Wall clock time and date at job start Tue Mar 31 2020 13:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47347 * 2 1 4 4 N 1.30625 * 125.42102 * 90.25051 * 3 2 1 5 5 C 1.33684 * 108.99456 * 180.17494 * 4 3 2 6 6 C 1.50706 * 126.27202 * 179.88952 * 5 4 3 7 7 C 1.36339 * 107.45695 * 359.61841 * 5 4 3 8 8 C 1.46724 * 126.64796 * 180.22942 * 7 5 4 9 9 O 1.21687 * 119.99734 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99968 * 180.02562 * 8 7 5 11 11 C 1.46496 * 119.99732 * 179.97438 * 10 8 7 12 12 H 1.09007 * 110.88491 * 34.29940 * 11 10 8 13 13 C 1.54908 * 111.00429 * 270.41734 * 11 10 8 14 14 N 1.47419 * 104.83110 * 278.93182 * 13 11 10 15 15 C 1.36944 * 125.64529 * 155.83358 * 14 13 11 16 16 H 1.08000 * 119.99499 * 180.02562 * 15 14 13 17 17 C 1.38808 * 119.99766 * 0.03081 * 15 14 13 18 18 N 1.31609 * 120.00466 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99685 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46754 * 90.00047 * 19 17 15 21 21 H 1.48496 * 109.46941 * 210.00082 * 19 17 15 22 22 H 1.48501 * 109.46926 * 330.00032 * 19 17 15 23 23 C 1.47021 * 108.70696 * 335.87443 * 14 13 11 24 24 C 1.54424 * 107.27944 * 1.05922 * 23 14 13 25 25 C 1.52998 * 110.72179 * 263.84534 * 24 23 14 26 26 C 1.53002 * 110.76447 * 140.54279 * 24 23 14 27 27 O 1.33664 * 125.42728 * 270.00931 * 3 2 1 28 28 H 1.09002 * 109.46858 * 299.99341 * 1 2 3 29 29 H 1.08995 * 109.47382 * 59.99510 * 1 2 3 30 30 H 1.09000 * 109.47161 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46858 * 240.00659 * 2 1 3 32 32 H 1.08995 * 109.47382 * 120.00490 * 2 1 3 33 33 H 1.09001 * 109.46953 * 269.68074 * 6 5 4 34 34 H 1.09000 * 109.47318 * 29.67672 * 6 5 4 35 35 H 1.09000 * 109.47161 * 149.68302 * 6 5 4 36 36 H 0.97000 * 120.00301 * 359.97438 * 10 8 7 37 37 H 1.08994 * 110.37063 * 37.77430 * 13 11 10 38 38 H 1.09005 * 110.36664 * 160.09957 * 13 11 10 39 39 H 0.97003 * 120.00579 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.88326 * 120.47080 * 23 14 13 41 41 H 1.08997 * 109.88217 * 241.48225 * 23 14 13 42 42 H 1.09000 * 109.46953 * 173.46641 * 25 24 23 43 43 H 1.08999 * 109.47276 * 293.46550 * 25 24 23 44 44 H 1.09001 * 109.47567 * 53.47179 * 25 24 23 45 45 H 1.08998 * 109.46999 * 306.51391 * 26 24 23 46 46 H 1.09001 * 109.46972 * 66.51061 * 26 24 23 47 47 H 1.08994 * 109.47480 * 186.50997 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2892 2.1330 1.0645 5 6 2.7115 3.3438 0.6865 6 6 3.1114 4.4739 1.5998 7 6 2.7199 3.3668 -0.6767 8 6 3.1172 4.4915 -1.5312 9 8 3.4867 5.5364 -1.0287 10 7 3.0730 4.3672 -2.8725 11 6 3.4692 5.4903 -3.7256 12 1 4.2788 6.0591 -3.2680 13 6 2.2578 6.4031 -4.0400 14 7 1.5494 5.7243 -5.1403 15 6 0.2224 5.8704 -5.4453 16 1 -0.2041 5.3261 -6.2749 17 6 -0.5745 6.7181 -4.6882 18 7 -0.0549 7.3810 -3.6769 19 14 -2.3846 6.9179 -5.1047 20 1 -3.1786 5.9095 -4.3577 21 1 -2.8324 8.2816 -4.7240 22 1 -2.5814 6.7214 -6.5634 23 6 2.5032 4.8637 -5.8553 24 6 3.8665 4.9991 -5.1427 25 6 4.7454 6.0341 -5.8477 26 6 4.5760 3.6456 -5.0674 27 8 2.2905 2.1513 -1.0892 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.2390 5.0892 1.8198 34 1 3.5120 4.0665 2.5280 35 1 3.8722 5.0833 1.1121 36 1 2.7789 3.5341 -3.2730 37 1 1.6103 6.4882 -3.1674 38 1 2.5979 7.3885 -4.3587 39 1 -0.6118 7.9731 -3.1476 40 1 2.1672 3.8275 -5.8185 41 1 2.5904 5.1885 -6.8921 42 1 5.6519 6.1983 -5.2651 43 1 5.0122 5.6691 -6.8396 44 1 4.1985 6.9724 -5.9408 45 1 3.9102 2.9112 -4.6141 46 1 4.8455 3.3203 -6.0722 47 1 5.4775 3.7411 -4.4623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977451162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:30 Heat of formation + Delta-G solvation = 2.198513 kcal Electronic energy + Delta-G solvation = -28547.040298 eV Core-core repulsion = 24732.052612 eV Total energy + Delta-G solvation = -3814.987686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.36811 -39.68359 -37.91260 -35.33882 -34.32878 -33.84791 -33.05963 -30.77849 -30.68986 -28.57160 -27.54791 -26.65180 -25.63449 -24.92966 -23.42976 -21.78112 -21.47716 -20.54423 -19.91709 -18.90679 -17.68853 -16.91610 -16.73204 -15.98444 -15.85511 -14.89464 -14.71518 -14.49535 -14.18689 -13.98397 -13.79695 -13.75266 -13.23904 -13.13949 -13.02448 -12.84104 -12.70251 -12.23756 -12.19865 -11.94766 -11.90272 -11.77968 -11.45155 -11.33023 -11.20041 -11.04193 -10.92794 -10.80016 -10.76378 -10.46045 -10.24224 -10.01312 -9.85756 -9.72827 -9.70960 -8.81078 -8.69111 -8.38529 -6.83231 -5.64698 -3.07675 0.95495 2.44218 2.48059 3.37054 3.38732 3.43582 3.46161 3.52118 3.87095 4.47390 4.69473 4.77544 4.87671 4.92746 4.96823 5.14114 5.21079 5.26104 5.48214 5.50674 5.52729 5.56885 5.60634 5.71929 5.75425 5.78969 5.85599 5.91583 5.95958 5.99268 6.03357 6.07126 6.14518 6.23143 6.35018 6.40483 6.46715 6.56290 6.64992 6.68698 6.91956 7.42645 7.58071 7.60886 7.82446 7.92507 8.36517 8.45640 9.20417 9.82001 10.45695 11.38214 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.004733 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.612146 B = 5914.155068 C = 6997.424267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.027 4.027 3 C 0.212 3.788 4 N -0.488 5.488 5 C 0.072 3.928 6 C -0.078 4.078 7 C -0.104 4.104 8 C 0.607 3.393 9 O -0.517 6.517 10 N -0.687 5.687 11 C 0.122 3.878 12 H 0.091 0.909 13 C 0.146 3.854 14 N -0.601 5.601 15 C -0.225 4.225 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.917 5.917 19 Si 0.912 3.088 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.143 3.857 24 C -0.087 4.087 25 C -0.128 4.128 26 C -0.132 4.132 27 O -0.186 6.186 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.401 0.599 37 H 0.113 0.887 38 H 0.024 0.976 39 H 0.253 0.747 40 H 0.021 0.979 41 H 0.025 0.975 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.202 -13.192 4.879 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.065 4.065 3 C 0.006 3.994 4 N -0.218 5.218 5 C -0.052 4.052 6 C -0.135 4.135 7 C -0.159 4.159 8 C 0.391 3.609 9 O -0.395 6.395 10 N -0.336 5.336 11 C 0.017 3.983 12 H 0.109 0.891 13 C 0.020 3.980 14 N -0.327 5.327 15 C -0.353 4.353 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.565 5.565 19 Si 0.743 3.257 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.017 3.983 24 C -0.088 4.088 25 C -0.185 4.185 26 C -0.189 4.189 27 O -0.073 6.073 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.236 0.764 37 H 0.131 0.869 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.199 -12.542 5.804 16.069 hybrid contribution -1.176 -0.072 -1.196 1.679 sum 7.023 -12.613 4.608 15.154 Atomic orbital electron populations 1.21802 0.92747 1.03054 1.03450 1.20134 0.97143 0.83967 1.05271 1.26478 0.97470 0.96656 0.78812 1.70285 1.17815 1.03750 1.29971 1.22005 0.98020 0.93842 0.91356 1.20362 1.03007 0.93071 0.97078 1.23143 1.11410 0.85984 0.95329 1.16225 0.78504 0.84276 0.81849 1.90837 1.48522 1.26307 1.73812 1.45713 1.65551 1.17572 1.04720 1.22647 0.99651 0.87770 0.88241 0.89130 1.22322 0.90190 0.90833 0.94605 1.44456 1.05315 1.49980 1.32958 1.19023 0.83109 1.21714 1.11497 0.90553 1.24786 0.98309 0.99233 0.98122 1.69783 1.34068 1.31929 1.20755 0.86117 0.84861 0.77136 0.77635 1.21723 1.21618 1.20734 1.21432 0.87721 0.94343 0.94839 1.21866 0.96130 0.95563 0.95253 1.21682 0.98514 0.99017 0.99329 1.21724 0.99809 0.96048 1.01350 1.84446 1.63379 1.22228 1.37223 0.91658 0.91720 0.90765 0.88647 0.87504 0.90008 0.90864 0.88580 0.76403 0.86895 0.95848 0.93650 0.96127 0.95706 0.92996 0.92620 0.91657 0.93004 0.92576 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.90 37.16 0.37 -0.92 16 2 C -0.03 -0.24 6.56 -27.88 -0.18 -0.42 16 3 C 0.21 2.91 7.57 -12.79 -0.10 2.81 16 4 N -0.49 -7.57 11.26 -7.07 -0.08 -7.65 16 5 C 0.07 1.19 7.16 -82.47 -0.59 0.60 16 6 C -0.08 -1.11 9.87 36.01 0.36 -0.76 16 7 C -0.10 -1.81 7.18 -36.84 -0.26 -2.08 16 8 C 0.61 11.64 7.79 -12.83 -0.10 11.54 16 9 O -0.52 -10.89 14.48 5.20 0.08 -10.81 16 10 N -0.69 -12.61 4.62 -53.02 -0.24 -12.85 16 11 C 0.12 2.34 2.61 -65.78 -0.17 2.16 16 12 H 0.09 1.72 7.53 -51.92 -0.39 1.33 16 13 C 0.15 3.55 5.27 -2.53 -0.01 3.54 16 14 N -0.60 -14.94 3.39 -170.02 -0.58 -15.52 16 15 C -0.23 -6.20 10.27 -15.06 -0.15 -6.36 16 16 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 17 C -0.01 -0.24 5.49 -17.44 -0.10 -0.34 16 18 N -0.92 -27.13 10.09 55.49 0.56 -26.57 16 19 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 C 0.14 2.84 6.41 -3.01 -0.02 2.82 16 24 C -0.09 -1.43 0.81 -152.62 -0.12 -1.55 16 25 C -0.13 -1.89 8.41 37.16 0.31 -1.58 16 26 C -0.13 -1.75 8.08 37.16 0.30 -1.45 16 27 O -0.19 -2.94 10.57 4.42 0.05 -2.90 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.43 6.47 -51.93 -0.34 1.10 16 36 H 0.40 6.92 6.82 -40.82 -0.28 6.64 16 37 H 0.11 3.22 5.87 -51.93 -0.30 2.91 16 38 H 0.02 0.61 7.80 -51.93 -0.41 0.21 16 39 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.02 0.41 7.77 -51.93 -0.40 0.00 16 41 H 0.03 0.50 7.85 -51.93 -0.41 0.09 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.09 7.57 -51.93 -0.39 0.70 16 45 H 0.05 0.68 6.42 -51.93 -0.33 0.35 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -32.45 378.47 -7.47 -39.92 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.45 Total: 5.43 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -0.48 Total: 8.03 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.34 Total: -62.60 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.12 Total: -13.71 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.45 -7.47 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977451162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.114 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds