Wall clock time and date at job start Tue Mar 31 2020 12:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50693 * 109.47309 * 2 1 4 4 O 1.33491 * 126.83153 * 269.97681 * 3 2 1 5 5 N 1.20663 * 113.16000 * 180.02562 * 4 3 2 6 6 C 1.30018 * 112.29940 * 359.71630 * 5 4 3 7 7 C 1.50695 * 127.33654 * 180.30044 * 6 5 4 8 8 C 1.37361 * 126.82814 * 90.00021 * 3 2 1 9 9 C 1.47397 * 128.56504 * 359.96242 * 8 3 2 10 10 O 1.21610 * 120.00124 * 89.99796 * 9 8 3 11 11 N 1.34777 * 119.99766 * 269.99642 * 9 8 3 12 12 C 1.46508 * 119.99645 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.49528 * 34.94154 * 12 11 9 14 14 C 1.53031 * 109.47299 * 274.85589 * 12 11 9 15 15 C 1.53050 * 109.53857 * 301.36845 * 14 12 11 16 16 C 1.53190 * 109.33781 * 298.68088 * 15 14 12 17 17 N 1.46930 * 108.77680 * 54.62142 * 16 15 14 18 18 C 1.36933 * 120.62848 * 126.36456 * 17 16 15 19 19 H 1.08001 * 119.99242 * 209.01281 * 18 17 16 20 20 C 1.38803 * 120.00300 * 29.02429 * 18 17 16 21 21 N 1.31619 * 120.00080 * 15.02531 * 20 18 17 22 22 Si 1.86797 * 120.00079 * 195.03160 * 20 18 17 23 23 H 1.48501 * 109.47213 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47373 * 119.99468 * 22 20 18 25 25 H 1.48498 * 109.47465 * 239.99698 * 22 20 18 26 26 C 1.46928 * 118.73706 * 306.39160 * 17 16 15 27 27 H 1.08999 * 109.58454 * 293.81796 * 26 17 16 28 28 C 1.52996 * 109.58605 * 173.39531 * 26 17 16 29 29 H 1.08999 * 109.47375 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46997 * 299.99548 * 1 2 3 31 31 H 1.09000 * 109.47557 * 59.99856 * 1 2 3 32 32 H 1.09003 * 109.46997 * 240.00452 * 2 1 3 33 33 H 1.09006 * 109.47300 * 120.00506 * 2 1 3 34 34 H 1.09001 * 109.47245 * 270.14802 * 7 6 5 35 35 H 1.08996 * 109.47549 * 30.14558 * 7 6 5 36 36 H 1.09005 * 109.47438 * 150.14745 * 7 6 5 37 37 H 0.97000 * 120.00251 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.43777 * 181.36582 * 14 12 11 39 39 H 1.08993 * 109.48689 * 61.40279 * 14 12 11 40 40 H 1.09005 * 109.49270 * 178.71650 * 15 14 12 41 41 H 1.09000 * 109.49752 * 58.65126 * 15 14 12 42 42 H 1.09001 * 109.58629 * 174.40551 * 16 15 14 43 43 H 1.09000 * 109.58741 * 294.69218 * 16 15 14 44 44 H 0.97006 * 120.00073 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47598 * 60.00065 * 28 26 17 46 46 H 1.08997 * 109.47067 * 180.02562 * 28 26 17 47 47 H 1.09001 * 109.47240 * 299.99599 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2995 2.1750 -1.0685 5 7 2.6907 3.2803 -0.7833 6 6 2.7500 3.4662 0.5022 7 6 3.1832 4.7149 1.2260 8 6 2.3068 2.1970 1.0995 9 6 2.1822 1.8468 2.5258 10 8 3.1235 1.3507 3.1146 11 7 1.0249 2.0765 3.1774 12 6 0.9009 1.7278 4.5950 13 1 1.8542 1.8966 5.0959 14 6 0.5082 0.2546 4.7256 15 6 -0.8142 0.0106 3.9947 16 6 -1.9132 0.8633 4.6363 17 7 -1.4785 2.2668 4.6448 18 6 -2.2695 3.2454 4.1047 19 1 -1.8196 4.1334 3.6860 20 6 -3.6495 3.0962 4.0957 21 7 -4.2175 2.1812 4.8523 22 14 -4.7005 4.1940 3.0096 23 1 -3.8267 5.1341 2.2628 24 1 -5.4624 3.3563 2.0487 25 1 -5.6482 4.9646 3.8541 26 6 -0.1788 2.6001 5.2434 27 1 -0.2098 2.4064 6.3156 28 6 0.1368 4.0764 4.9949 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 4.2582 4.6782 1.4025 35 1 2.9444 5.5882 0.6190 36 1 2.6604 4.7817 2.1802 37 1 0.2740 2.4718 2.7077 38 1 0.3924 0.0021 5.7796 39 1 1.2864 -0.3695 4.2863 40 1 -1.0816 -1.0435 4.0688 41 1 -0.7061 0.2857 2.9455 42 1 -2.8328 0.7691 4.0587 43 1 -2.0874 0.5263 5.6582 44 1 -5.1819 2.0767 4.8457 45 1 -0.6390 4.6949 5.4461 46 1 1.1015 4.3215 5.4392 47 1 0.1732 4.2646 3.9219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994392324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:50 Heat of formation + Delta-G solvation = 15.868216 kcal Electronic energy + Delta-G solvation = -29402.422238 eV Core-core repulsion = 25588.027315 eV Total energy + Delta-G solvation = -3814.394923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.92072 -41.13401 -39.13686 -35.83089 -35.61153 -35.56144 -33.98192 -33.36378 -31.56690 -30.86122 -29.75606 -27.96694 -26.86833 -25.88350 -24.65596 -23.63908 -22.39656 -22.00153 -20.85018 -20.29583 -19.03834 -18.79576 -18.25004 -17.48798 -17.08952 -16.56024 -16.32629 -15.80552 -15.61320 -15.42771 -15.03916 -14.87442 -14.62276 -14.41868 -14.34299 -14.21784 -14.12116 -13.83909 -13.54525 -13.45614 -12.95665 -12.89621 -12.72657 -12.54460 -12.50957 -12.42727 -12.31714 -12.18262 -11.90869 -11.89550 -11.55820 -11.36521 -11.23751 -11.00418 -10.94173 -10.48900 -10.45251 -9.98748 -8.59118 -7.80463 -5.26034 0.27032 0.84498 1.36018 1.46715 1.51710 1.58175 1.78935 2.33789 2.53741 3.10923 3.21840 3.36075 3.61701 3.74600 3.86713 4.02950 4.09856 4.14259 4.21354 4.23621 4.29954 4.43628 4.49103 4.56319 4.58992 4.67982 4.68216 4.78303 4.80895 4.94873 4.96829 5.00553 5.04153 5.07751 5.08294 5.15836 5.25275 5.32196 5.39660 5.46841 5.57250 5.64556 5.76709 5.85999 6.46145 6.54512 7.13670 7.16146 7.22299 7.92108 8.44116 9.25769 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.005039 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.412777 B = 5555.053397 C = 5916.480116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C 0.032 3.968 4 O 0.092 5.908 5 N -0.376 5.376 6 C 0.051 3.949 7 C -0.078 4.078 8 C -0.271 4.271 9 C 0.606 3.394 10 O -0.568 6.568 11 N -0.680 5.680 12 C 0.142 3.858 13 H 0.085 0.915 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.177 3.823 17 N -0.595 5.595 18 C -0.242 4.242 19 H 0.077 0.923 20 C -0.046 4.046 21 N -0.933 5.933 22 Si 0.951 3.049 23 H -0.266 1.266 24 H -0.296 1.296 25 H -0.300 1.300 26 C 0.156 3.844 27 H 0.035 0.965 28 C -0.129 4.129 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.408 0.592 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.056 0.944 43 H -0.006 1.006 44 H 0.246 0.754 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.948 -2.406 -7.720 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.031 4.031 4 O 0.032 5.968 5 N -0.085 5.085 6 C -0.111 4.111 7 C -0.135 4.135 8 C -0.278 4.278 9 C 0.391 3.609 10 O -0.448 6.448 11 N -0.329 5.329 12 C 0.036 3.964 13 H 0.102 0.898 14 C -0.154 4.154 15 C -0.165 4.165 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.372 4.372 19 H 0.095 0.905 20 C -0.241 4.241 21 N -0.580 5.580 22 Si 0.781 3.219 23 H -0.191 1.191 24 H -0.223 1.223 25 H -0.228 1.228 26 C 0.050 3.950 27 H 0.052 0.948 28 C -0.187 4.187 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.244 0.756 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.012 0.988 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.694 -2.012 -8.332 15.316 hybrid contribution -1.540 0.400 0.378 1.635 sum 11.154 -1.612 -7.954 13.794 Atomic orbital electron populations 1.21812 0.92339 1.04162 1.02386 1.20417 0.97204 0.84193 1.06357 1.25159 0.96484 0.97021 0.84472 1.84485 1.61672 1.17422 1.33174 1.73576 1.18717 0.99233 1.16975 1.25181 0.99771 0.97196 0.88971 1.20344 1.03005 0.90494 0.99683 1.21995 1.14394 0.96262 0.95170 1.16877 0.82523 0.77473 0.84040 1.90766 1.39813 1.45790 1.68400 1.45936 1.13954 1.61408 1.11625 1.21455 0.99006 0.95235 0.80730 0.89751 1.21725 0.97205 0.95530 1.00934 1.21982 0.95505 0.99303 0.99737 1.20605 0.95317 0.82765 0.96126 1.44328 1.17083 1.02968 1.67495 1.19466 0.87352 1.00768 1.29643 0.90524 1.25657 0.98311 1.00032 1.00101 1.70164 1.09077 1.37952 1.40829 0.85447 0.79123 0.78691 0.78625 1.19055 1.22295 1.22810 1.20854 0.85388 0.94092 0.94692 0.94779 1.21715 1.00457 0.94973 1.01517 0.89068 0.93648 0.91607 0.86005 0.88505 0.88562 0.88695 0.89544 0.75560 0.91334 0.92186 0.91814 0.92400 0.92571 0.98828 0.94498 0.93429 0.91485 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.89 71.98 0.71 -2.11 16 2 C -0.04 -0.80 6.38 29.84 0.19 -0.61 16 3 C 0.03 0.80 6.80 25.48 0.17 0.98 16 4 O 0.09 2.41 11.06 77.00 0.85 3.26 16 5 N -0.38 -10.65 12.01 -44.77 -0.54 -11.18 16 6 C 0.05 1.38 7.59 45.16 0.34 1.72 16 7 C -0.08 -1.63 10.49 71.23 0.75 -0.88 16 8 C -0.27 -7.67 6.24 -18.74 -0.12 -7.78 16 9 C 0.61 18.68 7.57 86.65 0.66 19.34 16 10 O -0.57 -20.54 16.77 -4.06 -0.07 -20.61 16 11 N -0.68 -20.64 3.45 -445.44 -1.54 -22.18 16 12 C 0.14 4.48 2.33 45.07 0.10 4.58 16 13 H 0.08 2.64 7.58 -2.39 -0.02 2.62 16 14 C -0.12 -3.58 5.58 30.62 0.17 -3.41 16 15 C -0.13 -4.25 5.93 30.67 0.18 -4.07 16 16 C 0.18 7.72 5.29 86.36 0.46 8.18 16 17 N -0.59 -25.80 2.65 -675.23 -1.79 -27.59 16 18 C -0.24 -11.65 8.60 84.03 0.72 -10.92 16 19 H 0.08 3.55 6.21 -2.91 -0.02 3.53 16 20 C -0.05 -2.35 4.96 84.86 0.42 -1.93 16 21 N -0.93 -51.96 11.14 21.65 0.24 -51.72 16 22 Si 0.95 42.42 29.58 68.60 2.03 44.45 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 C 0.16 5.64 3.20 44.97 0.14 5.79 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 C -0.13 -4.21 7.73 71.98 0.56 -3.65 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.08 7.00 -2.39 -0.02 1.06 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 1.86 8.11 -2.38 -0.02 1.84 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.41 13.16 7.76 -92.71 -0.72 12.44 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.06 1.92 6.39 -2.39 -0.02 1.90 16 42 H 0.06 2.82 6.06 -2.39 -0.01 2.81 16 43 H -0.01 -0.31 8.14 -2.39 -0.02 -0.32 16 44 H 0.25 13.48 8.31 -92.70 -0.77 12.71 16 45 H 0.05 1.71 7.62 -2.39 -0.02 1.69 16 46 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 47 H 0.05 1.74 6.40 -2.39 -0.02 1.73 16 Total: -1.00 -61.37 375.68 4.92 -56.46 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.26 Total: 23.89 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.46 Total: 5.22 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -3.62 Total: -112.67 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.78 Total: -17.35 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -61.37 4.92 -56.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994392324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.323 kcal (2) G-P(sol) polarization free energy of solvation -61.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds