Wall clock time and date at job start Tue Mar 31 2020 12:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50707 * 109.46824 * 2 1 4 4 O 1.33494 * 126.83133 * 270.02375 * 3 2 1 5 5 N 1.20649 * 113.15872 * 179.73780 * 4 3 2 6 6 C 1.30017 * 112.30482 * 0.02562 * 5 4 3 7 7 C 1.50700 * 127.33955 * 179.97438 * 6 5 4 8 8 C 1.37360 * 126.82662 * 89.70972 * 3 2 1 9 9 C 1.47396 * 128.56530 * 0.23100 * 8 3 2 10 10 O 1.21610 * 120.00535 * 90.00102 * 9 8 3 11 11 N 1.34784 * 119.99541 * 269.99565 * 9 8 3 12 12 C 1.46500 * 119.99631 * 180.02562 * 11 9 8 13 13 H 1.08993 * 110.64474 * 31.85319 * 12 11 9 14 14 C 1.54329 * 110.71572 * 268.51941 * 12 11 9 15 15 N 1.47023 * 107.27081 * 263.83012 * 14 12 11 16 16 C 1.36939 * 125.64619 * 181.02269 * 15 14 12 17 17 H 1.08001 * 119.99436 * 173.94342 * 16 15 14 18 18 C 1.38814 * 120.00090 * 353.94835 * 16 15 14 19 19 N 1.31623 * 120.00052 * 6.82219 * 18 16 15 20 20 Si 1.86793 * 119.99938 * 186.82821 * 18 16 15 21 21 H 1.48503 * 109.47389 * 94.98174 * 20 18 16 22 22 H 1.48502 * 109.47377 * 214.98086 * 20 18 16 23 23 H 1.48506 * 109.47418 * 334.98405 * 20 18 16 24 24 C 1.47421 * 108.70291 * 1.06013 * 15 14 12 25 25 C 1.54901 * 104.83532 * 335.87319 * 24 15 14 26 26 C 1.53001 * 111.00240 * 278.93510 * 25 24 15 27 27 C 1.53003 * 111.00967 * 155.08263 * 25 24 15 28 28 H 1.09002 * 109.47013 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47668 * 299.99826 * 1 2 3 30 30 H 1.08998 * 109.47360 * 60.00624 * 1 2 3 31 31 H 1.08996 * 109.47668 * 240.00174 * 2 1 3 32 32 H 1.08996 * 109.47254 * 119.99906 * 2 1 3 33 33 H 1.08998 * 109.46877 * 90.01935 * 7 6 5 34 34 H 1.08996 * 109.47404 * 210.02480 * 7 6 5 35 35 H 1.09004 * 109.46691 * 330.02306 * 7 6 5 36 36 H 0.96993 * 119.99791 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.88200 * 23.24986 * 14 12 11 38 38 H 1.09004 * 109.88079 * 144.41165 * 14 12 11 39 39 H 0.96996 * 119.99746 * 180.02562 * 19 18 16 40 40 H 1.08996 * 110.36729 * 217.03023 * 24 15 14 41 41 H 1.09003 * 110.36511 * 94.70839 * 24 15 14 42 42 H 1.09003 * 109.47461 * 172.19439 * 26 25 24 43 43 H 1.08995 * 109.47159 * 292.19438 * 26 25 24 44 44 H 1.08995 * 109.47204 * 52.19440 * 26 25 24 45 45 H 1.08995 * 109.46787 * 307.80775 * 27 25 24 46 46 H 1.09001 * 109.46596 * 67.80207 * 27 25 24 47 47 H 1.09000 * 109.47104 * 187.79899 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2985 2.1755 -1.0685 5 7 2.6845 3.2825 -0.7833 6 6 2.7466 3.4675 0.5021 7 6 3.1816 4.7156 1.2260 8 6 2.3013 2.1990 1.0995 9 6 2.1750 1.8494 2.5258 10 8 3.1169 1.3574 3.1171 11 7 1.0155 2.0751 3.1748 12 6 0.8901 1.7282 4.5926 13 1 1.8466 1.8430 5.1023 14 6 0.3481 0.2926 4.7574 15 7 -1.1046 0.3950 4.9594 16 6 -1.9578 -0.6561 5.1655 17 1 -2.9954 -0.4711 5.4010 18 6 -1.4888 -1.9593 5.0720 19 7 -0.2014 -2.1860 4.9188 20 14 -2.6850 -3.3911 5.1633 21 1 -3.0668 -3.8056 3.7894 22 1 -2.0400 -4.5311 5.8631 23 1 -3.8993 -2.9749 5.9101 24 6 -1.4908 1.8166 4.9022 25 6 -0.2030 2.5927 5.2746 26 6 -0.0049 2.6307 6.7913 27 6 -0.2267 4.0070 4.6913 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3164 5.3556 1.3988 34 1 3.6293 4.4439 2.1819 35 1 3.9138 5.2501 0.6207 36 1 0.2641 2.4673 2.7031 37 1 0.5574 -0.2881 3.8591 38 1 0.8103 -0.1810 5.6235 39 1 0.1262 -3.0966 4.8531 40 1 -2.2809 2.0244 5.6237 41 1 -1.8155 2.0814 3.8959 42 1 0.9716 3.0578 7.0196 43 1 -0.7843 3.2433 7.2443 44 1 -0.0607 1.6180 7.1905 45 1 -0.4378 3.9559 3.6232 46 1 -1.0017 4.5915 5.1873 47 1 0.7422 4.4810 4.8482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977576238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:30 Heat of formation + Delta-G solvation = 38.285362 kcal Electronic energy + Delta-G solvation = -29009.374924 eV Core-core repulsion = 25195.952081 eV Total energy + Delta-G solvation = -3813.422843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.84322 -39.77860 -37.93526 -34.76217 -34.52680 -33.89377 -32.99599 -30.74868 -30.31475 -28.89447 -28.15421 -26.90059 -25.68051 -24.83399 -23.68825 -23.06884 -20.84952 -20.18002 -19.68535 -18.83961 -17.72105 -17.60629 -16.74980 -16.25868 -15.86371 -15.04926 -14.74851 -14.34633 -14.02077 -13.92653 -13.83668 -13.61260 -13.49819 -13.29686 -13.16431 -12.97577 -12.58364 -12.47343 -12.10154 -12.02407 -11.73399 -11.57331 -11.48796 -11.42934 -11.12256 -11.02108 -10.86096 -10.81666 -10.47605 -10.31274 -10.08180 -9.96485 -9.92080 -9.78344 -9.68175 -9.33146 -8.66682 -8.51851 -6.85733 -5.74097 -3.07653 1.34686 1.90811 2.67804 2.86167 3.37433 3.43296 3.45460 3.53262 4.10648 4.24282 4.47092 4.85306 4.88865 4.96143 5.14425 5.19196 5.23404 5.27362 5.30173 5.33431 5.44919 5.48071 5.51683 5.60490 5.75321 5.76436 5.88624 5.92600 5.94377 5.98121 6.01715 6.12111 6.15844 6.19871 6.29009 6.34085 6.53096 6.57385 6.63025 6.66381 6.89884 7.48979 7.60838 7.75847 7.84441 8.21318 8.21609 8.46914 9.18319 9.79138 10.44865 11.36992 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.004870 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.214610 B = 5748.158908 C = 7190.426158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C 0.026 3.974 4 O 0.093 5.907 5 N -0.361 5.361 6 C 0.051 3.949 7 C -0.076 4.076 8 C -0.246 4.246 9 C 0.598 3.402 10 O -0.527 6.527 11 N -0.695 5.695 12 C 0.122 3.878 13 H 0.091 0.909 14 C 0.175 3.825 15 N -0.601 5.601 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.916 5.916 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.144 3.856 25 C -0.089 4.089 26 C -0.126 4.126 27 C -0.131 4.131 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.397 0.603 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.253 0.747 40 H 0.041 0.959 41 H 0.015 0.985 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 12.047 -6.946 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.037 4.037 4 O 0.032 5.968 5 N -0.068 5.068 6 C -0.111 4.111 7 C -0.133 4.133 8 C -0.253 4.253 9 C 0.381 3.619 10 O -0.403 6.403 11 N -0.345 5.345 12 C 0.018 3.982 13 H 0.109 0.891 14 C 0.049 3.951 15 N -0.328 5.328 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.200 4.200 19 N -0.563 5.563 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.017 3.983 25 C -0.091 4.091 26 C -0.183 4.183 27 C -0.189 4.189 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.232 0.768 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.033 0.967 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.665 12.186 -7.548 14.795 hybrid contribution -1.030 -0.968 0.469 1.489 sum 2.635 11.218 -7.079 13.524 Atomic orbital electron populations 1.21752 0.92410 1.03676 1.02627 1.20317 0.97448 0.85482 1.05425 1.24780 0.97616 0.96332 0.84967 1.84500 1.61911 1.17281 1.33131 1.73576 1.17844 0.98816 1.16614 1.24714 1.00699 0.96564 0.89097 1.20201 1.02125 0.91261 0.99753 1.22030 1.12598 0.95178 0.95544 1.16780 0.83163 0.78258 0.83685 1.90826 1.38934 1.43265 1.67320 1.45964 1.13672 1.62898 1.11976 1.22564 0.98779 0.97893 0.79002 0.89111 1.21536 0.83638 0.88676 1.01202 1.44419 1.03438 0.99947 1.84961 1.19016 0.91252 0.84226 1.41331 0.90515 1.24794 0.96070 0.97184 1.01989 1.69969 1.11132 1.19291 1.55930 0.86179 0.80044 0.82518 0.77502 1.21686 1.21812 1.20700 1.21627 0.93670 0.85776 0.97194 1.22023 0.96956 0.94054 0.96067 1.21597 1.00401 1.02895 0.93441 1.21675 1.01361 0.95718 1.00108 0.90610 0.91545 0.92363 0.88960 0.87742 0.89749 0.89713 0.90131 0.76789 0.92971 0.93111 0.93691 0.94108 0.96710 0.93307 0.92858 0.91184 0.93136 0.92618 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.89 37.15 0.37 -1.46 16 2 C -0.05 -0.61 6.38 -27.88 -0.18 -0.78 16 3 C 0.03 0.37 6.80 -34.62 -0.24 0.13 16 4 O 0.09 1.29 11.06 18.65 0.21 1.50 16 5 N -0.36 -5.20 12.01 34.78 0.42 -4.78 16 6 C 0.05 0.70 7.59 -79.76 -0.61 0.10 16 7 C -0.08 -0.78 10.49 36.01 0.38 -0.40 16 8 C -0.25 -3.72 6.24 -102.89 -0.64 -4.36 16 9 C 0.60 10.29 7.60 -12.53 -0.10 10.20 16 10 O -0.53 -11.05 16.75 5.27 0.09 -10.97 16 11 N -0.70 -11.17 4.45 -53.11 -0.24 -11.41 16 12 C 0.12 2.20 2.59 -66.09 -0.17 2.03 16 13 H 0.09 1.71 7.45 -51.93 -0.39 1.33 16 14 C 0.17 4.06 4.80 -3.06 -0.01 4.04 16 15 N -0.60 -14.19 3.38 -170.07 -0.57 -14.76 16 16 C -0.23 -6.08 10.26 -15.06 -0.15 -6.23 16 17 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 18 C 0.00 -0.10 5.48 -17.43 -0.10 -0.19 16 19 N -0.92 -26.11 10.36 55.49 0.58 -25.54 16 20 Si 0.91 21.47 29.56 -169.99 -5.02 16.45 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.14 2.69 6.12 -2.54 -0.02 2.68 16 25 C -0.09 -1.40 0.83 -152.36 -0.13 -1.53 16 26 C -0.13 -1.90 8.57 37.16 0.32 -1.58 16 27 C -0.13 -1.60 8.22 37.16 0.31 -1.29 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.51 8.11 -51.93 -0.42 1.09 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.40 5.74 7.10 -40.82 -0.29 5.45 16 37 H 0.05 1.37 7.27 -51.93 -0.38 1.00 16 38 H 0.05 1.35 7.55 -51.93 -0.39 0.96 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 41 H 0.02 0.28 7.98 -51.93 -0.41 -0.14 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.26 7.91 -51.93 -0.41 0.85 16 45 H 0.05 0.58 6.48 -51.93 -0.34 0.25 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -31.07 384.39 -7.37 -38.43 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.64 Total: 3.93 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.97 Total: 1.35 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.18 Total: -56.48 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.29 Total: -9.47 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.07 -7.37 -38.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977576238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.720 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds