Wall clock time and date at job start Tue Mar 31 2020 13:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47256 * 2 1 4 4 O 1.34265 * 126.52897 * 270.16287 * 3 2 1 5 5 C 1.34046 * 108.22546 * 180.22700 * 4 3 2 6 6 N 1.29929 * 109.24689 * 359.76956 * 5 4 3 7 7 C 1.36067 * 108.48062 * 359.97438 * 6 5 4 8 8 C 1.47418 * 126.45210 * 179.97438 * 7 6 5 9 9 O 1.21614 * 119.99793 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00124 * 0.03280 * 8 7 6 11 11 C 1.46495 * 120.00452 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47585 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.44721 * 295.05294 * 12 11 10 14 14 C 1.54866 * 109.43159 * 175.11893 * 12 11 10 15 15 C 1.47092 * 110.32250 * 168.70959 * 14 12 11 16 16 C 1.52562 * 114.32995 * 62.79972 * 15 14 12 17 17 C 1.50881 * 109.35788 * 274.98951 * 16 15 14 18 18 C 1.54303 * 110.23667 * 91.79844 * 17 16 15 19 19 N 1.44581 * 109.45063 * 55.00093 * 12 11 10 20 20 C 1.36932 * 118.64511 * 30.71622 * 19 12 11 21 21 H 1.08002 * 120.00109 * 28.41483 * 20 19 12 22 22 C 1.38809 * 120.00389 * 208.42116 * 20 19 12 23 23 N 1.31619 * 119.99875 * 15.60376 * 22 20 19 24 24 Si 1.86801 * 120.00255 * 195.60992 * 22 20 19 25 25 H 1.48500 * 109.47129 * 265.61399 * 24 22 20 26 26 H 1.48499 * 109.47324 * 145.61050 * 24 22 20 27 27 H 1.48507 * 109.46861 * 25.61053 * 24 22 20 28 28 H 1.09000 * 109.47255 * 299.99865 * 1 2 3 29 29 H 1.08997 * 109.47216 * 60.00532 * 1 2 3 30 30 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47484 * 239.99647 * 2 1 3 32 32 H 1.09000 * 109.47500 * 120.00175 * 2 1 3 33 33 H 1.08003 * 125.37279 * 179.73328 * 5 4 3 34 34 H 0.97010 * 119.99803 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46997 * 59.99580 * 11 10 8 36 36 H 1.09008 * 109.47137 * 300.00024 * 11 10 8 37 37 H 1.08999 * 109.32458 * 288.96449 * 14 12 11 38 38 H 1.08994 * 109.32627 * 48.61709 * 14 12 11 39 39 H 1.09006 * 108.51136 * 184.05705 * 15 14 12 40 40 H 1.08999 * 108.50778 * 301.69831 * 15 14 12 41 41 H 1.08996 * 109.48958 * 34.95146 * 16 15 14 42 42 H 1.09003 * 109.49069 * 155.02449 * 16 15 14 43 43 H 1.09001 * 109.36673 * 212.07665 * 17 16 15 44 44 H 1.09000 * 109.36622 * 331.69147 * 17 16 15 45 45 H 1.08999 * 109.13374 * 199.01185 * 18 17 16 46 46 H 1.09000 * 108.95827 * 80.26694 * 18 17 16 47 47 H 0.97005 * 120.00092 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2958 2.1752 -1.0789 5 6 2.7260 3.3730 -0.6579 6 7 2.7349 3.3926 0.6412 7 6 2.3018 2.1846 1.0937 8 6 2.1582 1.7775 2.5032 9 8 1.7584 0.6619 2.7762 10 7 2.4699 2.6417 3.4894 11 6 2.3267 2.2374 4.8901 12 6 2.7440 3.3943 5.8002 13 1 3.8063 3.5975 5.6648 14 6 2.4764 3.0109 7.2766 15 6 3.1104 3.9833 8.1799 16 6 2.5684 5.4039 8.0546 17 6 3.2869 6.1163 6.9353 18 6 2.5163 5.9414 5.6099 19 7 1.9809 4.5742 5.4596 20 6 0.7111 4.4165 4.9720 21 1 0.1272 3.5532 5.2551 22 6 0.1742 5.3663 4.1138 23 7 0.9615 6.2420 3.5259 24 14 -1.6658 5.4017 3.7932 25 1 -1.9699 4.6198 2.5679 26 1 -2.1088 6.8067 3.6065 27 1 -2.3814 4.8066 4.9504 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 3.0194 4.1922 -1.2977 34 1 2.7890 3.5316 3.2716 35 1 2.9625 1.3740 5.0859 36 1 1.2873 1.9755 5.0883 37 1 1.4015 2.9986 7.4569 38 1 2.8863 2.0200 7.4719 39 1 2.9660 3.6470 9.2067 40 1 4.1800 4.0035 7.9709 41 1 1.5011 5.3680 7.8368 42 1 2.7313 5.9391 8.9901 43 1 3.3625 7.1776 7.1721 44 1 4.2883 5.7000 6.8259 45 1 3.1863 6.1529 4.7766 46 1 1.6887 6.6503 5.5853 47 1 0.5863 6.9059 2.9265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968794357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:36 Heat of formation + Delta-G solvation = -3.519113 kcal Electronic energy + Delta-G solvation = -28938.204236 eV Core-core repulsion = 25122.968615 eV Total energy + Delta-G solvation = -3815.235621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.14874 -39.01324 -37.91221 -34.65312 -34.44782 -33.87506 -33.35884 -31.61574 -30.62799 -29.08860 -27.04664 -25.70858 -24.16965 -23.43366 -23.28369 -22.06867 -20.93960 -20.00101 -19.52991 -19.11913 -17.75460 -16.56953 -16.24625 -15.73237 -15.54162 -15.19600 -14.64174 -14.61820 -14.26141 -14.25204 -13.95593 -13.50821 -13.30367 -13.28644 -12.76669 -12.73720 -12.48719 -12.04414 -11.90141 -11.63895 -11.47419 -11.23400 -11.08467 -11.05680 -10.95368 -10.80183 -10.55678 -10.34995 -10.17247 -9.99079 -9.94650 -9.65784 -9.59747 -9.50220 -9.35031 -8.70281 -8.35790 -8.10236 -6.62114 -5.75244 -3.19025 1.40377 2.45497 2.79172 3.38028 3.45923 3.48238 3.78757 3.97328 4.39168 4.52593 4.79760 5.09728 5.25301 5.27658 5.35778 5.41413 5.47126 5.50460 5.54868 5.68659 5.71469 5.89250 5.93251 5.97684 6.06032 6.12582 6.18022 6.22527 6.30116 6.31582 6.41232 6.45117 6.60482 6.65648 6.68937 6.74854 6.79352 6.88259 7.03320 7.14287 7.28458 7.45916 7.71922 7.76388 7.88268 8.41138 8.49170 8.92882 9.26754 9.91570 10.37265 11.31391 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.004804 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.100763 B = 5827.631249 C = 6521.502717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C 0.025 3.975 4 O -0.206 6.206 5 C 0.162 3.838 6 N -0.442 5.442 7 C -0.057 4.057 8 C 0.594 3.406 9 O -0.561 6.561 10 N -0.668 5.668 11 C 0.129 3.871 12 C 0.173 3.827 13 H 0.044 0.956 14 C -0.135 4.135 15 C -0.100 4.100 16 C -0.106 4.106 17 C -0.143 4.143 18 C 0.181 3.819 19 N -0.582 5.582 20 C -0.254 4.254 21 H 0.061 0.939 22 C 0.016 3.984 23 N -0.893 5.893 24 Si 0.889 3.111 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.251 0.749 34 H 0.421 0.579 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.048 0.952 44 H 0.043 0.957 45 H 0.025 0.975 46 H 0.072 0.928 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.108 -6.527 -3.736 9.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.031 4.031 4 O -0.093 6.093 5 C -0.067 4.067 6 N -0.170 5.170 7 C -0.177 4.177 8 C 0.378 3.622 9 O -0.442 6.442 10 N -0.316 5.316 11 C 0.004 3.996 12 C 0.064 3.936 13 H 0.062 0.938 14 C -0.176 4.176 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.182 4.182 18 C 0.057 3.943 19 N -0.304 5.304 20 C -0.383 4.383 21 H 0.079 0.921 22 C -0.184 4.184 23 N -0.536 5.536 24 Si 0.719 3.281 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.267 0.733 34 H 0.259 0.741 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.090 0.910 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.003 -6.595 -3.260 8.897 hybrid contribution -1.088 0.421 -0.850 1.444 sum 3.914 -6.174 -4.111 8.387 Atomic orbital electron populations 1.21705 0.93401 1.02457 1.02644 1.20284 0.96910 0.85642 1.04857 1.23706 1.00226 0.95621 0.83548 1.84319 1.64128 1.24403 1.36435 1.27990 1.00048 0.87087 0.91546 1.70884 1.15950 1.20527 1.09628 1.21678 1.09089 0.90974 0.95988 1.16663 0.78205 0.84658 0.82640 1.90697 1.49123 1.20940 1.83424 1.45535 1.63430 1.17418 1.05229 1.21541 1.01508 0.96337 0.80218 1.20507 0.94580 0.87320 0.91208 0.93813 1.21368 1.01380 0.97155 0.97715 1.20288 0.99463 0.95897 0.98159 1.20937 1.02000 0.94655 0.96769 1.22124 0.99032 0.98664 0.98385 1.21054 0.96710 0.86122 0.90453 1.43681 1.13569 0.99086 1.74027 1.18952 0.89785 1.08144 1.21461 0.92106 1.24905 0.97177 0.99691 0.96578 1.70034 1.32745 1.20443 1.30381 0.86504 0.86798 0.76758 0.78045 1.21815 1.21742 1.20565 0.91475 0.92885 0.91399 0.90355 0.86595 0.73328 0.74125 0.93066 0.91211 0.91794 0.93350 0.94131 0.93562 0.90755 0.94266 0.93339 0.93858 0.95684 0.90965 0.93867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 37.16 0.37 -1.50 16 2 C -0.04 -0.53 5.93 -27.89 -0.17 -0.69 16 3 C 0.03 0.41 6.69 -35.08 -0.23 0.17 16 4 O -0.21 -3.00 10.73 6.50 0.07 -2.93 16 5 C 0.16 2.29 13.19 51.96 0.69 2.98 16 6 N -0.44 -8.25 11.06 -11.48 -0.13 -8.38 16 7 C -0.06 -1.09 6.99 -83.02 -0.58 -1.67 16 8 C 0.59 12.38 7.81 -12.52 -0.10 12.28 16 9 O -0.56 -11.97 14.81 5.27 0.08 -11.89 16 10 N -0.67 -14.06 4.71 -61.39 -0.29 -14.35 16 11 C 0.13 2.53 4.52 -4.05 -0.02 2.51 16 12 C 0.17 3.33 2.19 -67.97 -0.15 3.18 16 13 H 0.04 0.84 8.06 -51.93 -0.42 0.42 16 14 C -0.14 -2.30 5.06 -28.58 -0.14 -2.44 16 15 C -0.10 -1.59 5.16 -29.79 -0.15 -1.75 16 16 C -0.11 -1.82 5.51 -28.02 -0.15 -1.97 16 17 C -0.14 -2.59 5.71 -27.11 -0.15 -2.74 16 18 C 0.18 4.02 4.70 -2.76 -0.01 4.00 16 19 N -0.58 -12.93 1.77 -164.25 -0.29 -13.22 16 20 C -0.25 -6.38 7.62 -15.06 -0.11 -6.49 16 21 H 0.06 1.59 6.75 -52.49 -0.35 1.24 16 22 C 0.02 0.42 4.86 -17.43 -0.08 0.34 16 23 N -0.89 -24.17 11.13 55.49 0.62 -23.55 16 24 Si 0.89 21.75 29.58 -169.99 -5.03 16.72 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.12 1.66 6.49 -51.93 -0.34 1.33 16 33 H 0.25 2.18 8.06 -52.48 -0.42 1.76 16 34 H 0.42 9.58 7.81 -40.82 -0.32 9.26 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.50 6.84 -51.92 -0.36 1.14 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.71 7.35 -51.93 -0.38 0.32 16 41 H 0.07 1.47 7.49 -51.93 -0.39 1.08 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.75 7.31 -51.93 -0.38 0.37 16 45 H 0.03 0.61 8.02 -51.93 -0.42 0.19 16 46 H 0.07 1.81 6.46 -51.93 -0.34 1.47 16 47 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 371.27 15.07 5.60 5.60 Total: -1.00 -29.23 371.27 -7.86 -37.09 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.47 Total: 8.72 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.01 Total: 6.20 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.09 Total: -59.50 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.15 Total: -14.83 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.23 -7.86 -37.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968794357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.572 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds