Wall clock time and date at job start Tue Mar 31 2020 13:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50693 * 109.47563 * 2 1 4 4 N 1.29937 * 125.38088 * 89.99436 * 3 2 1 5 5 C 1.36069 * 108.48044 * 179.97438 * 4 3 2 6 6 C 1.47418 * 126.45071 * 179.97438 * 5 4 3 7 7 O 1.21605 * 120.00263 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99900 * 0.02719 * 6 5 4 9 9 C 1.46497 * 120.00380 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.49295 * 34.99336 * 9 8 6 11 11 C 1.53039 * 109.49696 * 274.93827 * 9 8 6 12 12 C 1.53108 * 109.49905 * 301.37539 * 11 9 8 13 13 C 1.53197 * 109.33175 * 298.65962 * 12 11 9 14 14 N 1.46918 * 108.77460 * 54.63261 * 13 12 11 15 15 C 1.36941 * 120.62875 * 126.41920 * 14 13 12 16 16 H 1.08009 * 119.99749 * 208.98782 * 15 14 13 17 17 C 1.38813 * 120.00289 * 28.98142 * 15 14 13 18 18 N 1.31618 * 119.99540 * 15.05307 * 17 15 14 19 19 Si 1.86797 * 120.00054 * 195.04703 * 17 15 14 20 20 H 1.48502 * 109.47225 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46840 * 120.00656 * 19 17 15 22 22 H 1.48497 * 109.47146 * 240.00030 * 19 17 15 23 23 C 1.46929 * 118.74251 * 306.39187 * 14 13 12 24 24 H 1.08994 * 109.70197 * 293.75075 * 23 14 13 25 25 C 1.53001 * 109.58477 * 173.39458 * 23 14 13 26 26 C 1.36089 * 107.09846 * 359.97438 * 5 4 3 27 27 C 1.50701 * 126.52121 * 180.02562 * 26 5 4 28 28 O 1.34046 * 125.37881 * 269.69620 * 3 2 1 29 29 H 1.09001 * 109.47428 * 299.99827 * 1 2 3 30 30 H 1.08999 * 109.47113 * 60.00242 * 1 2 3 31 31 H 1.09003 * 109.47440 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47075 * 239.99522 * 2 1 3 33 33 H 1.09003 * 109.46952 * 120.00247 * 2 1 3 34 34 H 0.97006 * 120.00026 * 359.97438 * 8 6 5 35 35 H 1.08992 * 109.46714 * 61.42887 * 11 9 8 36 36 H 1.09001 * 109.46115 * 181.39241 * 11 9 8 37 37 H 1.09001 * 109.48831 * 178.70718 * 12 11 9 38 38 H 1.08998 * 109.51870 * 58.62895 * 12 11 9 39 39 H 1.09004 * 109.58286 * 294.84757 * 13 12 11 40 40 H 1.08999 * 109.58622 * 174.42576 * 13 12 11 41 41 H 0.97000 * 119.99895 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47284 * 300.70981 * 25 23 14 43 43 H 1.08992 * 109.47526 * 60.71565 * 25 23 14 44 44 H 1.09011 * 109.46627 * 180.71521 * 25 23 14 45 45 H 1.09007 * 109.47088 * 90.00118 * 27 26 5 46 46 H 1.08999 * 109.47376 * 209.99834 * 27 26 5 47 47 H 1.08993 * 109.47390 * 330.00492 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2831 2.1300 1.0594 5 6 2.7178 3.3573 0.6638 6 6 3.1117 4.4725 1.5438 7 8 3.4841 5.5250 1.0618 8 7 3.0592 4.3255 2.8825 9 6 3.4512 5.4335 3.7571 10 1 3.1610 6.3789 3.2987 11 6 4.9675 5.4100 3.9629 12 6 5.3792 4.0690 4.5764 13 6 4.7026 3.9067 5.9413 14 7 3.2526 4.0733 5.7731 15 6 2.3834 3.1160 6.2240 16 1 1.4322 2.9755 5.7320 17 6 2.7249 2.3260 7.3131 18 7 3.7264 2.6763 8.0919 19 14 1.7629 0.7659 7.6735 20 1 0.6943 0.5970 6.6561 21 1 2.6787 -0.4021 7.6274 22 1 1.1512 0.8622 9.0232 23 6 2.7528 5.2869 5.1126 24 1 2.9692 6.1577 5.7313 25 6 1.2419 5.1705 4.9013 26 6 2.7203 3.3613 -0.6970 27 6 3.1266 4.5055 -1.5897 28 8 2.2966 2.1505 -1.0929 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.7618 3.4860 3.2670 35 1 5.4664 5.5392 3.0025 36 1 5.2556 6.2196 4.6334 37 1 6.4617 4.0434 4.7017 38 1 5.0698 3.2571 3.9183 39 1 5.0802 4.6639 6.6285 40 1 4.9129 2.9133 6.3376 41 1 3.9648 2.1245 8.8532 42 1 1.0273 4.2963 4.2866 43 1 0.7470 5.0662 5.8667 44 1 0.8752 6.0662 4.3998 45 1 4.1932 4.4381 -1.8041 46 1 2.5647 4.4560 -2.5224 47 1 2.9159 5.4501 -1.0883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993967576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:58 Heat of formation + Delta-G solvation = -25.818211 kcal Electronic energy + Delta-G solvation = -28707.041875 eV Core-core repulsion = 24890.839292 eV Total energy + Delta-G solvation = -3816.202582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.50207 -41.07068 -39.14546 -36.12676 -35.62841 -35.04509 -33.99611 -33.38872 -32.56363 -31.18187 -28.40269 -27.71511 -26.85660 -25.61389 -24.20254 -23.45914 -22.46719 -22.31103 -21.29421 -20.27132 -19.05544 -18.27837 -18.04699 -17.16631 -16.88544 -16.57416 -16.17645 -15.76073 -15.66940 -15.58426 -15.15365 -14.97263 -14.71677 -14.51565 -14.37926 -14.25708 -14.07892 -13.57189 -13.50995 -13.32365 -12.97637 -12.91155 -12.75159 -12.62340 -12.45371 -12.34211 -12.32325 -12.20023 -12.06263 -11.91322 -11.80418 -11.69425 -11.38707 -11.11293 -11.03301 -10.50280 -10.06298 -9.72656 -8.61081 -7.81290 -5.27198 0.02688 0.96326 1.43400 1.46921 1.50078 1.59140 2.18912 2.26028 2.53901 2.88216 3.34678 3.56916 3.58764 3.72316 4.00700 4.05136 4.07976 4.19433 4.23182 4.25019 4.36993 4.37751 4.54142 4.55987 4.58371 4.64675 4.74345 4.88545 4.91828 4.94765 4.97700 5.00450 5.01382 5.08004 5.08951 5.15224 5.20536 5.31751 5.32648 5.43306 5.54946 5.61175 5.74004 5.79552 6.38636 6.44930 6.67666 7.15759 7.20627 7.89845 8.42188 9.25194 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.004937 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.634248 B = 5670.649891 C = 7369.291116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.026 4.026 3 C 0.197 3.803 4 N -0.486 5.486 5 C -0.105 4.105 6 C 0.596 3.404 7 O -0.563 6.563 8 N -0.683 5.683 9 C 0.140 3.860 10 H 0.088 0.912 11 C -0.114 4.114 12 C -0.127 4.127 13 C 0.179 3.821 14 N -0.596 5.596 15 C -0.244 4.244 16 H 0.073 0.927 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.296 1.296 23 C 0.156 3.844 24 H 0.040 0.960 25 C -0.127 4.127 26 C 0.041 3.959 27 C -0.070 4.070 28 O -0.195 6.195 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.410 0.590 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.042 0.958 39 H 0.000 1.000 40 H 0.055 0.945 41 H 0.246 0.754 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 -1.451 -20.092 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.013 4.013 4 N -0.215 5.215 5 C -0.224 4.224 6 C 0.383 3.617 7 O -0.444 6.444 8 N -0.332 5.332 9 C 0.034 3.966 10 H 0.106 0.894 11 C -0.152 4.152 12 C -0.166 4.166 13 C 0.054 3.946 14 N -0.320 5.320 15 C -0.374 4.374 16 H 0.091 0.909 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.786 3.214 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.224 1.224 23 C 0.050 3.950 24 H 0.057 0.943 25 C -0.184 4.184 26 C -0.016 4.016 27 C -0.126 4.126 28 O -0.082 6.082 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.246 0.754 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.018 0.982 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.165 -0.989 -19.632 19.910 hybrid contribution -0.182 -0.973 0.597 1.156 sum -3.347 -1.962 -19.035 19.427 Atomic orbital electron populations 1.21776 0.92197 1.04353 1.02122 1.20393 0.97469 0.81640 1.06865 1.27092 0.98691 0.97881 0.77594 1.70794 1.16357 1.03036 1.31305 1.21578 1.12911 0.94736 0.93180 1.16909 0.77419 0.85264 0.82152 1.90696 1.50180 1.27974 1.75590 1.45825 1.64713 1.18017 1.04629 1.21478 0.94887 0.89412 0.90810 0.89396 1.21731 0.95241 0.97930 1.00300 1.21967 0.99420 0.97016 0.98222 1.20585 0.82736 0.99407 0.91888 1.44315 1.01720 1.18329 1.67663 1.19454 1.00477 1.09909 1.07548 0.90933 1.25718 0.99821 1.02973 0.95858 1.70173 1.32445 1.38734 1.16778 0.85349 0.78338 0.80380 0.77283 1.19044 1.22166 1.22369 1.20865 0.93700 0.89869 0.90595 0.94281 1.21689 0.94713 1.00950 1.01076 1.24215 0.96845 0.86273 0.94220 1.20674 1.03477 0.90550 0.97900 1.84329 1.63942 1.22036 1.37927 0.93669 0.91909 0.88370 0.85873 0.87189 0.75380 0.92351 0.90746 0.91826 0.93939 0.98229 0.92696 0.94454 0.93459 0.93211 0.91528 0.87885 0.87485 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.89 71.98 0.71 -1.36 16 2 C -0.03 -0.41 6.56 29.84 0.20 -0.22 16 3 C 0.20 4.98 7.56 88.39 0.67 5.64 16 4 N -0.49 -15.80 11.06 -293.05 -3.24 -19.04 16 5 C -0.11 -3.44 6.99 40.41 0.28 -3.16 16 6 C 0.60 21.25 7.78 86.66 0.67 21.93 16 7 O -0.56 -20.63 14.46 -4.05 -0.06 -20.69 16 8 N -0.68 -25.19 3.46 -445.44 -1.54 -26.73 16 9 C 0.14 5.06 2.32 45.07 0.10 5.17 16 10 H 0.09 3.04 7.58 -2.39 -0.02 3.02 16 11 C -0.11 -4.01 5.58 30.64 0.17 -3.84 16 12 C -0.13 -5.02 5.93 30.70 0.18 -4.83 16 13 C 0.18 8.61 5.29 86.37 0.46 9.07 16 14 N -0.60 -28.61 2.65 -675.22 -1.79 -30.39 16 15 C -0.24 -12.77 8.61 84.03 0.72 -12.04 16 16 H 0.07 3.72 6.20 -2.91 -0.02 3.71 16 17 C -0.05 -2.66 4.96 84.86 0.42 -2.24 16 18 N -0.93 -54.54 11.14 21.65 0.24 -54.29 16 19 Si 0.96 44.59 29.58 68.60 2.03 46.62 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 22 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 23 C 0.16 6.29 3.20 44.97 0.14 6.44 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 C -0.13 -4.71 7.72 71.98 0.56 -4.16 16 26 C 0.04 1.10 7.44 25.19 0.19 1.28 16 27 C -0.07 -1.32 9.88 71.24 0.70 -0.62 16 28 O -0.19 -4.76 10.73 0.42 0.00 -4.75 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.41 16.63 7.50 -92.70 -0.70 15.94 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.04 1.77 7.53 -2.39 -0.02 1.75 16 39 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.05 3.00 6.06 -2.39 -0.01 2.99 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.05 1.82 6.38 -2.39 -0.02 1.80 16 43 H 0.05 1.97 7.66 -2.39 -0.02 1.95 16 44 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.10 2.22 6.48 -2.39 -0.02 2.21 16 Total: -1.00 -66.27 373.65 2.11 -64.16 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.28 Total: 28.08 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 6.18 Total: 17.05 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -6.33 Total: -130.46 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.27 2.11 -64.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993967576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.338 kcal (2) G-P(sol) polarization free energy of solvation -66.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds