Wall clock time and date at job start Tue Mar 31 2020 13:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.30010 * 127.33194 * 269.95756 * 3 2 1 5 5 O 1.20657 * 112.30213 * 180.02562 * 4 3 2 6 6 C 1.33500 * 113.15266 * 359.72465 * 5 4 3 7 7 C 1.37351 * 106.34078 * 0.44383 * 6 5 4 8 8 C 1.47408 * 128.56605 * 179.85972 * 7 6 5 9 9 O 1.21603 * 120.00136 * 179.67831 * 8 7 6 10 10 N 1.34779 * 119.99545 * 359.67501 * 8 7 6 11 11 C 1.46500 * 119.99714 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.46981 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.42958 * 64.93927 * 12 11 10 14 14 C 1.54865 * 109.45083 * 184.87033 * 12 11 10 15 15 C 1.47102 * 110.32212 * 191.29244 * 14 12 11 16 16 C 1.52562 * 114.33120 * 297.18982 * 15 14 12 17 17 C 1.50883 * 109.34740 * 85.02514 * 16 15 14 18 18 C 1.53941 * 110.09569 * 268.11185 * 17 16 15 19 19 N 1.44583 * 109.45283 * 305.00302 * 12 11 10 20 20 C 1.36934 * 118.63768 * 329.26842 * 19 12 11 21 21 H 1.07998 * 119.99985 * 331.67004 * 20 19 12 22 22 C 1.38817 * 119.99943 * 151.67640 * 20 19 12 23 23 N 1.31622 * 119.99630 * 344.48854 * 22 20 19 24 24 Si 1.86802 * 120.00025 * 164.49083 * 22 20 19 25 25 H 1.48503 * 109.47111 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46942 * 119.99994 * 24 22 20 27 27 H 1.48499 * 109.47155 * 239.99802 * 24 22 20 28 28 H 1.08994 * 109.47424 * 59.99918 * 1 2 3 29 29 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09013 * 109.46927 * 300.00160 * 1 2 3 31 31 H 1.08999 * 109.47046 * 240.00014 * 2 1 3 32 32 H 1.09003 * 109.47373 * 119.99786 * 2 1 3 33 33 H 1.08000 * 126.82419 * 180.30938 * 6 5 4 34 34 H 0.97000 * 119.99969 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.46632 * 60.00794 * 11 10 8 36 36 H 1.08999 * 109.47441 * 300.00270 * 11 10 8 37 37 H 1.09004 * 109.33215 * 311.55245 * 14 12 11 38 38 H 1.09002 * 109.32892 * 71.03290 * 14 12 11 39 39 H 1.09001 * 108.50620 * 175.93742 * 15 14 12 40 40 H 1.08998 * 108.38357 * 58.35962 * 15 14 12 41 41 H 1.09006 * 109.49125 * 325.07018 * 16 15 14 42 42 H 1.08997 * 109.51134 * 205.00064 * 16 15 14 43 43 H 1.09002 * 109.36621 * 147.91904 * 17 16 15 44 44 H 1.08998 * 109.26321 * 28.24243 * 17 16 15 45 45 H 1.08993 * 108.94742 * 279.87706 * 18 17 16 46 46 H 1.09007 * 108.87271 * 161.19717 * 18 17 16 47 47 H 0.96998 * 119.99575 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2958 2.1639 -1.0338 5 8 2.6845 3.2625 -0.7209 6 6 2.7413 3.4425 0.6007 7 6 2.3296 2.2621 1.1695 8 6 2.2092 1.9237 2.5992 9 8 1.8188 0.8213 2.9324 10 7 2.5319 2.8363 3.5371 11 6 2.4117 2.5002 4.9579 12 6 2.8363 3.7022 5.8039 13 1 2.1398 4.5246 5.6408 14 6 2.8270 3.3079 7.3015 15 6 2.9670 4.5044 8.1457 16 6 4.2831 5.2535 7.9610 17 6 4.1577 6.2047 6.7965 18 6 4.6221 5.5174 5.4997 19 7 4.1675 4.1154 5.4195 20 6 5.0425 3.1668 4.9617 21 1 4.9527 2.1435 5.2951 22 6 6.0451 3.5205 4.0691 23 7 5.9811 4.6687 3.4288 24 14 7.4849 2.3669 3.7766 25 1 7.3216 1.1498 4.6116 26 1 7.5269 1.9812 2.3431 27 1 8.7506 3.0523 4.1420 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0516 4.3376 1.1194 34 1 2.8430 3.7157 3.2713 35 1 3.0545 1.6500 5.1857 36 1 1.3767 2.2444 5.1846 37 1 1.8874 2.8081 7.5372 38 1 3.6546 2.6271 7.5005 39 1 2.8841 4.2027 9.1899 40 1 2.1465 5.1845 7.9169 41 1 5.0831 4.5400 7.7631 42 1 4.5125 5.8153 8.8664 43 1 4.7745 7.0844 6.9803 44 1 3.1163 6.5091 6.6914 45 1 5.7110 5.5393 5.4579 46 1 4.2242 6.0677 4.6470 47 1 6.6819 4.9161 2.8054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969019403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:25 Heat of formation + Delta-G solvation = 16.929338 kcal Electronic energy + Delta-G solvation = -28820.960463 eV Core-core repulsion = 25006.611554 eV Total energy + Delta-G solvation = -3814.348909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.91708 -40.65550 -39.48847 -36.33655 -35.88567 -35.19984 -33.77513 -32.67322 -32.39515 -32.21597 -28.73298 -27.40821 -25.77709 -25.18142 -25.03755 -23.41948 -21.90327 -21.47923 -20.98916 -20.75716 -19.30565 -18.70611 -18.02467 -17.42657 -17.21881 -16.76714 -16.22028 -15.97209 -15.75026 -15.58319 -15.25365 -15.18503 -14.85312 -14.55859 -14.26928 -14.12654 -13.69879 -13.62222 -13.36069 -13.13861 -12.90364 -12.83511 -12.73565 -12.68733 -12.51584 -12.34427 -11.99820 -11.91951 -11.51767 -11.37003 -11.29461 -11.16822 -11.15113 -10.99217 -10.85469 -10.75798 -10.33558 -9.79955 -8.52142 -7.78476 -5.20261 0.12100 0.73552 1.38584 1.47487 1.50553 1.94685 2.25822 2.45497 2.54127 3.00485 3.31442 3.36767 3.63346 3.88992 4.04547 4.08151 4.12110 4.24161 4.30418 4.32263 4.37195 4.47076 4.54210 4.59760 4.65328 4.71189 4.84428 4.88509 4.95048 5.04858 5.11571 5.14743 5.17205 5.25214 5.29050 5.30400 5.42253 5.46279 5.58407 5.64736 5.72120 5.79277 5.83538 5.94286 6.50074 6.69297 7.15748 7.29229 7.30731 8.03286 8.41368 9.24560 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.004692 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.754117 B = 5966.470535 C = 6872.527679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.047 4.047 3 C 0.062 3.938 4 N -0.377 5.377 5 O 0.091 5.909 6 C 0.027 3.973 7 C -0.274 4.274 8 C 0.589 3.411 9 O -0.578 6.578 10 N -0.679 5.679 11 C 0.134 3.866 12 C 0.173 3.827 13 H 0.061 0.939 14 C -0.128 4.128 15 C -0.100 4.100 16 C -0.104 4.104 17 C -0.133 4.133 18 C 0.190 3.810 19 N -0.587 5.587 20 C -0.228 4.228 21 H 0.046 0.954 22 C -0.019 4.019 23 N -0.912 5.912 24 Si 0.919 3.081 25 H -0.284 1.284 26 H -0.304 1.304 27 H -0.294 1.294 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.251 0.749 34 H 0.410 0.590 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.036 0.964 46 H 0.009 0.991 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 1.089 0.925 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.085 4.085 3 C -0.100 4.100 4 N -0.086 5.086 5 O 0.034 5.966 6 C -0.055 4.055 7 C -0.281 4.281 8 C 0.375 3.625 9 O -0.460 6.460 10 N -0.327 5.327 11 C 0.010 3.990 12 C 0.065 3.935 13 H 0.079 0.921 14 C -0.169 4.169 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.172 4.172 18 C 0.065 3.935 19 N -0.309 5.309 20 C -0.359 4.359 21 H 0.064 0.936 22 C -0.215 4.215 23 N -0.558 5.558 24 Si 0.752 3.248 25 H -0.210 1.210 26 H -0.232 1.232 27 H -0.221 1.221 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.266 0.734 34 H 0.246 0.754 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.055 0.945 46 H 0.027 0.973 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.048 0.286 -0.237 10.055 hybrid contribution 1.766 -0.296 0.412 1.837 sum -8.282 -0.010 0.175 8.284 Atomic orbital electron populations 1.21595 0.92377 1.03449 1.01549 1.20091 0.97780 0.86483 1.04146 1.25187 0.98892 0.99584 0.86385 1.73596 1.17796 0.93257 1.23958 1.84522 1.62121 1.26351 1.23595 1.26917 0.94939 1.00580 0.83100 1.22406 1.14145 0.96136 0.95460 1.16964 0.77501 0.84275 0.83711 1.90689 1.49867 1.22839 1.82604 1.45520 1.64388 1.16698 1.06141 1.21509 0.99526 0.98518 0.79454 1.20687 0.86708 0.93774 0.92292 0.92097 1.21288 1.01056 0.98249 0.96311 1.20272 0.97253 0.97034 0.99209 1.20912 0.98061 0.97957 0.97263 1.21951 1.00998 0.98057 0.96211 1.20785 0.97478 0.82758 0.92494 1.43774 1.08391 1.04303 1.74475 1.18950 1.08171 0.90926 1.17887 0.93616 1.25116 1.01345 0.97638 0.97450 1.70060 1.33741 1.23020 1.29001 0.85958 0.82545 0.79824 0.76502 1.20965 1.23175 1.22133 0.92328 0.89556 0.93584 0.88840 0.89682 0.73359 0.75406 0.93807 0.91160 0.90862 0.94069 0.92181 0.91913 0.93982 0.92090 0.92239 0.92041 0.94506 0.97280 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.89 71.98 0.71 -2.40 16 2 C -0.05 -1.31 6.20 29.85 0.18 -1.13 16 3 C 0.06 2.04 6.84 45.16 0.31 2.35 16 4 N -0.38 -12.25 12.01 -44.78 -0.54 -12.79 16 5 O 0.09 2.76 11.06 76.93 0.85 3.61 16 6 C 0.03 0.78 11.85 67.61 0.80 1.58 16 7 C -0.27 -9.36 6.47 -18.75 -0.12 -9.48 16 8 C 0.59 22.28 7.81 86.66 0.68 22.96 16 9 O -0.58 -24.35 15.70 -4.04 -0.06 -24.42 16 10 N -0.68 -24.42 4.71 -466.41 -2.20 -26.62 16 11 C 0.13 4.69 4.52 86.38 0.39 5.08 16 12 C 0.17 5.73 2.19 45.98 0.10 5.83 16 13 H 0.06 1.88 8.06 -2.39 -0.02 1.86 16 14 C -0.13 -3.75 5.06 29.40 0.15 -3.60 16 15 C -0.10 -2.61 5.16 28.61 0.15 -2.46 16 16 C -0.10 -3.08 5.51 29.76 0.16 -2.92 16 17 C -0.13 -4.13 5.71 30.22 0.17 -3.95 16 18 C 0.19 7.54 4.66 86.49 0.40 7.94 16 19 N -0.59 -23.43 1.77 -674.25 -1.20 -24.63 16 20 C -0.23 -10.72 7.62 84.04 0.64 -10.08 16 21 H 0.05 2.32 6.74 -2.91 -0.02 2.30 16 22 C -0.02 -0.92 4.86 84.86 0.41 -0.51 16 23 N -0.91 -45.47 11.14 21.65 0.24 -45.23 16 24 Si 0.92 43.25 29.58 68.60 2.03 45.28 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 2.65 7.11 -2.39 -0.02 2.64 16 33 H 0.25 6.02 7.68 -2.91 -0.02 5.99 16 34 H 0.41 14.67 7.27 -92.71 -0.67 14.00 16 35 H 0.04 1.77 6.84 -2.39 -0.02 1.76 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.07 1.81 8.11 -2.39 -0.02 1.79 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.48 7.35 -2.39 -0.02 1.46 16 41 H 0.04 1.52 7.48 -2.38 -0.02 1.50 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 1.71 7.31 -2.39 -0.02 1.70 16 45 H 0.04 1.73 6.47 -2.39 -0.02 1.71 16 46 H 0.01 0.39 8.02 -2.38 -0.02 0.37 16 47 H 0.25 12.38 8.31 -92.71 -0.77 11.61 16 Total: -1.00 -57.06 371.67 4.57 -52.49 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.30 Total: 23.08 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 5.14 Total: 9.22 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -3.69 Total: -109.26 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.79 Total: -20.81 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -57.06 4.57 -52.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969019403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.423 kcal (2) G-P(sol) polarization free energy of solvation -57.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds