Wall clock time and date at job start Tue Mar 31 2020 13:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47260 * 179.97438 * 3 2 1 5 5 O 1.33492 * 126.83056 * 270.02656 * 4 3 2 6 6 N 1.20655 * 113.15992 * 179.97438 * 5 4 3 7 7 C 1.30021 * 112.29885 * 359.71157 * 6 5 4 8 8 C 1.50696 * 127.33679 * 180.29852 * 7 6 5 9 9 C 1.37358 * 126.82962 * 89.99345 * 4 3 2 10 10 C 1.47399 * 128.56353 * 0.02562 * 9 4 3 11 11 O 1.21604 * 120.00535 * 89.99352 * 10 9 4 12 12 N 1.34784 * 119.99541 * 269.99501 * 10 9 4 13 13 C 1.46919 * 120.63188 * 359.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 233.51696 * 13 12 10 15 15 C 1.53070 * 109.29524 * 305.57804 * 14 13 12 16 16 C 1.53039 * 109.65812 * 61.15209 * 15 14 13 17 17 H 1.09001 * 109.49731 * 58.65147 * 16 15 14 18 18 N 1.46502 * 109.52382 * 178.73155 * 16 15 14 19 19 C 1.36939 * 119.99882 * 204.85287 * 18 16 15 20 20 H 1.07998 * 120.00469 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99908 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00358 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00081 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47436 * 90.00215 * 23 21 19 25 25 H 1.48497 * 109.47451 * 210.00249 * 23 21 19 26 26 H 1.48500 * 109.46997 * 330.00467 * 23 21 19 27 27 C 1.46928 * 120.62829 * 179.97438 * 12 10 9 28 28 H 1.09004 * 109.46604 * 60.00584 * 1 2 3 29 29 H 1.09003 * 109.46526 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47583 * 300.00282 * 1 2 3 31 31 H 1.08991 * 109.47583 * 239.99718 * 2 1 3 32 32 H 1.09002 * 109.47099 * 119.99309 * 2 1 3 33 33 H 1.08998 * 109.47278 * 59.99910 * 3 2 1 34 34 H 1.08994 * 109.47003 * 299.99669 * 3 2 1 35 35 H 1.08994 * 109.47572 * 270.15062 * 8 7 6 36 36 H 1.09002 * 109.47022 * 30.15023 * 8 7 6 37 37 H 1.08999 * 109.47400 * 150.14573 * 8 7 6 38 38 H 1.09002 * 109.58751 * 353.37646 * 13 12 10 39 39 H 1.08996 * 109.58750 * 113.65831 * 13 12 10 40 40 H 1.08997 * 109.50046 * 65.38734 * 14 13 12 41 41 H 1.09003 * 109.49733 * 185.48713 * 14 13 12 42 42 H 1.09007 * 109.35101 * 301.12962 * 15 14 13 43 43 H 1.09002 * 109.45432 * 181.24117 * 15 14 13 44 44 H 0.96991 * 120.00225 * 24.85886 * 18 16 15 45 45 H 0.96990 * 120.00431 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58787 * 246.20220 * 27 12 10 47 47 H 1.08999 * 109.58470 * 6.62573 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.3468 1.4423 1.0695 6 7 5.5192 1.4420 0.7848 7 6 5.7148 1.4360 -0.5006 8 6 7.0369 1.4274 -1.2239 9 6 4.3708 1.4424 -1.0985 10 6 3.9997 1.4425 -2.5250 11 8 3.8468 2.4956 -3.1135 12 7 3.8298 0.2752 -3.1771 13 6 4.0115 -1.0051 -2.4799 14 6 5.0113 -1.8600 -3.2651 15 6 4.5355 -1.9919 -4.7140 16 6 4.4664 -0.6069 -5.3613 17 1 5.4501 -0.1386 -5.3244 18 7 4.0400 -0.7393 -6.7566 19 6 4.3763 0.2242 -7.6697 20 1 4.9562 1.0815 -7.3614 21 6 3.9727 0.0985 -8.9919 22 7 3.2663 -0.9465 -9.3679 23 14 4.4320 1.4125 -10.2376 24 1 5.7345 1.0686 -10.8625 25 1 3.3841 1.4876 -11.2871 26 1 4.5427 2.7259 -9.5537 27 6 3.4594 0.2591 -4.5988 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 7.3613 2.4529 -1.4001 36 1 7.7799 0.9105 -0.6166 37 1 6.9257 0.9124 -2.1781 38 1 4.3955 -0.8233 -1.4761 39 1 3.0560 -1.5257 -2.4168 40 1 5.9908 -1.3823 -3.2480 41 1 5.0801 -2.8486 -2.8110 42 1 3.5462 -2.4495 -4.7291 43 1 5.2335 -2.6181 -5.2697 44 1 3.5194 -1.5093 -7.0337 45 1 2.9839 -1.0341 -10.2917 46 1 2.4592 -0.1593 -4.7111 47 1 3.4790 1.2751 -4.9931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999146366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:07 Heat of formation + Delta-G solvation = 19.952857 kcal Electronic energy + Delta-G solvation = -28374.248457 eV Core-core repulsion = 24560.030657 eV Total energy + Delta-G solvation = -3814.217800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.01107 -39.92615 -37.35568 -35.94048 -34.79211 -34.37165 -32.40992 -31.89025 -31.22042 -28.97270 -28.44067 -27.39637 -25.74385 -24.13999 -23.53191 -22.23804 -21.91239 -20.74275 -19.94675 -19.13651 -17.88649 -17.50579 -17.12653 -16.58393 -15.87562 -15.63002 -15.05690 -14.67269 -14.39612 -14.19870 -14.05455 -13.77130 -13.50481 -13.46372 -13.45635 -13.27873 -12.97081 -12.73976 -12.63898 -12.46387 -12.32577 -11.88185 -11.68170 -11.45143 -11.33160 -11.11965 -10.95960 -10.85467 -10.71612 -10.63445 -10.24090 -10.15901 -9.93282 -9.88306 -9.70198 -9.42807 -9.11972 -8.44191 -7.04233 -5.81922 -3.12042 1.16225 1.78437 2.46424 2.69672 3.18049 3.42961 3.48796 3.50959 3.94037 4.06503 4.48746 4.55501 4.59134 4.63097 4.80480 4.85663 4.90888 5.03726 5.18994 5.20327 5.28754 5.32529 5.34557 5.41910 5.44686 5.45733 5.48575 5.53197 5.58824 5.73911 5.76298 5.83489 5.84405 5.88964 5.95172 5.98955 6.10524 6.15786 6.28479 6.42222 6.64754 6.76491 6.93641 7.51152 7.68771 8.07968 8.22239 8.36197 9.48178 10.01322 10.36574 11.40224 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.003517 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.863431 B = 7960.161862 C = 8405.411369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.044 4.044 4 C 0.013 3.987 5 O 0.095 5.905 6 N -0.358 5.358 7 C 0.054 3.946 8 C -0.078 4.078 9 C -0.235 4.235 10 C 0.592 3.408 11 O -0.526 6.526 12 N -0.592 5.592 13 C 0.109 3.891 14 C -0.129 4.129 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.051 0.949 18 N -0.717 5.717 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.092 3.908 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.065 0.935 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -1.527 22.242 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.082 4.082 4 C -0.050 4.050 5 O 0.033 5.967 6 N -0.065 5.065 7 C -0.108 4.108 8 C -0.136 4.136 9 C -0.242 4.242 10 C 0.378 3.622 11 O -0.402 6.402 12 N -0.325 5.325 13 C -0.014 4.014 14 C -0.168 4.168 15 C -0.164 4.164 16 C 0.058 3.942 17 H 0.069 0.931 18 N -0.358 5.358 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.032 4.032 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.048 -0.824 22.831 22.846 hybrid contribution -0.226 0.463 -1.536 1.620 sum -0.273 -0.360 21.295 21.300 Atomic orbital electron populations 1.21751 0.94518 1.02359 1.02269 1.21586 0.96773 0.94545 1.03181 1.20364 0.82961 0.99536 1.05336 1.24592 0.95646 0.99693 0.85107 1.84508 1.11117 1.68056 1.32970 1.73604 0.95911 1.20342 1.16599 1.24758 0.96156 1.00944 0.88950 1.20237 0.89619 1.04053 0.99680 1.22008 0.92897 1.13825 0.95463 1.16960 0.77427 0.84076 0.83785 1.90837 1.50960 1.30948 1.67489 1.48220 1.67440 1.04811 1.12050 1.21730 0.99678 0.84411 0.95606 1.21885 0.98917 0.99488 0.96488 1.21835 1.01631 0.98763 0.94208 1.20469 0.95726 0.92561 0.85463 0.93096 1.42370 1.64675 1.26644 1.02089 1.19266 1.28196 1.00892 0.89177 0.91024 1.24737 1.00456 0.98017 0.97287 1.69655 1.41832 1.29387 1.17079 0.86203 0.77539 0.81270 0.81312 1.21648 1.21703 1.20565 1.22884 0.99633 1.04048 0.76620 0.92210 0.92070 0.92407 0.91090 0.91168 0.88750 0.88202 0.89578 0.89954 0.89628 0.90764 0.91239 0.91600 0.90897 0.91971 0.91283 0.78026 0.93426 0.91716 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 3 C -0.04 -0.37 5.66 -27.88 -0.16 -0.53 16 4 C 0.01 0.15 6.80 -34.63 -0.24 -0.09 16 5 O 0.10 1.13 11.06 18.66 0.21 1.34 16 6 N -0.36 -4.65 12.01 34.78 0.42 -4.23 16 7 C 0.05 0.69 7.54 -79.77 -0.60 0.09 16 8 C -0.08 -0.82 10.49 36.00 0.38 -0.45 16 9 C -0.23 -3.16 4.19 -102.89 -0.43 -3.59 16 10 C 0.59 9.51 7.49 -12.53 -0.09 9.42 16 11 O -0.53 -10.64 16.52 5.27 0.09 -10.55 16 12 N -0.59 -8.76 2.97 -174.07 -0.52 -9.27 16 13 C 0.11 1.24 5.68 -3.71 -0.02 1.22 16 14 C -0.13 -1.48 6.09 -26.59 -0.16 -1.65 16 15 C -0.13 -1.88 5.35 -26.67 -0.14 -2.02 16 16 C 0.17 3.21 2.92 -67.83 -0.20 3.01 16 17 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 18 N -0.72 -17.29 5.13 -53.33 -0.27 -17.56 16 19 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 23 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.09 1.66 6.01 -3.73 -0.02 1.64 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.59 6.76 -51.93 -0.35 0.24 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.78 6.30 -51.93 -0.33 0.45 16 39 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.39 9.79 7.80 -40.82 -0.32 9.47 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.09 1.97 7.00 -51.93 -0.36 1.61 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -32.17 384.63 -7.94 -40.11 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.63 Total: 5.65 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.72 Total: -1.79 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.35 Total: -57.88 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.29 Total: -9.21 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.17 -7.94 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999146366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.060 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds