Wall clock time and date at job start Tue Mar 31 2020 13:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47256 * 2 1 4 4 O 1.34265 * 126.52897 * 270.16287 * 3 2 1 5 5 C 1.34046 * 108.22546 * 180.22700 * 4 3 2 6 6 N 1.29929 * 109.24689 * 359.76956 * 5 4 3 7 7 C 1.36067 * 108.48062 * 359.97438 * 6 5 4 8 8 C 1.47418 * 126.45210 * 179.97438 * 7 6 5 9 9 O 1.21614 * 119.99793 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00124 * 0.03280 * 8 7 6 11 11 C 1.46495 * 120.00452 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47585 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.44721 * 295.05294 * 12 11 10 14 14 C 1.54866 * 109.43159 * 175.11893 * 12 11 10 15 15 C 1.47092 * 110.32250 * 168.70959 * 14 12 11 16 16 C 1.52562 * 114.32995 * 62.79972 * 15 14 12 17 17 C 1.50881 * 109.35788 * 274.98951 * 16 15 14 18 18 C 1.54303 * 110.23667 * 91.79844 * 17 16 15 19 19 N 1.44581 * 109.45063 * 55.00093 * 12 11 10 20 20 C 1.36932 * 118.64511 * 30.71622 * 19 12 11 21 21 H 1.08002 * 120.00109 * 28.41483 * 20 19 12 22 22 C 1.38809 * 120.00389 * 208.42116 * 20 19 12 23 23 N 1.31619 * 119.99875 * 15.60376 * 22 20 19 24 24 Si 1.86801 * 120.00255 * 195.60992 * 22 20 19 25 25 H 1.48500 * 109.47129 * 265.61399 * 24 22 20 26 26 H 1.48499 * 109.47324 * 145.61050 * 24 22 20 27 27 H 1.48507 * 109.46861 * 25.61053 * 24 22 20 28 28 H 1.09000 * 109.47255 * 299.99865 * 1 2 3 29 29 H 1.08997 * 109.47216 * 60.00532 * 1 2 3 30 30 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47484 * 239.99647 * 2 1 3 32 32 H 1.09000 * 109.47500 * 120.00175 * 2 1 3 33 33 H 1.08003 * 125.37279 * 179.73328 * 5 4 3 34 34 H 0.97010 * 119.99803 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46997 * 59.99580 * 11 10 8 36 36 H 1.09008 * 109.47137 * 300.00024 * 11 10 8 37 37 H 1.08999 * 109.32458 * 288.96449 * 14 12 11 38 38 H 1.08994 * 109.32627 * 48.61709 * 14 12 11 39 39 H 1.09006 * 108.51136 * 184.05705 * 15 14 12 40 40 H 1.08999 * 108.50778 * 301.69831 * 15 14 12 41 41 H 1.08996 * 109.48958 * 34.95146 * 16 15 14 42 42 H 1.09003 * 109.49069 * 155.02449 * 16 15 14 43 43 H 1.09001 * 109.36673 * 212.07665 * 17 16 15 44 44 H 1.09000 * 109.36622 * 331.69147 * 17 16 15 45 45 H 1.08999 * 109.13374 * 199.01185 * 18 17 16 46 46 H 1.09000 * 108.95827 * 80.26694 * 18 17 16 47 47 H 0.97005 * 120.00092 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2958 2.1752 -1.0789 5 6 2.7260 3.3730 -0.6579 6 7 2.7349 3.3926 0.6412 7 6 2.3018 2.1846 1.0937 8 6 2.1582 1.7775 2.5032 9 8 1.7584 0.6619 2.7762 10 7 2.4699 2.6417 3.4894 11 6 2.3267 2.2374 4.8901 12 6 2.7440 3.3943 5.8002 13 1 3.8063 3.5975 5.6648 14 6 2.4764 3.0109 7.2766 15 6 3.1104 3.9833 8.1799 16 6 2.5684 5.4039 8.0546 17 6 3.2869 6.1163 6.9353 18 6 2.5163 5.9414 5.6099 19 7 1.9809 4.5742 5.4596 20 6 0.7111 4.4165 4.9720 21 1 0.1272 3.5532 5.2551 22 6 0.1742 5.3663 4.1138 23 7 0.9615 6.2420 3.5259 24 14 -1.6658 5.4017 3.7932 25 1 -1.9699 4.6198 2.5679 26 1 -2.1088 6.8067 3.6065 27 1 -2.3814 4.8066 4.9504 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 3.0194 4.1922 -1.2977 34 1 2.7890 3.5316 3.2716 35 1 2.9625 1.3740 5.0859 36 1 1.2873 1.9755 5.0883 37 1 1.4015 2.9986 7.4569 38 1 2.8863 2.0200 7.4719 39 1 2.9660 3.6470 9.2067 40 1 4.1800 4.0035 7.9709 41 1 1.5011 5.3680 7.8368 42 1 2.7313 5.9391 8.9901 43 1 3.3625 7.1776 7.1721 44 1 4.2883 5.7000 6.8259 45 1 3.1863 6.1529 4.7766 46 1 1.6887 6.6503 5.5853 47 1 0.5863 6.9059 2.9265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968794357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:35 Heat of formation + Delta-G solvation = -22.767661 kcal Electronic energy + Delta-G solvation = -28939.038915 eV Core-core repulsion = 25122.968615 eV Total energy + Delta-G solvation = -3816.070300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.38659 -40.61612 -39.49235 -36.10716 -35.78426 -35.26988 -34.94600 -33.17453 -32.45218 -30.35166 -28.67531 -27.37837 -25.49023 -25.16819 -24.53971 -23.52556 -22.23534 -21.50683 -20.97528 -20.78278 -19.20383 -17.97826 -17.81186 -17.25549 -17.15621 -16.68011 -16.22759 -15.95610 -15.87661 -15.60339 -15.43422 -15.20503 -14.86078 -14.49849 -14.38867 -14.21744 -13.70833 -13.56183 -13.38191 -13.16471 -12.92574 -12.83829 -12.73266 -12.68405 -12.38295 -12.32925 -12.18344 -12.01038 -11.65141 -11.53832 -11.38649 -11.31508 -11.18829 -11.12901 -10.86222 -10.34750 -10.05986 -9.68709 -8.51765 -7.77498 -5.19958 0.10979 1.15828 1.36560 1.41808 1.47027 1.61542 2.28370 2.46995 2.53005 3.23204 3.37709 3.60938 3.61459 3.89085 4.05039 4.09351 4.10769 4.24176 4.28452 4.34024 4.43419 4.50850 4.57133 4.61934 4.66675 4.78444 4.82755 4.90724 5.01735 5.07802 5.12850 5.14107 5.21779 5.24127 5.27860 5.28197 5.39590 5.43601 5.56606 5.64487 5.69091 5.77599 5.80391 5.90940 6.46469 6.49127 6.78670 7.27743 7.28871 8.02625 8.41688 9.25934 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.004804 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.100763 B = 5827.631249 C = 6521.502717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.039 4.039 3 C 0.038 3.962 4 O -0.197 6.197 5 C 0.185 3.815 6 N -0.492 5.492 7 C -0.100 4.100 8 C 0.587 3.413 9 O -0.574 6.574 10 N -0.676 5.676 11 C 0.132 3.868 12 C 0.171 3.829 13 H 0.052 0.948 14 C -0.126 4.126 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.132 4.132 18 C 0.191 3.809 19 N -0.586 5.586 20 C -0.235 4.235 21 H 0.048 0.952 22 C -0.026 4.026 23 N -0.910 5.910 24 Si 0.928 3.072 25 H -0.304 1.304 26 H -0.292 1.292 27 H -0.277 1.277 28 H 0.029 0.971 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.301 0.699 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.057 0.943 45 H -0.002 1.002 46 H 0.037 0.963 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.247 -7.505 -3.731 10.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.019 4.019 4 O -0.083 6.083 5 C -0.043 4.043 6 N -0.220 5.220 7 C -0.219 4.219 8 C 0.373 3.627 9 O -0.457 6.457 10 N -0.322 5.322 11 C 0.008 3.992 12 C 0.064 3.936 13 H 0.070 0.930 14 C -0.166 4.166 15 C -0.138 4.138 16 C -0.140 4.140 17 C -0.171 4.171 18 C 0.066 3.934 19 N -0.309 5.309 20 C -0.366 4.366 21 H 0.066 0.934 22 C -0.223 4.223 23 N -0.556 5.556 24 Si 0.760 3.240 25 H -0.232 1.232 26 H -0.219 1.219 27 H -0.203 1.203 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.315 0.685 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.016 0.984 46 H 0.056 0.944 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.145 -7.597 -3.213 10.286 hybrid contribution -1.415 0.685 -0.910 1.817 sum 4.730 -6.911 -4.123 9.335 Atomic orbital electron populations 1.21680 0.93053 1.03819 1.01212 1.20416 0.97019 0.84133 1.06045 1.24145 0.98330 0.96375 0.83060 1.84365 1.63905 1.24481 1.35573 1.29075 0.96951 0.87432 0.90875 1.70823 1.18240 1.21026 1.11947 1.21590 1.12152 0.92354 0.95764 1.17009 0.77647 0.84459 0.83600 1.90663 1.49713 1.21308 1.83992 1.45617 1.63794 1.16982 1.05849 1.21562 1.00473 0.97239 0.79975 1.20703 0.94401 0.85889 0.92648 0.93023 1.21265 1.00493 0.99110 0.95741 1.20277 0.99879 0.94495 0.99122 1.20898 0.99828 0.95988 0.97313 1.21988 0.98982 0.99922 0.96164 1.20815 0.95197 0.85276 0.92072 1.43734 1.12997 1.00167 1.73954 1.18915 0.90827 1.06876 1.19999 0.93439 1.25289 0.99083 1.00418 0.97473 1.70140 1.33119 1.21034 1.31315 0.85875 0.84759 0.76192 0.77223 1.23235 1.21872 1.20274 0.95152 0.91943 0.88698 0.86600 0.87866 0.68468 0.75260 0.91079 0.93549 0.93770 0.90682 0.91729 0.92154 0.93871 0.91721 0.92089 0.92381 0.98433 0.94412 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.89 71.98 0.71 -2.76 16 2 C -0.04 -0.98 5.93 29.84 0.18 -0.81 16 3 C 0.04 1.21 6.69 25.19 0.17 1.37 16 4 O -0.20 -5.34 10.73 0.34 0.00 -5.34 16 5 C 0.19 4.94 13.19 130.52 1.72 6.66 16 6 N -0.49 -18.49 11.06 -305.16 -3.37 -21.86 16 7 C -0.10 -3.89 6.99 40.41 0.28 -3.61 16 8 C 0.59 25.25 7.81 86.66 0.68 25.93 16 9 O -0.57 -25.19 14.81 -4.07 -0.06 -25.25 16 10 N -0.68 -29.36 4.71 -466.38 -2.20 -31.56 16 11 C 0.13 5.24 4.52 86.38 0.39 5.63 16 12 C 0.17 6.53 2.19 45.99 0.10 6.63 16 13 H 0.05 1.91 8.06 -2.39 -0.02 1.90 16 14 C -0.13 -4.04 5.06 29.39 0.15 -3.89 16 15 C -0.10 -2.86 5.16 28.61 0.15 -2.72 16 16 C -0.10 -3.30 5.51 29.76 0.16 -3.14 16 17 C -0.13 -4.58 5.71 30.35 0.17 -4.41 16 18 C 0.19 8.64 4.70 86.61 0.41 9.05 16 19 N -0.59 -26.55 1.77 -673.57 -1.19 -27.74 16 20 C -0.24 -12.20 7.62 84.03 0.64 -11.56 16 21 H 0.05 2.59 6.75 -2.91 -0.02 2.57 16 22 C -0.03 -1.40 4.86 84.86 0.41 -0.99 16 23 N -0.91 -51.20 11.13 21.65 0.24 -50.96 16 24 Si 0.93 46.08 29.58 68.60 2.03 48.11 16 25 H -0.30 -15.63 7.11 99.48 0.71 -14.93 16 26 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 27 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.10 2.91 6.49 -2.39 -0.02 2.90 16 33 H 0.30 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.41 19.49 7.81 -92.70 -0.72 18.76 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.05 2.05 6.84 -2.38 -0.02 2.03 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 39 H 0.06 1.58 8.14 -2.38 -0.02 1.57 16 40 H 0.06 1.60 7.35 -2.39 -0.02 1.58 16 41 H 0.04 1.67 7.49 -2.39 -0.02 1.65 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 1.86 7.31 -2.39 -0.02 1.85 16 45 H 0.00 -0.12 8.02 -2.39 -0.02 -0.14 16 46 H 0.04 1.95 6.46 -2.39 -0.02 1.93 16 47 H 0.24 13.67 8.31 -92.70 -0.77 12.90 16 Total: -1.00 -67.03 371.27 2.03 -65.00 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.25 Total: 28.21 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 6.32 Total: 21.40 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -6.52 Total: -132.12 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.06 Total: -30.59 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -67.03 2.03 -65.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968794357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.231 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds