.73605 1.18407 0.98400 1.16935 1.25065 0.98727 0.96780 0.88509 1.20343 1.02554 0.89750 1.01105 1.22029 1.11787 0.95448 0.95233 1.16773 0.82914 0.77967 0.83794 1.90793 1.38151 1.44423 1.67862 1.45752 1.14358 1.62428 1.11102 1.21558 0.96007 0.98827 0.80800 0.90028 1.21790 0.96340 0.87349 0.95948 1.44295 1.01399 1.06164 1.80614 1.18821 0.97262 0.93289 1.29433 0.89777 1.25216 0.96935 0.96460 0.98227 1.69798 1.11100 1.33597 1.40009 0.87111 0.79284 0.78621 0.84774 1.21177 1.23228 1.19717 1.20948 0.85225 0.96121 0.95758 1.22137 0.98161 0.95806 1.00900 1.21368 0.94040 0.95421 1.00470 0.90175 1.21856 1.00427 0.97795 1.00132 0.91862 0.91124 0.91963 0.89001 0.88516 0.90212 0.90417 0.87067 0.76445 0.90064 0.94960 0.92819 0.95940 0.91851 0.92202 0.92338 0.92935 0.92829 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.04 -0.43 6.38 -27.89 -0.18 -0.60 16 3 C 0.00 0.05 6.80 -34.63 -0.24 -0.19 16 4 O 0.09 1.38 11.06 18.65 0.21 1.59 16 5 N -0.37 -6.38 12.01 34.78 0.42 -5.96 16 6 C 0.07 1.30 7.59 -79.76 -0.61 0.70 16 7 C -0.08 -1.54 10.49 36.01 0.38 -1.16 16 8 C -0.24 -4.10 6.24 -102.89 -0.64 -4.74 16 9 C 0.60 11.25 7.57 -12.53 -0.09 11.15 16 10 O -0.54 -11.88 16.77 5.28 0.09 -11.79 16 11 N -0.69 -11.40 4.25 -54.77 -0.23 -11.63 16 12 C 0.13 2.26 2.24 -67.81 -0.15 2.10 16 13 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 14 C 0.11 2.38 3.80 -3.71 -0.01 2.37 16 15 N -0.60 -13.09 2.68 -172.32 -0.46 -13.55 16 16 C -0.26 -6.75 10.03 -15.06 -0.15 -6.90 16 17 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 18 C 0.03 0.86 5.24 -17.43 -0.09 0.77 16 19 N -0.90 -26.09 13.97 55.49 0.78 -25.32 16 20 Si 0.87 22.38 24.34 -169.99 -4.14 18.24 16 21 H -0.28 -7.45 6.62 56.52 0.37 -7.07 16 22 H -0.30 -8.00 7.11 56.52 0.40 -7.59 16 23 H -0.27 -6.82 6.63 56.52 0.37 -6.44 16 24 C 0.15 2.56 6.50 -3.71 -0.02 2.53 16 25 C -0.13 -1.79 5.22 -26.45 -0.14 -1.93 16 26 C -0.09 -1.24 2.48 -90.42 -0.22 -1.47 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 C -0.14 -1.52 9.05 37.16 0.34 -1.18 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.55 7.58 -51.93 -0.39 0.16 16 32 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.11 2.50 8.14 -51.93 -0.42 2.07 16 37 H 0.40 6.15 6.63 -40.82 -0.27 5.88 16 38 H 0.08 2.03 4.51 -51.93 -0.23 1.79 16 39 H 0.03 0.69 7.06 -51.93 -0.37 0.32 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.82 6.41 -51.93 -0.33 0.48 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.55 6.98 -51.92 -0.36 0.18 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -31.10 373.71 -6.63 -37.73 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.45 Total: 4.46 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.47 Total: 0.61 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.50 Total: -56.47 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.29 Total: -10.20 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.10 -6.63 -37.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968635070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.112 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds