Wall clock time and date at job start Tue Mar 31 2020 12:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47357 * 2 1 4 4 O 1.33491 * 126.82994 * 269.97160 * 3 2 1 5 5 N 1.20655 * 113.16042 * 180.02562 * 4 3 2 6 6 C 1.30013 * 112.30038 * 359.71720 * 5 4 3 7 7 C 1.50705 * 127.33824 * 180.30068 * 6 5 4 8 8 C 1.37361 * 126.82809 * 89.99802 * 3 2 1 9 9 C 1.47393 * 128.56685 * 359.95648 * 8 3 2 10 10 O 1.21606 * 119.99764 * 90.00261 * 9 8 3 11 11 N 1.34775 * 120.00217 * 269.99942 * 9 8 3 12 12 C 1.46500 * 120.00014 * 359.97438 * 11 9 8 13 13 C 1.46507 * 120.00359 * 180.02562 * 11 9 8 14 14 C 1.53036 * 109.45897 * 240.00340 * 13 11 9 15 15 C 1.53191 * 109.31166 * 178.61271 * 14 13 11 16 16 N 1.46926 * 108.89452 * 54.56289 * 15 14 13 17 17 C 1.36934 * 120.63630 * 126.46229 * 16 15 14 18 18 H 1.08000 * 119.99464 * 331.92669 * 17 16 15 19 19 C 1.38810 * 120.00385 * 151.92945 * 17 16 15 20 20 N 1.31619 * 119.99689 * 343.17004 * 19 17 16 21 21 Si 1.86795 * 119.99988 * 163.17171 * 19 17 16 22 22 H 1.48503 * 109.47611 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47271 * 120.00121 * 21 19 17 24 24 H 1.48496 * 109.47355 * 239.99904 * 21 19 17 25 25 C 1.46973 * 118.71425 * 306.64410 * 16 15 14 26 26 C 1.53043 * 109.45897 * 119.93020 * 13 11 9 27 27 H 1.09004 * 109.47267 * 300.00756 * 1 2 3 28 28 H 1.08999 * 109.46742 * 60.00037 * 1 2 3 29 29 H 1.08992 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47180 * 239.99787 * 2 1 3 31 31 H 1.08999 * 109.46742 * 119.99963 * 2 1 3 32 32 H 1.08996 * 109.46869 * 270.14522 * 7 6 5 33 33 H 1.08996 * 109.46746 * 30.14702 * 7 6 5 34 34 H 1.09001 * 109.47242 * 150.14452 * 7 6 5 35 35 H 1.08994 * 109.47201 * 270.00443 * 12 11 9 36 36 H 1.09000 * 109.46830 * 30.00191 * 12 11 9 37 37 H 1.08996 * 109.47301 * 149.99881 * 12 11 9 38 38 H 1.08996 * 109.45453 * 359.97332 * 13 11 9 39 39 H 1.09001 * 109.50071 * 58.66060 * 14 13 11 40 40 H 1.09005 * 109.49477 * 298.56396 * 14 13 11 41 41 H 1.09000 * 109.58954 * 174.41929 * 15 14 13 42 42 H 1.08996 * 109.58649 * 294.70243 * 15 14 13 43 43 H 0.97000 * 119.99637 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.46458 * 293.56938 * 25 16 15 45 45 H 1.08992 * 109.71060 * 173.28601 * 25 16 15 46 46 H 1.08995 * 109.49931 * 301.34255 * 26 13 11 47 47 H 1.08997 * 109.49588 * 61.40711 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2997 2.1750 -1.0685 5 7 2.6908 3.2802 -0.7834 6 6 2.7501 3.4662 0.5020 7 6 3.1833 4.7150 1.2259 8 6 2.3069 2.1970 1.0995 9 6 2.1821 1.8470 2.5258 10 8 3.1233 1.3509 3.1147 11 7 1.0249 2.0767 3.1774 12 6 -0.1088 2.6749 2.4681 13 6 0.9010 1.7292 4.5952 14 6 -0.2256 0.7089 4.7736 15 6 -0.3293 0.3220 6.2522 16 7 -0.4888 1.5432 7.0535 17 6 -1.5301 1.6690 7.9338 18 1 -2.4559 1.1428 7.7539 19 6 -1.3958 2.4729 9.0575 20 7 -0.1995 2.8448 9.4613 21 14 -2.9126 3.0269 9.9963 22 1 -4.1276 2.4777 9.3424 23 1 -2.8368 2.5336 11.3949 24 1 -2.9797 4.5103 9.9977 25 6 0.4884 2.6285 6.8888 26 6 0.5830 2.9895 5.4031 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.2582 4.6782 1.4024 33 1 2.9444 5.5882 0.6188 34 1 2.6604 4.7819 2.1800 35 1 -0.0578 3.7604 2.5516 36 1 -0.0713 2.3892 1.4169 37 1 -1.0408 2.3200 2.9080 38 1 1.8390 1.2997 4.9470 39 1 -0.0098 -0.1790 4.1794 40 1 -1.1683 1.1468 4.4451 41 1 -1.1921 -0.3275 6.4003 42 1 0.5775 -0.1997 6.5578 43 1 -0.1056 3.4062 10.2467 44 1 1.4631 2.2970 7.2471 45 1 0.1677 3.5013 7.4573 46 1 1.3743 3.7247 5.2569 47 1 -0.3670 3.4061 5.0683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006391451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:18 Heat of formation + Delta-G solvation = 41.111228 kcal Electronic energy + Delta-G solvation = -28496.144593 eV Core-core repulsion = 24682.844289 eV Total energy + Delta-G solvation = -3813.300304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.04604 -39.96365 -37.47996 -35.30830 -34.96589 -34.68539 -32.47540 -30.68875 -30.19536 -29.61475 -28.95313 -26.97999 -25.76283 -24.49410 -23.79413 -22.24961 -21.96649 -20.42758 -19.50691 -18.94309 -17.94397 -17.54882 -16.83408 -16.58609 -16.02197 -15.48836 -14.93251 -14.59106 -14.41157 -13.99486 -13.74077 -13.60660 -13.55024 -13.38298 -13.20704 -13.06587 -12.96362 -12.73883 -12.62013 -12.50063 -12.30251 -11.91171 -11.68875 -11.53292 -11.17870 -11.12949 -10.86788 -10.76937 -10.44633 -10.24460 -10.19298 -10.10105 -9.97015 -9.77130 -9.59685 -9.50790 -8.59701 -8.39551 -6.72567 -5.82752 -3.25640 1.12709 1.74681 2.38473 2.64357 3.12579 3.34480 3.42592 3.44365 3.90133 4.03079 4.46039 4.47852 4.62724 4.78566 4.82646 4.97149 5.09385 5.22662 5.25645 5.27688 5.32052 5.37071 5.41057 5.46416 5.47890 5.49643 5.58575 5.60064 5.66127 5.79418 5.83436 5.88635 6.01082 6.17509 6.25372 6.41684 6.50863 6.56106 6.71357 6.81530 6.90138 7.29334 7.41066 7.61506 7.76238 8.04277 8.13093 8.40784 9.16914 9.80073 10.36858 11.26086 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.003200 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.703169 B = 8748.614401 C = 9241.458187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.047 4.047 3 C 0.014 3.986 4 O 0.096 5.904 5 N -0.358 5.358 6 C 0.054 3.946 7 C -0.078 4.078 8 C -0.237 4.237 9 C 0.594 3.406 10 O -0.528 6.528 11 N -0.594 5.594 12 C 0.076 3.924 13 C 0.145 3.855 14 C -0.138 4.138 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.174 3.826 26 C -0.144 4.144 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.091 0.909 46 H 0.051 0.949 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -1.432 -20.095 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.085 4.085 3 C -0.050 4.050 4 O 0.034 5.966 5 N -0.064 5.064 6 C -0.108 4.108 7 C -0.135 4.135 8 C -0.244 4.244 9 C 0.379 3.621 10 O -0.404 6.404 11 N -0.326 5.326 12 C -0.067 4.067 13 C 0.043 3.957 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.047 3.953 26 C -0.185 4.185 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.109 0.891 46 H 0.070 0.930 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.563 -0.852 -20.669 20.845 hybrid contribution -0.800 0.204 1.167 1.429 sum 1.763 -0.648 -19.502 19.592 Atomic orbital electron populations 1.21857 0.92855 1.03375 1.03027 1.20252 0.97118 0.85854 1.05303 1.24631 0.98895 0.96343 0.85098 1.84510 1.61630 1.17498 1.32970 1.73601 1.17566 0.98688 1.16586 1.24751 1.00500 0.96560 0.88966 1.20229 1.02588 0.91073 0.99634 1.21989 1.11767 0.95260 0.95388 1.16954 0.82874 0.78360 0.83861 1.90822 1.38241 1.43781 1.67571 1.48098 1.12033 1.60683 1.11754 1.21798 0.89941 0.98373 0.96608 1.21289 1.00562 0.96593 0.77232 1.22381 0.97834 0.97505 1.00062 1.20855 0.98885 0.89913 0.88264 1.44088 1.30325 1.11801 1.45262 1.19209 0.91428 1.27466 1.00226 0.91601 1.25057 0.96246 1.01995 0.96253 1.70037 1.20442 1.38909 1.25160 0.86239 0.82703 0.78323 0.79592 1.20253 1.21700 1.21571 1.20761 0.92083 0.93400 0.89016 1.22556 1.00350 0.95604 0.99949 0.91662 0.91839 0.90734 0.88720 0.88224 0.89578 0.89940 0.89716 0.92554 0.91714 0.90111 0.88498 0.92843 0.91969 0.92407 0.96166 0.93619 0.96099 0.89126 0.93047 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.86 37.16 0.37 -0.68 16 2 C -0.05 -0.38 6.38 -27.88 -0.18 -0.55 16 3 C 0.01 0.15 6.50 -34.63 -0.23 -0.07 16 4 O 0.10 1.12 11.06 18.66 0.21 1.33 16 5 N -0.36 -4.59 12.01 34.78 0.42 -4.17 16 6 C 0.05 0.68 7.59 -79.76 -0.61 0.07 16 7 C -0.08 -0.79 10.49 36.01 0.38 -0.41 16 8 C -0.24 -3.09 4.47 -102.89 -0.46 -3.55 16 9 C 0.59 9.09 7.46 -12.53 -0.09 8.99 16 10 O -0.53 -10.06 16.43 5.27 0.09 -9.97 16 11 N -0.59 -8.45 2.76 -175.17 -0.48 -8.93 16 12 C 0.08 0.86 9.02 59.85 0.54 1.40 16 13 C 0.14 2.44 2.48 -67.89 -0.17 2.27 16 14 C -0.14 -2.26 5.31 -26.61 -0.14 -2.40 16 15 C 0.15 2.98 6.51 -3.71 -0.02 2.96 16 16 N -0.59 -14.30 3.00 -172.29 -0.52 -14.82 16 17 C -0.25 -6.74 9.58 -15.06 -0.14 -6.89 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -25.68 11.20 55.49 0.62 -25.06 16 21 Si 0.90 21.16 29.59 -169.99 -5.03 16.14 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.17 4.03 5.30 -3.69 -0.02 4.01 16 26 C -0.14 -2.66 5.34 -26.61 -0.14 -2.80 16 27 H 0.06 0.52 6.31 -51.93 -0.33 0.19 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.64 5.17 -51.93 -0.27 0.37 16 37 H 0.08 0.89 6.46 -51.93 -0.34 0.55 16 38 H 0.10 1.87 6.90 -51.93 -0.36 1.52 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.99 6.73 -51.93 -0.35 0.64 16 41 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 1.06 7.72 -51.93 -0.40 0.65 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -31.48 375.74 -7.43 -38.90 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.39 Total: -1.43 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.00 Total: 2.35 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.04 Total: -52.98 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.29 Total: -8.64 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.48 -7.43 -38.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006391451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.016 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds