Wall clock time and date at job start Tue Mar 31 2020 13:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50704 * 109.47435 * 2 1 4 4 N 1.29931 * 125.38084 * 89.98983 * 3 2 1 5 5 C 1.36069 * 108.47611 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.44722 * 180.02562 * 5 4 3 7 7 O 1.21614 * 119.99529 * 179.97438 * 6 5 4 8 8 N 1.34774 * 119.99804 * 359.97388 * 6 5 4 9 9 C 1.47012 * 125.65164 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.27184 * 181.02397 * 9 8 6 11 11 H 1.09003 * 110.71969 * 140.55858 * 10 9 8 12 12 N 1.46494 * 110.72023 * 263.65077 * 10 9 8 13 13 C 1.36937 * 120.00404 * 273.54400 * 12 10 9 14 14 H 1.07997 * 119.99804 * 0.02562 * 13 12 10 15 15 C 1.38813 * 120.00063 * 179.97438 * 13 12 10 16 16 N 1.31620 * 120.00017 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00110 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47166 * 90.00011 * 17 15 13 19 19 H 1.48503 * 109.47275 * 210.00087 * 17 15 13 20 20 H 1.48505 * 109.47538 * 330.00069 * 17 15 13 21 21 C 1.55150 * 102.94079 * 22.19713 * 10 9 8 22 22 C 1.52997 * 111.00972 * 82.57162 * 21 10 9 23 23 C 1.53005 * 111.00403 * 206.38819 * 21 10 9 24 24 C 1.47429 * 125.64284 * 179.71988 * 8 6 5 25 25 C 1.36092 * 107.10216 * 0.02562 * 5 4 3 26 26 C 1.50703 * 126.52366 * 180.02562 * 25 5 4 27 27 O 1.34055 * 125.37605 * 270.26669 * 3 2 1 28 28 H 1.09000 * 109.47604 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47956 * 300.00691 * 1 2 3 30 30 H 1.09010 * 109.47055 * 60.00514 * 1 2 3 31 31 H 1.08998 * 109.47956 * 239.99309 * 2 1 3 32 32 H 1.09010 * 109.47055 * 119.99486 * 2 1 3 33 33 H 1.09006 * 109.88509 * 300.44106 * 9 8 6 34 34 H 1.08999 * 109.88582 * 61.60790 * 9 8 6 35 35 H 0.97000 * 120.00029 * 93.54819 * 12 10 9 36 36 H 0.96996 * 120.00501 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.47121 * 59.99615 * 22 21 10 38 38 H 1.08996 * 109.47562 * 179.97438 * 22 21 10 39 39 H 1.08998 * 109.46929 * 299.99684 * 22 21 10 40 40 H 1.09003 * 109.47391 * 59.99350 * 23 21 10 41 41 H 1.08994 * 109.47693 * 179.97438 * 23 21 10 42 42 H 1.09010 * 109.46921 * 299.99553 * 23 21 10 43 43 H 1.08994 * 110.36614 * 274.74264 * 24 8 6 44 44 H 1.08999 * 110.37026 * 37.06632 * 24 8 6 45 45 H 1.09002 * 109.47152 * 90.00161 * 26 25 5 46 46 H 1.09001 * 109.46980 * 330.00261 * 26 25 5 47 47 H 1.09004 * 109.47113 * 210.00242 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2830 2.1302 1.0594 5 6 2.7176 3.3574 0.6637 6 6 3.1125 4.4723 1.5437 7 8 3.4857 5.5246 1.0615 8 7 3.0599 4.3254 2.8823 9 6 2.6305 3.1134 3.5951 10 6 2.7097 3.4180 5.1059 11 1 1.8638 2.9769 5.6332 12 7 3.9750 2.9370 5.6660 13 6 4.0841 1.6424 6.0988 14 1 3.2375 0.9759 6.0268 15 6 5.2833 1.1866 6.6290 16 7 5.3883 -0.0579 7.0445 17 14 6.7479 2.3392 6.7528 18 1 6.7198 3.0363 8.0638 19 1 8.0048 1.5571 6.6349 20 1 6.6837 3.3408 5.6582 21 6 2.6380 4.9672 5.1522 22 6 1.1891 5.4519 5.0721 23 6 3.3265 5.5109 6.4058 24 6 3.4294 5.3514 3.8744 25 6 2.7192 3.3618 -0.6972 26 6 3.1250 4.5061 -1.5899 27 8 2.2863 2.1542 -1.0930 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6053 2.8652 3.3203 34 1 3.2936 2.2840 3.3490 35 1 4.7356 3.5356 5.7304 36 1 6.2261 -0.3764 7.4153 37 1 0.6247 5.0506 5.9138 38 1 1.1677 6.5410 5.1070 39 1 0.7424 5.1092 4.1388 40 1 4.3740 5.2093 6.4047 41 1 3.2621 6.5989 6.4129 42 1 2.8344 5.1116 7.2927 43 1 4.5018 5.3240 4.0670 44 1 3.1307 6.3403 3.5267 45 1 4.1915 4.4384 -1.8052 46 1 2.9149 5.4506 -1.0881 47 1 2.5623 4.4569 -2.5222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996405787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:56 Heat of formation + Delta-G solvation = -1.125414 kcal Electronic energy + Delta-G solvation = -28530.667795 eV Core-core repulsion = 24715.535973 eV Total energy + Delta-G solvation = -3815.131822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.43110 -39.95176 -37.97082 -35.09695 -34.16154 -33.99073 -33.12466 -31.69323 -31.04460 -28.21499 -27.73316 -26.86064 -26.17621 -24.40399 -23.50588 -22.64616 -21.36055 -21.06592 -19.28171 -18.94577 -17.55101 -17.17023 -16.98777 -15.97706 -15.68543 -15.21611 -14.83504 -14.67407 -14.41546 -14.35902 -13.81550 -13.63500 -13.46452 -13.34973 -12.85601 -12.75647 -12.72200 -12.52695 -12.45289 -12.15001 -12.07356 -11.91320 -11.70774 -11.62662 -11.39281 -11.25297 -11.15755 -10.97741 -10.73687 -10.55426 -10.39597 -10.25763 -9.93566 -9.83042 -9.57159 -8.97097 -8.81882 -8.20976 -7.31109 -5.79543 -3.15338 1.10899 2.09294 2.43833 3.19247 3.35569 3.38476 3.43910 3.46290 3.85872 4.53635 4.56817 4.59419 4.84079 4.87182 4.94567 5.02255 5.09840 5.12383 5.17959 5.34115 5.35147 5.43366 5.53137 5.58000 5.61928 5.70767 5.74564 5.79855 5.83854 5.87279 5.90001 5.97069 6.01660 6.10705 6.12565 6.14954 6.23670 6.28766 6.39250 6.58884 6.61294 6.73455 6.87205 7.54687 7.81432 7.96523 8.33312 8.39457 9.17006 9.89564 10.08609 11.38556 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.004614 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.199547 B = 6067.410878 C = 7099.017298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.026 4.026 3 C 0.190 3.810 4 N -0.441 5.441 5 C -0.064 4.064 6 C 0.611 3.389 7 O -0.552 6.552 8 N -0.589 5.589 9 C 0.088 3.912 10 C 0.181 3.819 11 H 0.078 0.922 12 N -0.738 5.738 13 C -0.243 4.243 14 H 0.093 0.907 15 C 0.009 3.991 16 N -0.931 5.931 17 Si 0.878 3.122 18 H -0.282 1.282 19 H -0.291 1.291 20 H -0.278 1.278 21 C -0.092 4.092 22 C -0.128 4.128 23 C -0.126 4.126 24 C 0.120 3.880 25 C 0.029 3.971 26 C -0.072 4.072 27 O -0.200 6.200 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.362 0.638 36 H 0.259 0.741 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 6.891 -14.559 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 C -0.019 4.019 4 N -0.170 5.170 5 C -0.184 4.184 6 C 0.400 3.600 7 O -0.433 6.433 8 N -0.319 5.319 9 C -0.037 4.037 10 C 0.070 3.930 11 H 0.096 0.904 12 N -0.380 5.380 13 C -0.372 4.372 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.579 5.579 17 Si 0.708 3.292 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.094 4.094 22 C -0.186 4.186 23 C -0.184 4.184 24 C -0.003 4.003 25 C -0.027 4.027 26 C -0.128 4.128 27 O -0.087 6.087 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.197 0.803 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.129 0.871 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.976 6.960 -14.168 18.673 hybrid contribution 1.381 0.691 -0.597 1.656 sum -8.595 7.650 -14.765 18.719 Atomic orbital electron populations 1.21779 0.93079 1.03011 1.02857 1.20116 0.96827 0.83933 1.05553 1.26332 1.00417 0.96935 0.78224 1.70987 1.14523 1.02241 1.29219 1.21423 1.10463 0.94551 0.91955 1.16320 0.78054 0.85060 0.80613 1.90732 1.50021 1.27767 1.74745 1.48180 1.63178 1.16643 1.03935 1.23207 0.99873 0.86658 0.93962 1.21275 0.90800 0.90309 0.90653 0.90415 1.42804 1.09173 1.11561 1.74460 1.19049 0.98689 0.86442 1.33061 0.88958 1.24619 0.97311 0.95877 1.00859 1.69687 1.26099 1.14640 1.47463 0.86662 0.83870 0.80777 0.77896 1.20897 1.21734 1.20446 1.22092 0.95646 0.97325 0.94318 1.21654 0.94541 1.00460 1.01913 1.21595 1.00919 0.99311 0.96602 1.22361 0.99033 0.91559 0.87315 1.23632 0.98760 0.85850 0.94491 1.20537 1.02314 0.92528 0.97454 1.84291 1.63927 1.22300 1.38199 0.90814 0.91557 0.92427 0.88959 0.87007 0.91790 0.89686 0.80331 0.93052 0.92050 0.92737 0.92717 0.92311 0.93173 0.91544 0.91484 0.90782 0.89259 0.87087 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.15 0.37 -0.83 16 2 C -0.03 -0.25 6.56 -27.89 -0.18 -0.43 16 3 C 0.19 2.58 7.56 -13.08 -0.10 2.48 16 4 N -0.44 -7.27 8.84 -7.65 -0.07 -7.34 16 5 C -0.06 -1.08 6.83 -83.02 -0.57 -1.64 16 6 C 0.61 11.15 7.85 -12.52 -0.10 11.05 16 7 O -0.55 -10.47 15.06 5.27 0.08 -10.39 16 8 N -0.59 -10.56 3.31 -171.64 -0.57 -11.13 16 9 C 0.09 1.63 4.95 -3.07 -0.02 1.62 16 10 C 0.18 3.37 2.85 -66.10 -0.19 3.18 16 11 H 0.08 1.45 8.02 -51.93 -0.42 1.04 16 12 N -0.74 -16.76 4.42 -51.66 -0.23 -16.99 16 13 C -0.24 -6.59 10.46 -15.06 -0.16 -6.75 16 14 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 15 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 16 N -0.93 -28.73 13.97 55.49 0.78 -27.95 16 17 Si 0.88 21.98 27.74 -169.99 -4.71 17.27 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.28 -6.69 6.52 56.52 0.37 -6.33 16 21 C -0.09 -1.42 0.84 -152.24 -0.13 -1.54 16 22 C -0.13 -1.65 8.58 37.16 0.32 -1.33 16 23 C -0.13 -1.87 8.22 37.16 0.31 -1.57 16 24 C 0.12 1.97 5.83 -2.40 -0.01 1.96 16 25 C 0.03 0.41 7.44 -35.08 -0.26 0.15 16 26 C -0.07 -0.78 9.88 36.01 0.36 -0.42 16 27 O -0.20 -2.70 10.73 6.52 0.07 -2.63 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.06 1.13 7.64 -51.93 -0.40 0.73 16 34 H 0.08 1.85 7.65 -51.93 -0.40 1.45 16 35 H 0.36 8.26 3.98 -40.82 -0.16 8.10 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.73 7.91 -51.93 -0.41 0.32 16 40 H 0.06 0.97 6.39 -51.93 -0.33 0.64 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 43 H 0.07 1.18 7.99 -51.93 -0.41 0.76 16 44 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.11 1.31 6.48 -51.93 -0.34 0.98 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 377.96 15.07 5.70 5.70 Total: -1.00 -32.91 377.96 -6.94 -39.85 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.52 Total: 7.50 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.46 Total: 6.11 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -0.09 Total: -63.41 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.15 Total: -13.02 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.91 -6.94 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996405787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.726 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds