Wall clock time and date at job start Tue Mar 31 2020 13:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46786 * 2 1 4 4 N 1.30017 * 127.33211 * 89.98201 * 3 2 1 5 5 O 1.20650 * 112.30043 * 180.02562 * 4 3 2 6 6 C 1.33498 * 113.15892 * 0.02562 * 5 4 3 7 7 C 1.37351 * 106.33859 * 0.25757 * 6 5 4 8 8 C 1.47401 * 128.56662 * 179.69814 * 7 6 5 9 9 O 1.21601 * 120.00564 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99569 * 0.02804 * 8 7 6 11 11 C 1.46503 * 119.99928 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46490 * 35.00424 * 11 10 8 13 13 C 1.52997 * 109.47512 * 275.00407 * 11 10 8 14 14 C 1.52998 * 109.46874 * 154.99849 * 11 10 8 15 15 C 1.53039 * 109.46502 * 300.03167 * 14 11 10 16 16 C 1.53195 * 109.31508 * 178.59815 * 15 14 11 17 17 N 1.46926 * 108.76227 * 54.65460 * 16 15 14 18 18 C 1.36944 * 120.62780 * 126.40247 * 17 16 15 19 19 H 1.07995 * 120.00028 * 331.82855 * 18 17 16 20 20 C 1.38807 * 119.99696 * 151.82781 * 18 17 16 21 21 N 1.31620 * 120.00504 * 343.07281 * 20 18 17 22 22 Si 1.86804 * 120.00094 * 163.07164 * 20 18 17 23 23 H 1.48504 * 109.46914 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47369 * 119.99933 * 22 20 18 25 25 H 1.48497 * 109.47248 * 240.00498 * 22 20 18 26 26 C 1.46929 * 118.74025 * 306.38741 * 17 16 15 27 27 C 1.53041 * 109.45957 * 179.97438 * 14 11 10 28 28 H 1.08994 * 109.47618 * 59.99709 * 1 2 3 29 29 H 1.09002 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46943 * 299.99368 * 1 2 3 31 31 H 1.09000 * 109.46442 * 240.00675 * 2 1 3 32 32 H 1.08994 * 109.47618 * 120.00291 * 2 1 3 33 33 H 1.07995 * 126.82566 * 179.97438 * 6 5 4 34 34 H 0.97005 * 119.99980 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.46865 * 299.99820 * 13 11 10 36 36 H 1.09002 * 109.47057 * 59.99891 * 13 11 10 37 37 H 1.08997 * 109.46987 * 180.02562 * 13 11 10 38 38 H 1.09001 * 109.45894 * 60.00476 * 14 11 10 39 39 H 1.08993 * 109.49850 * 298.56823 * 15 14 11 40 40 H 1.09003 * 109.49759 * 58.66017 * 15 14 11 41 41 H 1.08998 * 109.60036 * 294.86804 * 16 15 14 42 42 H 1.09001 * 109.70200 * 174.50381 * 16 15 14 43 43 H 0.96990 * 120.00769 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58065 * 293.81597 * 26 17 16 45 45 H 1.08999 * 109.70256 * 173.46672 * 26 17 16 46 46 H 1.08995 * 109.49757 * 301.33812 * 27 14 11 47 47 H 1.08994 * 109.49488 * 61.44001 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2947 2.1644 1.0338 5 8 2.6827 3.2631 0.7209 6 6 2.7451 3.4412 -0.6007 7 6 2.3229 2.2645 -1.1695 8 6 2.1947 1.9289 -2.5991 9 8 1.8004 0.8279 -2.9323 10 7 2.5145 2.8426 -3.5370 11 6 2.3877 2.5089 -4.9579 12 1 1.5281 1.8544 -5.1019 13 6 3.6565 1.7959 -5.4297 14 6 2.1928 3.7924 -5.7676 15 6 0.9239 4.5058 -5.2950 16 6 0.7510 5.8077 -6.0837 17 7 0.7688 5.4964 -7.5195 18 6 -0.2501 5.9098 -8.3356 19 1 -1.2429 6.0464 -7.9331 20 6 -0.0069 6.1533 -9.6804 21 7 1.2276 6.3153 -10.1071 22 14 -1.4316 6.2511 -10.8846 23 1 -2.7090 6.0351 -10.1586 24 1 -1.4466 7.5903 -11.5261 25 1 -1.2720 5.2049 -11.9263 26 6 1.9007 4.7333 -8.0630 27 6 2.0609 3.4437 -7.2519 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8932 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.0600 4.3346 -1.1193 34 1 2.8294 3.7207 -3.2712 35 1 4.5160 2.4505 -5.2855 36 1 3.7952 0.8816 -4.8528 37 1 3.5622 1.5482 -6.4869 38 1 3.0524 4.4468 -5.6233 39 1 0.0608 3.8616 -5.4620 40 1 1.0087 4.7329 -4.2323 41 1 1.5680 6.4895 -5.8475 42 1 -0.1998 6.2722 -5.8222 43 1 1.3976 6.4858 -11.0467 44 1 2.8114 5.3276 -7.9882 45 1 1.7100 4.4868 -9.1074 46 1 2.9550 2.9150 -7.5822 47 1 1.1869 2.8097 -7.4003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997293255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:40 Heat of formation + Delta-G solvation = 7.835593 kcal Electronic energy + Delta-G solvation = -27611.293344 eV Core-core repulsion = 23796.550100 eV Total energy + Delta-G solvation = -3814.743244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.95431 -40.98840 -39.35920 -36.87557 -36.14238 -34.63713 -33.59818 -32.44575 -32.24445 -31.36777 -30.40072 -27.16934 -26.27824 -25.20049 -24.36398 -23.61790 -22.13529 -21.98294 -21.37190 -20.70876 -19.25060 -18.73647 -18.61893 -17.57843 -17.18221 -16.79304 -16.16149 -15.76722 -15.75035 -15.30869 -15.28497 -14.98330 -14.84654 -14.72119 -14.38068 -14.15696 -13.99620 -13.65069 -13.52530 -13.37158 -12.92083 -12.72573 -12.69934 -12.63100 -12.53876 -12.38780 -12.12626 -11.98569 -11.93452 -11.76752 -11.46187 -11.31233 -11.06353 -11.01514 -10.96548 -10.78563 -10.52382 -10.06611 -8.63974 -7.86231 -5.30530 0.10082 0.73626 1.45036 1.47938 1.57460 1.88349 2.17497 2.30669 2.51778 2.98669 3.28035 3.29682 3.70171 3.75596 3.82191 3.97163 3.99768 4.11151 4.21890 4.30057 4.34889 4.44384 4.50890 4.59562 4.60463 4.63588 4.77322 4.83544 4.84404 4.93054 4.94169 5.02665 5.07373 5.11533 5.15690 5.21570 5.24022 5.32140 5.40173 5.48123 5.52068 5.58866 5.68578 5.83810 6.41832 6.52052 7.17155 7.18057 7.21993 7.90919 8.40334 9.19587 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.002623 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.767556 B =10673.613623 C =10749.169491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 C 0.057 3.943 4 N -0.379 5.379 5 O 0.097 5.903 6 C 0.031 3.969 7 C -0.280 4.280 8 C 0.597 3.403 9 O -0.567 6.567 10 N -0.700 5.700 11 C 0.159 3.841 12 H 0.065 0.935 13 C -0.158 4.158 14 C -0.072 4.072 15 C -0.113 4.113 16 C 0.141 3.859 17 N -0.613 5.613 18 C -0.261 4.261 19 H 0.061 0.939 20 C -0.049 4.049 21 N -0.932 5.932 22 Si 0.961 3.039 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.177 3.823 27 C -0.122 4.122 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.276 0.724 34 H 0.414 0.586 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.023 0.977 42 H 0.046 0.954 43 H 0.249 0.751 44 H 0.002 0.998 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 -7.761 19.900 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.106 4.106 4 N -0.087 5.087 5 O 0.039 5.961 6 C -0.051 4.051 7 C -0.287 4.287 8 C 0.384 3.616 9 O -0.447 6.447 10 N -0.351 5.351 11 C 0.055 3.945 12 H 0.083 0.917 13 C -0.216 4.216 14 C -0.091 4.091 15 C -0.152 4.152 16 C 0.015 3.985 17 N -0.337 5.337 18 C -0.391 4.391 19 H 0.079 0.921 20 C -0.245 4.245 21 N -0.579 5.579 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.052 3.948 27 C -0.162 4.162 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.292 0.708 34 H 0.251 0.749 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.067 0.933 46 H 0.095 0.905 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.891 -8.642 20.838 23.315 hybrid contribution -0.624 0.570 -1.918 2.095 sum 5.267 -8.072 18.920 21.234 Atomic orbital electron populations 1.21615 0.93260 1.03231 1.01362 1.20048 0.97046 0.87211 1.04266 1.25150 0.99115 0.99450 0.86839 1.73682 1.17715 0.93249 1.24015 1.84555 1.61540 1.25951 1.24073 1.27286 0.94676 1.00185 0.82980 1.22289 1.14936 0.96735 0.94748 1.16989 0.76733 0.84211 0.83674 1.90775 1.47984 1.23488 1.82493 1.45745 1.66861 1.16911 1.05606 1.20872 0.98674 0.96137 0.78836 0.91662 1.22159 0.97308 1.00305 1.01852 1.21194 0.98644 0.95147 0.94127 1.21900 0.96995 0.96916 0.99426 1.21066 0.98655 0.94964 0.83765 1.44345 1.23416 1.61889 1.04018 1.19503 0.89385 1.38928 0.91295 0.92100 1.25718 0.98254 1.00433 1.00069 1.70162 1.19799 1.53351 1.14562 0.85305 0.79797 0.76793 0.79153 1.19404 1.21848 1.21745 1.20576 0.88093 0.89510 0.96636 1.22068 1.00895 0.98187 0.95016 0.93802 0.90039 0.92565 0.89342 0.88951 0.70833 0.74862 0.90893 0.93263 0.91030 0.89737 0.94101 0.89720 0.95942 0.93514 0.94146 0.98029 0.93328 0.90531 0.93839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.05 -0.93 6.19 29.85 0.18 -0.75 16 3 C 0.06 1.21 6.84 45.16 0.31 1.52 16 4 N -0.38 -7.98 12.01 -44.78 -0.54 -8.52 16 5 O 0.10 1.55 11.06 76.95 0.85 2.40 16 6 C 0.03 0.33 11.85 67.61 0.80 1.13 16 7 C -0.28 -5.22 6.47 -18.75 -0.12 -5.34 16 8 C 0.60 13.49 7.78 86.66 0.67 14.16 16 9 O -0.57 -17.28 15.37 -4.03 -0.06 -17.35 16 10 N -0.70 -12.68 4.36 -445.83 -1.94 -14.63 16 11 C 0.16 3.69 2.16 44.99 0.10 3.78 16 12 H 0.07 1.88 7.58 -2.39 -0.02 1.86 16 13 C -0.16 -3.35 9.13 71.98 0.66 -2.70 16 14 C -0.07 -1.91 1.79 -10.77 -0.02 -1.93 16 15 C -0.11 -3.30 5.22 30.67 0.16 -3.14 16 16 C 0.14 5.36 6.52 86.36 0.56 5.92 16 17 N -0.61 -29.68 2.99 -699.10 -2.09 -31.77 16 18 C -0.26 -14.21 9.58 84.03 0.81 -13.41 16 19 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 20 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 21 N -0.93 -54.33 11.19 21.65 0.24 -54.09 16 22 Si 0.96 44.74 29.59 68.60 2.03 46.77 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 C 0.18 8.11 5.30 86.36 0.46 8.57 16 27 C -0.12 -4.16 5.04 30.67 0.15 -4.00 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.94 7.13 -2.39 -0.02 1.92 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.28 -0.22 7.68 -2.91 -0.02 -0.24 16 34 H 0.41 4.55 7.57 -92.70 -0.70 3.84 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.55 6.40 -2.39 -0.02 1.53 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.84 7.41 -2.39 -0.02 1.82 16 41 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.05 1.80 7.93 -2.39 -0.02 1.78 16 43 H 0.25 14.07 8.31 -92.72 -0.77 13.30 16 44 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.05 2.59 6.07 -2.39 -0.01 2.57 16 46 H 0.08 2.26 6.36 -2.39 -0.02 2.24 16 47 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -72.31 376.45 4.61 -67.69 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.27 Total: 9.78 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 5.85 Total: -0.29 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -4.33 Total: -109.01 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.79 Total: -14.94 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -72.31 4.61 -67.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997293255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.530 kcal (2) G-P(sol) polarization free energy of solvation -72.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds