Wall clock time and date at job start Tue Mar 31 2020 13:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47084 * 2 1 4 4 O 1.34261 * 126.52262 * 270.03884 * 3 2 1 5 5 C 1.34049 * 108.22819 * 179.97438 * 4 3 2 6 6 N 1.29937 * 109.24063 * 359.74419 * 5 4 3 7 7 C 1.36073 * 108.47700 * 0.40962 * 6 5 4 8 8 C 1.47423 * 126.44751 * 179.85926 * 7 6 5 9 9 O 1.21608 * 120.00140 * 179.68690 * 8 7 6 10 10 N 1.34774 * 119.99939 * 359.68154 * 8 7 6 11 11 C 1.46503 * 119.99889 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46906 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.42671 * 64.94435 * 12 11 10 14 14 C 1.54876 * 109.44558 * 184.87089 * 12 11 10 15 15 C 1.47095 * 110.31908 * 191.29239 * 14 12 11 16 16 C 1.52564 * 114.33428 * 297.19485 * 15 14 12 17 17 C 1.50886 * 109.34980 * 85.02486 * 16 15 14 18 18 C 1.53946 * 110.09485 * 268.11366 * 17 16 15 19 19 N 1.44572 * 109.45340 * 305.00304 * 12 11 10 20 20 C 1.36939 * 118.64530 * 329.26936 * 19 12 11 21 21 H 1.08003 * 119.99253 * 331.90154 * 20 19 12 22 22 C 1.38805 * 120.00246 * 151.90217 * 20 19 12 23 23 N 1.31621 * 120.00167 * 344.14280 * 22 20 19 24 24 Si 1.86808 * 119.99796 * 164.14735 * 22 20 19 25 25 H 1.48499 * 109.46880 * 94.37029 * 24 22 20 26 26 H 1.48502 * 109.46930 * 214.36506 * 24 22 20 27 27 H 1.48493 * 109.47061 * 334.36946 * 24 22 20 28 28 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47328 * 300.00205 * 1 2 3 30 30 H 1.09005 * 109.47286 * 60.00085 * 1 2 3 31 31 H 1.09001 * 109.46910 * 240.00048 * 2 1 3 32 32 H 1.08996 * 109.47108 * 120.00101 * 2 1 3 33 33 H 1.07993 * 125.37887 * 180.02562 * 5 4 3 34 34 H 0.97003 * 120.00391 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.46679 * 60.01081 * 11 10 8 36 36 H 1.08991 * 109.47551 * 300.00812 * 11 10 8 37 37 H 1.09000 * 109.33068 * 311.55360 * 14 12 11 38 38 H 1.09002 * 109.32747 * 71.03622 * 14 12 11 39 39 H 1.08997 * 108.50969 * 175.93596 * 15 14 12 40 40 H 1.09005 * 108.38705 * 58.35700 * 15 14 12 41 41 H 1.08999 * 109.49171 * 325.06310 * 16 15 14 42 42 H 1.08997 * 109.51143 * 204.99821 * 16 15 14 43 43 H 1.08994 * 109.36379 * 147.92506 * 17 16 15 44 44 H 1.08996 * 109.25956 * 28.24027 * 17 16 15 45 45 H 1.08998 * 108.94476 * 279.88121 * 18 17 16 46 46 H 1.08994 * 108.87728 * 161.20149 * 18 17 16 47 47 H 0.97000 * 119.99826 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2980 2.1744 -1.0790 5 6 2.7219 3.3744 -0.6582 6 7 2.7244 3.3963 0.6410 7 6 2.3025 2.1844 1.0935 8 6 2.1589 1.7774 2.5032 9 8 1.7641 0.6601 2.7763 10 7 2.4654 2.6435 3.4892 11 6 2.3222 2.2392 4.8901 12 6 2.7320 3.3990 5.8000 13 1 2.0374 4.2282 5.6654 14 6 2.6983 2.9326 7.2765 15 6 2.8235 4.0869 8.1797 16 6 4.1418 4.8442 8.0530 17 6 4.0346 5.8507 6.9339 18 6 4.5208 5.2269 5.6131 19 7 4.0688 3.8302 5.4579 20 6 4.9522 2.9050 4.9692 21 1 4.8555 1.8662 5.2483 22 6 5.9717 3.3023 4.1151 23 7 5.9171 4.4788 3.5276 24 14 7.4212 2.1670 3.7995 25 1 7.1672 1.3694 2.5729 26 1 8.6531 2.9760 3.6175 27 1 7.5955 1.2532 4.9569 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.0110 4.1951 -1.2979 34 1 2.7801 3.5349 3.2714 35 1 2.9619 1.3789 5.0871 36 1 1.2839 1.9726 5.0870 37 1 1.7555 2.4219 7.4722 38 1 3.5232 2.2431 7.4559 39 1 2.7237 3.7351 9.2065 40 1 2.0063 4.7773 7.9705 41 1 4.9455 4.1412 7.8341 42 1 4.3557 5.3616 8.9881 43 1 4.6476 6.7203 7.1701 44 1 2.9949 6.1596 6.8266 45 1 5.6103 5.2508 5.5904 46 1 4.1367 5.8177 4.7817 47 1 6.6298 4.7566 2.9311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968794338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:32 Heat of formation + Delta-G solvation = -22.746895 kcal Electronic energy + Delta-G solvation = -28880.687815 eV Core-core repulsion = 25064.618415 eV Total energy + Delta-G solvation = -3816.069400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.38831 -40.61948 -39.50115 -36.11141 -35.78537 -35.26668 -34.94126 -33.18757 -32.45630 -30.34197 -28.67841 -27.37849 -25.47977 -25.17296 -24.53035 -23.52333 -22.23321 -21.50792 -20.97819 -20.78427 -19.20400 -17.99551 -17.79736 -17.26886 -17.14942 -16.67425 -16.22538 -15.96517 -15.86506 -15.60707 -15.43911 -15.21357 -14.85365 -14.47859 -14.35994 -14.25134 -13.70417 -13.54792 -13.38902 -13.16543 -12.92585 -12.83459 -12.72437 -12.65171 -12.38303 -12.33351 -12.16071 -12.00656 -11.65255 -11.53878 -11.39088 -11.31913 -11.19301 -11.12365 -10.86024 -10.34782 -10.06012 -9.68847 -8.52069 -7.77498 -5.19764 0.11240 1.15683 1.37018 1.42250 1.47542 1.61265 2.28607 2.46584 2.53196 3.23072 3.37641 3.60605 3.61315 3.89002 4.04899 4.09183 4.10914 4.26315 4.28634 4.35013 4.43613 4.50547 4.59774 4.61499 4.66784 4.78645 4.83363 4.94556 5.01709 5.07777 5.13711 5.14339 5.22021 5.26403 5.27694 5.28513 5.39411 5.43536 5.56562 5.64335 5.69065 5.77353 5.80313 5.90593 6.46338 6.49067 6.78586 7.27696 7.28810 8.02588 8.41595 9.26144 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012908 B = 0.004788 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.625490 B = 5846.944418 C = 6761.236154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.043 4.043 3 C 0.039 3.961 4 O -0.197 6.197 5 C 0.185 3.815 6 N -0.492 5.492 7 C -0.100 4.100 8 C 0.587 3.413 9 O -0.574 6.574 10 N -0.676 5.676 11 C 0.132 3.868 12 C 0.172 3.828 13 H 0.052 0.948 14 C -0.126 4.126 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.132 4.132 18 C 0.192 3.808 19 N -0.587 5.587 20 C -0.235 4.235 21 H 0.048 0.952 22 C -0.026 4.026 23 N -0.911 5.911 24 Si 0.929 3.071 25 H -0.304 1.304 26 H -0.292 1.292 27 H -0.277 1.277 28 H 0.091 0.909 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.301 0.699 34 H 0.411 0.589 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.037 0.963 46 H -0.003 1.003 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.334 -1.583 -3.693 11.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.081 4.081 3 C -0.019 4.019 4 O -0.083 6.083 5 C -0.043 4.043 6 N -0.220 5.220 7 C -0.219 4.219 8 C 0.373 3.627 9 O -0.457 6.457 10 N -0.322 5.322 11 C 0.008 3.992 12 C 0.064 3.936 13 H 0.070 0.930 14 C -0.166 4.166 15 C -0.138 4.138 16 C -0.141 4.141 17 C -0.171 4.171 18 C 0.067 3.933 19 N -0.309 5.309 20 C -0.365 4.365 21 H 0.066 0.934 22 C -0.223 4.223 23 N -0.557 5.557 24 Si 0.760 3.240 25 H -0.232 1.232 26 H -0.219 1.219 27 H -0.203 1.203 28 H 0.109 0.891 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.315 0.685 34 H 0.247 0.753 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.015 0.985 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.327 -1.715 -3.177 10.940 hybrid contribution 1.552 -0.381 -0.914 1.841 sum -8.775 -2.096 -4.091 9.906 Atomic orbital electron populations 1.21649 0.91875 1.03879 1.01777 1.20434 0.98005 0.84080 1.05532 1.24121 0.98400 0.96261 0.83075 1.84364 1.63918 1.24491 1.35568 1.29076 0.97115 0.87257 0.90880 1.70828 1.17477 1.21782 1.11941 1.21583 1.11911 0.92612 0.95754 1.17006 0.77719 0.84383 0.83598 1.90663 1.50407 1.20626 1.83970 1.45617 1.63466 1.17313 1.05848 1.21560 0.99473 0.98234 0.79970 1.20699 0.86608 0.93680 0.92642 0.93046 1.21270 1.01194 0.98429 0.95747 1.20274 0.97169 0.97198 0.99122 1.20905 0.98138 0.97670 0.97342 1.21938 1.00799 0.98147 0.96197 1.20736 0.97356 0.83101 0.92115 1.43738 1.07573 1.05754 1.73828 1.18913 1.07196 0.90269 1.20170 0.93412 1.25291 1.01846 0.97685 0.97502 1.70146 1.32802 1.21260 1.31467 0.85865 0.81703 0.79200 0.77217 1.23205 1.21881 1.20280 0.89059 0.94076 0.91484 0.87285 0.88559 0.68460 0.75265 0.93506 0.91102 0.90682 0.93779 0.91718 0.92156 0.93869 0.91712 0.92038 0.92355 0.94424 0.98517 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.89 71.98 0.71 -2.16 16 2 C -0.04 -1.10 5.93 29.85 0.18 -0.92 16 3 C 0.04 1.23 6.69 25.18 0.17 1.39 16 4 O -0.20 -5.36 10.73 0.35 0.00 -5.36 16 5 C 0.19 4.94 13.19 130.52 1.72 6.66 16 6 N -0.49 -18.48 11.06 -305.15 -3.37 -21.85 16 7 C -0.10 -3.90 6.99 40.41 0.28 -3.61 16 8 C 0.59 25.25 7.81 86.66 0.68 25.93 16 9 O -0.57 -25.20 14.80 -4.06 -0.06 -25.26 16 10 N -0.68 -29.35 4.71 -466.38 -2.20 -31.55 16 11 C 0.13 5.24 4.52 86.38 0.39 5.64 16 12 C 0.17 6.53 2.19 45.99 0.10 6.63 16 13 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 14 C -0.13 -4.05 5.06 29.40 0.15 -3.90 16 15 C -0.10 -2.86 5.16 28.61 0.15 -2.71 16 16 C -0.10 -3.31 5.51 29.76 0.16 -3.15 16 17 C -0.13 -4.59 5.71 30.23 0.17 -4.42 16 18 C 0.19 8.67 4.66 86.49 0.40 9.07 16 19 N -0.59 -26.58 1.77 -674.24 -1.20 -27.78 16 20 C -0.23 -12.16 7.63 84.03 0.64 -11.52 16 21 H 0.05 2.60 6.74 -2.91 -0.02 2.58 16 22 C -0.03 -1.44 4.85 84.86 0.41 -1.03 16 23 N -0.91 -51.28 11.14 21.65 0.24 -51.04 16 24 Si 0.93 46.03 29.58 68.60 2.03 48.06 16 25 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 26 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 27 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.22 16 31 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.10 2.90 6.48 -2.39 -0.02 2.88 16 33 H 0.30 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.41 19.48 7.81 -92.71 -0.72 18.76 16 35 H 0.05 2.06 6.84 -2.39 -0.02 2.05 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 1.60 7.35 -2.38 -0.02 1.58 16 41 H 0.04 1.67 7.48 -2.39 -0.02 1.65 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 1.87 7.31 -2.39 -0.02 1.85 16 45 H 0.04 1.94 6.46 -2.39 -0.02 1.93 16 46 H 0.00 -0.16 8.02 -2.39 -0.02 -0.18 16 47 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -66.91 371.23 2.02 -64.90 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.25 Total: 27.97 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 6.32 Total: 21.91 kcal Atomic # 7 Polarization: -125.69 SS G_CDS: -6.53 Total: -132.22 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.06 Total: -30.62 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -66.91 2.02 -64.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968794338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.148 kcal (2) G-P(sol) polarization free energy of solvation -66.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds