Wall clock time and date at job start Tue Mar 31 2020 13:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47210 * 2 1 4 4 C 1.35309 * 126.66204 * 90.00161 * 3 2 1 5 5 C 1.42269 * 103.92064 * 180.02562 * 4 3 2 6 6 C 1.48333 * 126.94236 * 180.02562 * 5 4 3 7 7 O 1.21505 * 119.99657 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00387 * 179.97438 * 6 5 4 9 9 C 1.46507 * 120.00036 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47092 * 325.00553 * 9 8 6 11 11 C 1.53005 * 109.46771 * 85.00441 * 9 8 6 12 12 C 1.53001 * 109.47061 * 205.00174 * 9 8 6 13 13 C 1.53046 * 109.46094 * 300.03052 * 12 9 8 14 14 C 1.53185 * 109.31081 * 178.60236 * 13 12 9 15 15 N 1.46928 * 108.76623 * 54.65297 * 14 13 12 16 16 C 1.36946 * 120.62863 * 126.40533 * 15 14 13 17 17 H 1.08002 * 119.99937 * 331.82833 * 16 15 14 18 18 C 1.38813 * 119.99873 * 151.82770 * 16 15 14 19 19 N 1.31617 * 120.00214 * 343.07072 * 18 16 15 20 20 Si 1.86796 * 119.99574 * 163.06730 * 18 16 15 21 21 H 1.48494 * 109.47550 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47142 * 120.00249 * 20 18 16 23 23 H 1.48498 * 109.47254 * 239.99954 * 20 18 16 24 24 C 1.46923 * 118.74290 * 306.38301 * 15 14 13 25 25 C 1.53036 * 109.45873 * 179.97438 * 12 9 8 26 26 N 1.30986 * 106.12388 * 0.25807 * 5 4 3 27 27 O 1.20906 * 111.43527 * 359.53898 * 26 5 4 28 28 H 1.08999 * 109.46714 * 299.99729 * 1 2 3 29 29 H 1.09000 * 109.46830 * 59.99748 * 1 2 3 30 30 H 1.08999 * 109.46751 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47167 * 240.00205 * 2 1 3 32 32 H 1.08996 * 109.47522 * 120.00072 * 2 1 3 33 33 H 1.08007 * 128.04286 * 359.97438 * 4 3 2 34 34 H 0.96999 * 120.00296 * 0.02562 * 8 6 5 35 35 H 1.08997 * 109.47007 * 300.00105 * 11 9 8 36 36 H 1.08996 * 109.46802 * 179.97438 * 11 9 8 37 37 H 1.09000 * 109.46902 * 59.99964 * 11 9 8 38 38 H 1.08998 * 109.45831 * 60.00429 * 12 9 8 39 39 H 1.08995 * 109.49459 * 298.56752 * 13 12 9 40 40 H 1.09005 * 109.49673 * 58.66074 * 13 12 9 41 41 H 1.08999 * 109.60178 * 294.86511 * 14 13 12 42 42 H 1.08997 * 109.70447 * 174.50672 * 14 13 12 43 43 H 0.96993 * 120.00226 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.58481 * 293.82414 * 24 15 14 45 45 H 1.08997 * 109.70463 * 173.46402 * 24 15 14 46 46 H 1.08998 * 109.49881 * 301.33635 * 25 12 9 47 47 H 1.08997 * 109.49846 * 61.43568 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3017 2.1826 1.0854 5 6 2.7385 3.4198 0.5354 6 6 3.1656 4.6270 1.2842 7 8 3.1637 4.6204 2.4992 8 7 3.5558 5.7310 0.6169 9 6 3.9771 6.9234 1.3565 10 1 3.3843 7.0148 2.2665 11 6 5.4576 6.7998 1.7224 12 6 3.7689 8.1639 0.4853 13 6 4.6009 8.0349 -0.7927 14 6 4.3629 9.2621 -1.6781 15 7 4.6451 10.4724 -0.8941 16 6 5.5237 11.4149 -1.3578 17 1 6.3309 11.1243 -2.0139 18 6 5.3768 12.7439 -0.9847 19 7 4.2375 13.1624 -0.4755 20 14 6.7961 13.9381 -1.2051 21 1 7.9572 13.2239 -1.7940 22 1 6.3807 15.0386 -2.1117 23 1 7.1784 14.5016 0.1145 24 6 3.9664 10.6524 0.3964 25 6 4.2085 9.4093 1.2584 26 7 2.6825 3.2795 -0.7657 27 8 2.2986 2.1755 -1.0749 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2064 1.9141 2.1272 34 1 3.5570 5.7363 -0.3531 35 1 5.6059 5.9161 2.3429 36 1 5.7712 7.6872 2.2723 37 1 6.0504 6.7084 0.8123 38 1 2.7142 8.2517 0.2248 39 1 5.6578 7.9721 -0.5340 40 1 4.3036 7.1349 -1.3311 41 1 3.3254 9.2767 -2.0118 42 1 5.0245 9.2248 -2.5435 43 1 4.1350 14.0908 -0.2145 44 1 2.8965 10.7802 0.2319 45 1 4.3659 11.5313 0.9023 46 1 3.6318 9.4878 2.1800 47 1 5.2691 9.3335 1.4976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997838757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:02 Heat of formation + Delta-G solvation = 31.405707 kcal Electronic energy + Delta-G solvation = -27202.226573 eV Core-core repulsion = 23388.505406 eV Total energy + Delta-G solvation = -3813.721167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.36649 -40.00027 -38.07856 -35.47058 -35.25271 -34.17485 -32.83614 -31.21440 -30.50309 -29.79151 -28.88921 -25.74026 -25.08469 -24.49449 -23.26995 -22.69392 -22.18847 -20.59934 -20.02605 -18.71222 -18.12580 -17.78202 -17.07764 -16.62020 -15.98036 -15.08943 -15.07770 -14.89890 -14.74609 -14.27048 -14.07774 -13.83453 -13.78123 -13.56893 -13.12546 -13.09622 -12.74696 -12.49934 -12.34762 -12.14320 -11.95567 -11.68771 -11.47913 -11.41852 -11.26457 -10.92451 -10.72651 -10.70885 -10.45916 -10.37695 -10.17278 -10.09096 -9.89988 -9.79623 -9.52469 -9.41828 -9.08553 -8.46416 -6.65751 -5.78109 -3.20534 0.86562 1.37899 2.58650 2.88115 3.03198 3.37265 3.45311 3.47424 3.73635 4.13084 4.49102 4.50256 4.64321 4.69213 4.80190 4.95333 5.05080 5.12544 5.19824 5.29600 5.32400 5.39590 5.44560 5.51872 5.55707 5.64632 5.67389 5.71214 5.82613 5.99925 6.09217 6.14194 6.26157 6.36613 6.40754 6.50089 6.63156 6.72489 6.76952 6.81996 6.99553 7.32456 7.39267 7.67170 7.74415 7.80692 8.00509 8.46160 9.22485 9.85965 10.42929 11.30392 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.030989 B = 0.002328 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.322539 B =12026.767021 C =12389.764596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.033 4.033 4 C -0.182 4.182 5 C -0.023 4.023 6 C 0.596 3.404 7 O -0.527 6.527 8 N -0.703 5.703 9 C 0.144 3.856 10 H 0.087 0.913 11 C -0.163 4.163 12 C -0.085 4.085 13 C -0.130 4.130 14 C 0.146 3.854 15 N -0.592 5.592 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.171 3.829 25 C -0.133 4.133 26 N -0.331 5.331 27 O 0.123 5.877 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.180 0.820 34 H 0.406 0.594 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.016 0.984 42 H 0.053 0.947 43 H 0.253 0.747 44 H 0.017 0.983 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 -26.092 2.486 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.080 4.080 3 C -0.096 4.096 4 C -0.204 4.204 5 C -0.182 4.182 6 C 0.379 3.621 7 O -0.402 6.402 8 N -0.355 5.355 9 C 0.041 3.959 10 H 0.105 0.895 11 C -0.221 4.221 12 C -0.104 4.104 13 C -0.169 4.169 14 C 0.019 3.981 15 N -0.314 5.314 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.046 3.954 25 C -0.173 4.173 26 N -0.031 5.031 27 O 0.047 5.953 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.197 0.803 34 H 0.243 0.757 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.279 -25.010 2.410 25.675 hybrid contribution 0.526 0.376 0.180 0.671 sum -4.753 -24.634 2.590 25.221 Atomic orbital electron populations 1.21819 0.93276 1.02904 1.03073 1.20159 0.96789 0.86019 1.05029 1.24541 1.02345 0.97266 0.85489 1.22427 1.04840 0.91647 1.01504 1.23603 1.06353 0.98131 0.90150 1.16903 0.77519 0.81252 0.86414 1.90792 1.54388 1.82529 1.12452 1.46154 1.65389 1.12880 1.11094 1.21258 0.95908 0.83230 0.95508 0.89492 1.22236 0.95593 1.02310 1.01953 1.21335 1.00247 0.93239 0.95608 1.22128 1.00090 0.98525 0.96165 1.20874 0.97518 0.86589 0.93094 1.44052 1.50571 1.19538 1.17281 1.19223 1.04213 0.86871 1.27689 0.91711 1.25050 0.96441 0.96788 1.01484 1.70038 1.22386 1.15339 1.46986 0.86240 0.82161 0.81092 0.77386 1.20282 1.21775 1.21568 1.20762 0.95036 0.94239 0.85399 1.22264 1.00793 0.96103 0.98143 1.74204 1.14023 0.99248 1.15629 1.84782 1.60015 1.17034 1.33465 0.91940 0.91896 0.91079 0.89039 0.88247 0.80273 0.75733 0.92911 0.90693 0.91983 0.91333 0.91610 0.93776 0.96630 0.92839 0.93704 0.96527 0.89384 0.93095 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.89 37.16 0.37 -0.20 16 2 C -0.04 -0.16 6.50 -27.88 -0.18 -0.35 16 3 C -0.03 -0.26 6.73 -35.35 -0.24 -0.50 16 4 C -0.18 -1.78 10.92 -39.08 -0.43 -2.21 16 5 C -0.02 -0.29 7.19 -82.53 -0.59 -0.89 16 6 C 0.60 8.72 7.81 -12.11 -0.09 8.62 16 7 O -0.53 -8.94 16.62 5.36 0.09 -8.85 16 8 N -0.70 -9.79 5.00 -54.59 -0.27 -10.06 16 9 C 0.14 2.12 2.40 -67.92 -0.16 1.96 16 10 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 11 C -0.16 -2.30 8.78 37.16 0.33 -1.98 16 12 C -0.09 -1.39 2.14 -90.58 -0.19 -1.59 16 13 C -0.13 -2.17 4.81 -26.61 -0.13 -2.30 16 14 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 15 N -0.59 -14.70 2.99 -172.32 -0.52 -15.21 16 16 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 17 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 19 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 20 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 25 C -0.13 -2.47 4.96 -26.61 -0.13 -2.61 16 26 N -0.33 -4.06 11.84 33.29 0.39 -3.67 16 27 O 0.12 1.25 11.18 17.26 0.19 1.44 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.41 5.33 6.61 -40.82 -0.27 5.06 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.05 6.46 -51.93 -0.34 0.72 16 37 H 0.06 0.87 6.46 -51.93 -0.34 0.53 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.13 6.51 -51.93 -0.34 0.80 16 40 H 0.04 0.64 6.46 -51.93 -0.34 0.30 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 2.33 6.07 -51.93 -0.31 2.02 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 1.16 6.51 -51.93 -0.34 0.82 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -31.71 374.44 -7.88 -39.59 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.27 Total: 2.11 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.73 Total: -2.06 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.23 Total: -54.58 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.28 Total: -7.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.71 -7.88 -39.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997838757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.999 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds