Wall clock time and date at job start Tue Mar 31 2020 13:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47347 * 2 1 4 4 N 1.30625 * 125.42102 * 90.25051 * 3 2 1 5 5 C 1.33684 * 108.99456 * 180.17494 * 4 3 2 6 6 C 1.50706 * 126.27202 * 179.88952 * 5 4 3 7 7 C 1.36339 * 107.45695 * 359.61841 * 5 4 3 8 8 C 1.46724 * 126.64796 * 180.22942 * 7 5 4 9 9 O 1.21687 * 119.99734 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99968 * 180.02562 * 8 7 5 11 11 C 1.46496 * 119.99732 * 179.97438 * 10 8 7 12 12 H 1.09007 * 110.88491 * 34.29940 * 11 10 8 13 13 C 1.54908 * 111.00429 * 270.41734 * 11 10 8 14 14 N 1.47419 * 104.83110 * 278.93182 * 13 11 10 15 15 C 1.36944 * 125.64529 * 155.83358 * 14 13 11 16 16 H 1.08000 * 119.99499 * 180.02562 * 15 14 13 17 17 C 1.38808 * 119.99766 * 0.03081 * 15 14 13 18 18 N 1.31609 * 120.00466 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99685 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46754 * 90.00047 * 19 17 15 21 21 H 1.48496 * 109.46941 * 210.00082 * 19 17 15 22 22 H 1.48501 * 109.46926 * 330.00032 * 19 17 15 23 23 C 1.47021 * 108.70696 * 335.87443 * 14 13 11 24 24 C 1.54424 * 107.27944 * 1.05922 * 23 14 13 25 25 C 1.52998 * 110.72179 * 263.84534 * 24 23 14 26 26 C 1.53002 * 110.76447 * 140.54279 * 24 23 14 27 27 O 1.33664 * 125.42728 * 270.00931 * 3 2 1 28 28 H 1.09002 * 109.46858 * 299.99341 * 1 2 3 29 29 H 1.08995 * 109.47382 * 59.99510 * 1 2 3 30 30 H 1.09000 * 109.47161 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46858 * 240.00659 * 2 1 3 32 32 H 1.08995 * 109.47382 * 120.00490 * 2 1 3 33 33 H 1.09001 * 109.46953 * 269.68074 * 6 5 4 34 34 H 1.09000 * 109.47318 * 29.67672 * 6 5 4 35 35 H 1.09000 * 109.47161 * 149.68302 * 6 5 4 36 36 H 0.97000 * 120.00301 * 359.97438 * 10 8 7 37 37 H 1.08994 * 110.37063 * 37.77430 * 13 11 10 38 38 H 1.09005 * 110.36664 * 160.09957 * 13 11 10 39 39 H 0.97003 * 120.00579 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.88326 * 120.47080 * 23 14 13 41 41 H 1.08997 * 109.88217 * 241.48225 * 23 14 13 42 42 H 1.09000 * 109.46953 * 173.46641 * 25 24 23 43 43 H 1.08999 * 109.47276 * 293.46550 * 25 24 23 44 44 H 1.09001 * 109.47567 * 53.47179 * 25 24 23 45 45 H 1.08998 * 109.46999 * 306.51391 * 26 24 23 46 46 H 1.09001 * 109.46972 * 66.51061 * 26 24 23 47 47 H 1.08994 * 109.47480 * 186.50997 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2892 2.1330 1.0645 5 6 2.7115 3.3438 0.6865 6 6 3.1114 4.4739 1.5998 7 6 2.7199 3.3668 -0.6767 8 6 3.1172 4.4915 -1.5312 9 8 3.4867 5.5364 -1.0287 10 7 3.0730 4.3672 -2.8725 11 6 3.4692 5.4903 -3.7256 12 1 4.2788 6.0591 -3.2680 13 6 2.2578 6.4031 -4.0400 14 7 1.5494 5.7243 -5.1403 15 6 0.2224 5.8704 -5.4453 16 1 -0.2041 5.3261 -6.2749 17 6 -0.5745 6.7181 -4.6882 18 7 -0.0549 7.3810 -3.6769 19 14 -2.3846 6.9179 -5.1047 20 1 -3.1786 5.9095 -4.3577 21 1 -2.8324 8.2816 -4.7240 22 1 -2.5814 6.7214 -6.5634 23 6 2.5032 4.8637 -5.8553 24 6 3.8665 4.9991 -5.1427 25 6 4.7454 6.0341 -5.8477 26 6 4.5760 3.6456 -5.0674 27 8 2.2905 2.1513 -1.0892 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.2390 5.0892 1.8198 34 1 3.5120 4.0665 2.5280 35 1 3.8722 5.0833 1.1121 36 1 2.7789 3.5341 -3.2730 37 1 1.6103 6.4882 -3.1674 38 1 2.5979 7.3885 -4.3587 39 1 -0.6118 7.9731 -3.1476 40 1 2.1672 3.8275 -5.8185 41 1 2.5904 5.1885 -6.8921 42 1 5.6519 6.1983 -5.2651 43 1 5.0122 5.6691 -6.8396 44 1 4.1985 6.9724 -5.9408 45 1 3.9102 2.9112 -4.6141 46 1 4.8455 3.3203 -6.0722 47 1 5.4775 3.7411 -4.4623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977451162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:29 Heat of formation + Delta-G solvation = -20.871294 kcal Electronic energy + Delta-G solvation = -28548.040679 eV Core-core repulsion = 24732.052612 eV Total energy + Delta-G solvation = -3815.988068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.57059 -41.22174 -39.46828 -36.56169 -35.69137 -35.18681 -34.56875 -32.63224 -31.85194 -30.15999 -28.82947 -27.92494 -27.41218 -25.98082 -25.01239 -23.18128 -22.56759 -22.05766 -21.48314 -20.35142 -19.07330 -18.73454 -18.12253 -17.53667 -17.01525 -16.64114 -15.97086 -15.80221 -15.77069 -15.40548 -15.30172 -14.88637 -14.68296 -14.34432 -14.20402 -14.16690 -13.77865 -13.70063 -13.60050 -13.28401 -13.04777 -13.02453 -12.90272 -12.65798 -12.64480 -12.59992 -12.18968 -12.14690 -12.10157 -11.95585 -11.82501 -11.80541 -11.50369 -11.39904 -11.22324 -10.78825 -10.23799 -9.83247 -8.86979 -7.77920 -5.22731 -0.31531 1.23567 1.29130 1.42152 1.43745 1.52788 1.93474 2.14056 2.46563 2.79743 3.31834 3.50430 3.58996 3.61812 3.67822 3.93502 4.04069 4.12579 4.17063 4.19569 4.37234 4.40376 4.47735 4.56932 4.63176 4.68962 4.75544 4.81729 4.84993 4.89872 4.91361 4.94467 4.99651 5.00595 5.07771 5.17243 5.21115 5.25595 5.30900 5.31688 5.45330 5.50541 5.60449 5.79504 6.27182 6.29152 6.51497 6.97816 7.07519 7.77087 8.40422 9.22720 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.004733 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.612146 B = 5914.155068 C = 6997.424267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C 0.227 3.773 4 N -0.507 5.507 5 C 0.073 3.927 6 C -0.077 4.077 7 C -0.136 4.136 8 C 0.604 3.396 9 O -0.545 6.545 10 N -0.682 5.682 11 C 0.134 3.866 12 H 0.092 0.908 13 C 0.154 3.846 14 N -0.619 5.619 15 C -0.232 4.232 16 H 0.084 0.916 17 C -0.068 4.068 18 N -0.948 5.948 19 Si 0.975 3.025 20 H -0.289 1.289 21 H -0.297 1.297 22 H -0.266 1.266 23 C 0.138 3.862 24 C -0.073 4.073 25 C -0.125 4.125 26 C -0.125 4.125 27 O -0.192 6.192 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.407 0.593 37 H 0.068 0.932 38 H -0.007 1.007 39 H 0.243 0.757 40 H 0.031 0.969 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.051 0.949 46 H 0.080 0.920 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.919 -16.305 4.230 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 C 0.022 3.978 4 N -0.236 5.236 5 C -0.051 4.051 6 C -0.134 4.134 7 C -0.191 4.191 8 C 0.391 3.609 9 O -0.426 6.426 10 N -0.330 5.330 11 C 0.028 3.972 12 H 0.109 0.891 13 C 0.028 3.972 14 N -0.344 5.344 15 C -0.362 4.362 16 H 0.102 0.898 17 C -0.261 4.261 18 N -0.598 5.598 19 Si 0.804 3.196 20 H -0.216 1.216 21 H -0.224 1.224 22 H -0.191 1.191 23 C 0.013 3.987 24 C -0.074 4.074 25 C -0.183 4.183 26 C -0.182 4.182 27 O -0.079 6.079 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.243 0.757 37 H 0.086 0.914 38 H 0.011 0.989 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.933 -15.698 5.125 18.775 hybrid contribution -1.434 0.804 -0.972 1.910 sum 7.499 -14.894 4.153 17.185 Atomic orbital electron populations 1.21807 0.92378 1.04689 1.01943 1.20561 0.97175 0.80977 1.07784 1.27726 0.94448 0.97764 0.77861 1.70355 1.19121 1.03539 1.30628 1.22392 0.96702 0.94613 0.91363 1.20395 1.02715 0.92549 0.97698 1.22780 1.14307 0.86640 0.95389 1.16462 0.77885 0.84498 0.82097 1.90808 1.49821 1.27610 1.74342 1.45617 1.65508 1.17385 1.04532 1.22371 0.97058 0.87495 0.90267 0.89057 1.21961 0.91359 0.91076 0.92823 1.44685 1.05433 1.50587 1.33740 1.19430 0.84581 1.20992 1.11152 0.89842 1.25611 1.02382 0.99652 0.98416 1.70091 1.35018 1.32776 1.21934 0.85115 0.80023 0.76373 0.78075 1.21600 1.22396 1.19062 1.21666 0.88545 0.93661 0.94848 1.21860 0.95027 0.98154 0.92363 1.21684 0.98484 0.97170 1.00925 1.21689 0.99821 0.93469 1.03230 1.84438 1.63734 1.21783 1.37982 0.92943 0.93445 0.87568 0.85973 0.85082 0.90112 0.88405 0.89555 0.75674 0.91354 0.98870 0.94728 0.95152 0.95294 0.90975 0.90065 0.94502 0.92961 0.90097 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.90 71.98 0.71 -1.45 16 2 C -0.03 -0.39 6.56 29.85 0.20 -0.19 16 3 C 0.23 5.88 7.57 88.29 0.67 6.55 16 4 N -0.51 -15.17 11.26 -291.05 -3.28 -18.44 16 5 C 0.07 2.42 7.16 41.84 0.30 2.72 16 6 C -0.08 -2.20 9.87 71.24 0.70 -1.50 16 7 C -0.14 -4.83 7.18 24.05 0.17 -4.66 16 8 C 0.60 23.85 7.79 86.46 0.67 24.53 16 9 O -0.55 -24.03 14.48 -4.31 -0.06 -24.09 16 10 N -0.68 -25.30 4.62 -439.87 -2.03 -27.33 16 11 C 0.13 5.19 2.61 46.38 0.12 5.31 16 12 H 0.09 3.55 7.53 -2.38 -0.02 3.53 16 13 C 0.15 7.86 5.27 86.86 0.46 8.32 16 14 N -0.62 -31.40 3.39 -691.81 -2.35 -33.75 16 15 C -0.23 -13.01 10.27 84.03 0.86 -12.15 16 16 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 17 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 18 N -0.95 -58.88 10.09 21.65 0.22 -58.66 16 19 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.14 5.35 6.41 86.76 0.56 5.91 16 24 C -0.07 -2.29 0.81 -50.96 -0.04 -2.33 16 25 C -0.13 -3.47 8.41 71.98 0.61 -2.87 16 26 C -0.12 -2.89 8.08 71.98 0.58 -2.31 16 27 O -0.19 -5.92 10.57 -7.11 -0.08 -6.00 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 35 H 0.09 2.66 6.47 -2.39 -0.02 2.64 16 36 H 0.41 13.89 6.82 -92.71 -0.63 13.26 16 37 H 0.07 4.15 5.87 -2.39 -0.01 4.13 16 38 H -0.01 -0.36 7.80 -2.38 -0.02 -0.38 16 39 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.03 1.14 7.77 -2.39 -0.02 1.12 16 41 H 0.03 1.12 7.85 -2.39 -0.02 1.10 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.04 1.22 7.57 -2.39 -0.02 1.20 16 45 H 0.05 1.22 6.42 -2.39 -0.02 1.21 16 46 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -74.53 378.47 1.83 -72.70 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.34 Total: 24.42 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 7.04 Total: 22.40 kcal Atomic # 7 Polarization: -130.75 SS G_CDS: -7.44 Total: -138.19 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.14 Total: -30.09 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.53 1.83 -72.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977451162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.829 kcal (2) G-P(sol) polarization free energy of solvation -74.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds