Wall clock time and date at job start Tue Mar 31 2020 13:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.46977 * 2 1 4 4 N 1.30613 * 125.42179 * 90.02781 * 3 2 1 5 5 C 1.33691 * 108.99605 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.27467 * 180.02562 * 5 4 3 7 7 C 1.36343 * 107.45379 * 0.02562 * 5 4 3 8 8 C 1.46714 * 126.64387 * 179.97438 * 7 5 4 9 9 O 1.21680 * 120.00390 * 4.16626 * 8 7 5 10 10 N 1.34784 * 119.99676 * 184.16707 * 8 7 5 11 11 C 1.46496 * 120.00027 * 4.85126 * 10 8 7 12 12 C 1.46500 * 119.99650 * 184.57885 * 10 8 7 13 13 C 1.53041 * 109.46140 * 240.30179 * 12 10 8 14 14 C 1.53190 * 109.31191 * 178.60533 * 13 12 10 15 15 N 1.46925 * 108.77052 * 54.65560 * 14 13 12 16 16 C 1.36931 * 120.63376 * 126.40580 * 15 14 13 17 17 H 1.08001 * 119.99901 * 326.87049 * 16 15 14 18 18 C 1.38808 * 120.00361 * 146.87407 * 16 15 14 19 19 N 1.31621 * 119.99762 * 347.76046 * 18 16 15 20 20 Si 1.86800 * 120.00298 * 167.75679 * 18 16 15 21 21 H 1.48501 * 109.47255 * 89.99941 * 20 18 16 22 22 H 1.48501 * 109.47201 * 210.00114 * 20 18 16 23 23 H 1.48506 * 109.47025 * 329.99881 * 20 18 16 24 24 C 1.46933 * 118.73556 * 306.38444 * 15 14 13 25 25 C 1.53046 * 109.46027 * 120.24836 * 12 10 8 26 26 O 1.33668 * 125.42247 * 270.30903 * 3 2 1 27 27 H 1.08999 * 109.47008 * 300.00094 * 1 2 3 28 28 H 1.09000 * 109.47046 * 59.99309 * 1 2 3 29 29 H 1.08989 * 109.46844 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47083 * 240.00405 * 2 1 3 31 31 H 1.09001 * 109.46991 * 120.00139 * 2 1 3 32 32 H 1.08995 * 109.47313 * 269.98212 * 6 5 4 33 33 H 1.09006 * 109.47019 * 29.98105 * 6 5 4 34 34 H 1.09001 * 109.47243 * 149.97945 * 6 5 4 35 35 H 1.08994 * 109.47704 * 275.29119 * 11 10 8 36 36 H 1.09001 * 109.47048 * 35.29730 * 11 10 8 37 37 H 1.09003 * 109.46580 * 155.28704 * 11 10 8 38 38 H 1.09005 * 109.46416 * 0.27952 * 12 10 8 39 39 H 1.08995 * 109.49335 * 298.56865 * 13 12 10 40 40 H 1.09002 * 109.49401 * 58.66345 * 13 12 10 41 41 H 1.09009 * 109.59725 * 294.86556 * 14 13 12 42 42 H 1.09002 * 109.70290 * 174.50871 * 14 13 12 43 43 H 0.97003 * 120.00015 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.58456 * 293.82056 * 24 15 14 45 45 H 1.08996 * 109.70071 * 173.46163 * 24 15 14 46 46 H 1.09005 * 109.49615 * 301.33861 * 25 12 10 47 47 H 1.08995 * 109.49740 * 61.42800 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2852 2.1344 1.0644 5 6 2.7130 3.3433 0.6863 6 6 3.1137 4.4732 1.5996 7 6 2.7203 3.3667 -0.6769 8 6 3.1174 4.4913 -1.5313 9 8 3.5587 5.5091 -1.0313 10 7 2.9932 4.3972 -2.8701 11 6 2.3640 3.2160 -3.4661 12 6 3.4820 5.4787 -3.7288 13 6 2.3178 6.0507 -4.5410 14 6 2.8259 7.2041 -5.4118 15 7 3.9499 6.7221 -6.2260 16 6 3.9423 6.8758 -7.5866 17 1 3.0096 6.8336 -8.1296 18 6 5.1332 7.0857 -8.2682 19 7 6.2302 7.3768 -7.6018 20 14 5.1789 6.9550 -10.1310 21 1 4.8916 8.2842 -10.7277 22 1 6.5248 6.4992 -10.5624 23 1 4.1566 5.9777 -10.5839 24 6 5.0827 6.0725 -5.5524 25 6 4.5492 4.9320 -4.6798 26 8 2.2851 2.1533 -1.0892 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.2417 5.0888 1.8202 33 1 3.5148 4.0655 2.5275 34 1 3.8745 5.0824 1.1116 35 1 3.1072 2.4269 -3.5798 36 1 1.5596 2.8671 -2.8185 37 1 1.9570 3.4755 -4.4434 38 1 3.9150 6.2656 -3.1111 39 1 1.9005 5.2705 -5.1776 40 1 1.5475 6.4187 -3.8632 41 1 3.1607 8.0230 -4.7750 42 1 2.0251 7.5524 -6.0642 43 1 7.0624 7.5239 -8.0780 44 1 5.6015 6.7991 -4.9270 45 1 5.7718 5.6721 -6.2958 46 1 5.3674 4.5036 -4.1008 47 1 4.1106 4.1624 -5.3150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006248377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:09 Heat of formation + Delta-G solvation = -16.552424 kcal Electronic energy + Delta-G solvation = -27935.257875 eV Core-core repulsion = 24119.457088 eV Total energy + Delta-G solvation = -3815.800787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.59197 -41.18247 -39.07562 -37.02009 -36.17226 -35.18792 -34.29242 -32.18927 -31.72728 -31.35502 -28.98848 -28.10895 -26.94806 -25.74366 -24.07066 -23.89248 -22.70926 -22.30600 -21.23984 -20.53093 -18.82660 -18.45462 -18.21057 -17.62618 -17.00398 -16.78907 -16.26443 -15.79821 -15.74294 -15.41002 -15.14043 -14.89703 -14.76493 -14.50954 -14.28632 -14.27285 -14.09837 -13.96644 -13.64160 -13.28902 -13.21995 -13.15829 -12.99161 -12.67037 -12.61455 -12.52999 -12.18351 -12.12906 -12.05927 -12.01090 -11.91464 -11.84612 -11.54826 -11.38790 -11.16823 -10.58643 -10.09195 -9.65745 -8.65034 -7.88604 -5.40975 -0.33584 1.21704 1.25611 1.48188 1.48847 1.58728 1.87366 1.89347 2.50728 2.78958 3.28980 3.38273 3.58816 3.63881 3.81949 3.98768 4.09476 4.14419 4.16769 4.21841 4.28148 4.38623 4.42487 4.53565 4.58868 4.61985 4.63478 4.67576 4.75515 4.82117 4.83950 4.96405 4.97552 5.00100 5.02178 5.04486 5.10435 5.23680 5.27160 5.34485 5.39743 5.45806 5.63768 5.66506 6.12545 6.40619 6.47381 6.81258 7.14083 7.81634 8.37441 9.18533 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.002830 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.028325 B = 9892.092102 C =10498.815951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.030 4.030 3 C 0.228 3.772 4 N -0.510 5.510 5 C 0.075 3.925 6 C -0.080 4.080 7 C -0.134 4.134 8 C 0.600 3.400 9 O -0.549 6.549 10 N -0.595 5.595 11 C 0.077 3.923 12 C 0.156 3.844 13 C -0.122 4.122 14 C 0.145 3.855 15 N -0.608 5.608 16 C -0.265 4.265 17 H 0.069 0.931 18 C -0.048 4.048 19 N -0.937 5.937 20 Si 0.970 3.030 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.266 1.266 24 C 0.186 3.814 25 C -0.127 4.127 26 O -0.180 6.180 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.009 0.991 42 H 0.065 0.935 43 H 0.251 0.749 44 H -0.007 1.007 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 -17.145 15.265 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.068 4.068 3 C 0.023 3.977 4 N -0.240 5.240 5 C -0.049 4.049 6 C -0.137 4.137 7 C -0.189 4.189 8 C 0.389 3.611 9 O -0.430 6.430 10 N -0.325 5.325 11 C -0.065 4.065 12 C 0.053 3.947 13 C -0.162 4.162 14 C 0.019 3.981 15 N -0.331 5.331 16 C -0.395 4.395 17 H 0.087 0.913 18 C -0.243 4.243 19 N -0.582 5.582 20 Si 0.798 3.202 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.191 1.191 24 C 0.059 3.941 25 C -0.167 4.167 26 O -0.068 6.068 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.027 0.973 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.011 0.989 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.816 -16.827 15.966 26.032 hybrid contribution 0.728 0.715 -1.633 1.925 sum -11.087 -16.112 14.333 24.248 Atomic orbital electron populations 1.21786 0.91807 1.04612 1.02322 1.20553 0.97642 0.81142 1.07467 1.27693 0.94194 0.97604 0.78255 1.70383 1.19152 1.03546 1.30882 1.22380 0.96426 0.94626 0.91441 1.20410 1.02880 0.92754 0.97616 1.22573 1.14551 0.86852 0.94904 1.16668 0.78260 0.84411 0.81796 1.90818 1.48231 1.29873 1.74030 1.47993 1.58342 1.21474 1.04704 1.22038 0.98218 0.86105 1.00136 1.20949 0.94870 0.88352 0.90494 1.22191 0.96659 0.99277 0.98083 1.20997 0.90600 0.93588 0.92943 1.44270 1.19257 1.66711 1.02908 1.19484 0.93597 1.43221 0.83228 0.91330 1.25998 0.96624 0.99327 1.02372 1.70162 1.00297 1.51760 1.36010 0.85246 0.76793 0.77924 0.80270 1.21185 1.22030 1.19052 1.20444 0.89502 0.90967 0.93159 1.22309 0.97659 0.99424 0.97352 1.84639 1.63478 1.21656 1.36993 0.92850 0.92452 0.88128 0.86155 0.85848 0.89226 0.88977 0.89950 0.91527 0.89805 0.89224 0.90749 0.90735 0.90943 0.97266 0.91690 0.94043 0.98899 0.92576 0.92474 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.90 71.98 0.71 -0.36 16 2 C -0.03 -0.27 6.56 29.85 0.20 -0.07 16 3 C 0.23 4.37 7.57 88.29 0.67 5.04 16 4 N -0.51 -12.23 11.26 -291.05 -3.28 -15.50 16 5 C 0.08 2.00 7.16 41.83 0.30 2.30 16 6 C -0.08 -1.85 9.92 71.24 0.71 -1.14 16 7 C -0.13 -3.72 6.75 24.04 0.16 -3.56 16 8 C 0.60 19.33 7.64 86.46 0.66 19.99 16 9 O -0.55 -20.64 14.11 -4.28 -0.06 -20.70 16 10 N -0.60 -17.82 2.76 -827.10 -2.28 -20.11 16 11 C 0.08 1.73 8.45 127.77 1.08 2.81 16 12 C 0.16 5.47 2.47 45.02 0.11 5.58 16 13 C -0.12 -4.10 5.32 30.67 0.16 -3.94 16 14 C 0.14 6.02 6.52 86.36 0.56 6.58 16 15 N -0.61 -30.39 2.97 -699.09 -2.08 -32.47 16 16 C -0.27 -14.35 9.55 84.03 0.80 -13.55 16 17 H 0.07 3.57 7.86 -2.91 -0.02 3.55 16 18 C -0.05 -2.63 5.00 84.86 0.42 -2.21 16 19 N -0.94 -55.62 11.28 21.65 0.24 -55.38 16 20 Si 0.97 44.21 29.57 68.60 2.03 46.24 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 C 0.19 9.06 5.24 86.36 0.45 9.52 16 25 C -0.13 -4.85 5.34 30.67 0.16 -4.69 16 26 O -0.18 -4.05 7.67 -7.14 -0.05 -4.11 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.08 2.19 6.39 -2.39 -0.02 2.17 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.68 5.88 -2.39 -0.01 1.66 16 37 H 0.09 1.92 6.47 -2.39 -0.02 1.91 16 38 H 0.07 3.01 6.91 -2.38 -0.02 2.99 16 39 H 0.07 2.34 6.72 -2.39 -0.02 2.33 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.06 2.58 7.93 -2.39 -0.02 2.56 16 43 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 44 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 45 H 0.06 3.06 6.31 -2.39 -0.02 3.05 16 46 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 47 H 0.07 2.49 7.72 -2.39 -0.02 2.47 16 Total: -1.00 -69.96 372.53 2.65 -67.31 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.96 Total: 12.42 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 7.16 Total: 22.30 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -7.39 Total: -123.46 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.12 Total: -24.81 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.96 2.65 -67.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006248377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.753 kcal (2) G-P(sol) polarization free energy of solvation -69.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds