Wall clock time and date at job start Tue Mar 31 2020 12:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47357 * 2 1 4 4 O 1.33491 * 126.82994 * 269.97160 * 3 2 1 5 5 N 1.20655 * 113.16042 * 180.02562 * 4 3 2 6 6 C 1.30013 * 112.30038 * 359.71720 * 5 4 3 7 7 C 1.50705 * 127.33824 * 180.30068 * 6 5 4 8 8 C 1.37361 * 126.82809 * 89.99802 * 3 2 1 9 9 C 1.47393 * 128.56685 * 359.95648 * 8 3 2 10 10 O 1.21606 * 119.99764 * 90.00261 * 9 8 3 11 11 N 1.34775 * 120.00217 * 269.99942 * 9 8 3 12 12 C 1.46500 * 120.00014 * 359.97438 * 11 9 8 13 13 C 1.46507 * 120.00359 * 180.02562 * 11 9 8 14 14 C 1.53036 * 109.45897 * 240.00340 * 13 11 9 15 15 C 1.53191 * 109.31166 * 178.61271 * 14 13 11 16 16 N 1.46926 * 108.89452 * 54.56289 * 15 14 13 17 17 C 1.36934 * 120.63630 * 126.46229 * 16 15 14 18 18 H 1.08000 * 119.99464 * 331.92669 * 17 16 15 19 19 C 1.38810 * 120.00385 * 151.92945 * 17 16 15 20 20 N 1.31619 * 119.99689 * 343.17004 * 19 17 16 21 21 Si 1.86795 * 119.99988 * 163.17171 * 19 17 16 22 22 H 1.48503 * 109.47611 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47271 * 120.00121 * 21 19 17 24 24 H 1.48496 * 109.47355 * 239.99904 * 21 19 17 25 25 C 1.46973 * 118.71425 * 306.64410 * 16 15 14 26 26 C 1.53043 * 109.45897 * 119.93020 * 13 11 9 27 27 H 1.09004 * 109.47267 * 300.00756 * 1 2 3 28 28 H 1.08999 * 109.46742 * 60.00037 * 1 2 3 29 29 H 1.08992 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47180 * 239.99787 * 2 1 3 31 31 H 1.08999 * 109.46742 * 119.99963 * 2 1 3 32 32 H 1.08996 * 109.46869 * 270.14522 * 7 6 5 33 33 H 1.08996 * 109.46746 * 30.14702 * 7 6 5 34 34 H 1.09001 * 109.47242 * 150.14452 * 7 6 5 35 35 H 1.08994 * 109.47201 * 270.00443 * 12 11 9 36 36 H 1.09000 * 109.46830 * 30.00191 * 12 11 9 37 37 H 1.08996 * 109.47301 * 149.99881 * 12 11 9 38 38 H 1.08996 * 109.45453 * 359.97332 * 13 11 9 39 39 H 1.09001 * 109.50071 * 58.66060 * 14 13 11 40 40 H 1.09005 * 109.49477 * 298.56396 * 14 13 11 41 41 H 1.09000 * 109.58954 * 174.41929 * 15 14 13 42 42 H 1.08996 * 109.58649 * 294.70243 * 15 14 13 43 43 H 0.97000 * 119.99637 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.46458 * 293.56938 * 25 16 15 45 45 H 1.08992 * 109.71060 * 173.28601 * 25 16 15 46 46 H 1.08995 * 109.49931 * 301.34255 * 26 13 11 47 47 H 1.08997 * 109.49588 * 61.40711 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2997 2.1750 -1.0685 5 7 2.6908 3.2802 -0.7834 6 6 2.7501 3.4662 0.5020 7 6 3.1833 4.7150 1.2259 8 6 2.3069 2.1970 1.0995 9 6 2.1821 1.8470 2.5258 10 8 3.1233 1.3509 3.1147 11 7 1.0249 2.0767 3.1774 12 6 -0.1088 2.6749 2.4681 13 6 0.9010 1.7292 4.5952 14 6 -0.2256 0.7089 4.7736 15 6 -0.3293 0.3220 6.2522 16 7 -0.4888 1.5432 7.0535 17 6 -1.5301 1.6690 7.9338 18 1 -2.4559 1.1428 7.7539 19 6 -1.3958 2.4729 9.0575 20 7 -0.1995 2.8448 9.4613 21 14 -2.9126 3.0269 9.9963 22 1 -4.1276 2.4777 9.3424 23 1 -2.8368 2.5336 11.3949 24 1 -2.9797 4.5103 9.9977 25 6 0.4884 2.6285 6.8888 26 6 0.5830 2.9895 5.4031 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.2582 4.6782 1.4024 33 1 2.9444 5.5882 0.6188 34 1 2.6604 4.7819 2.1800 35 1 -0.0578 3.7604 2.5516 36 1 -0.0713 2.3892 1.4169 37 1 -1.0408 2.3200 2.9080 38 1 1.8390 1.2997 4.9470 39 1 -0.0098 -0.1790 4.1794 40 1 -1.1683 1.1468 4.4451 41 1 -1.1921 -0.3275 6.4003 42 1 0.5775 -0.1997 6.5578 43 1 -0.1056 3.4062 10.2467 44 1 1.4631 2.2970 7.2471 45 1 0.1677 3.5013 7.4573 46 1 1.3743 3.7247 5.2569 47 1 -0.3670 3.4061 5.0683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006391451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:17 Heat of formation + Delta-G solvation = 23.298766 kcal Electronic energy + Delta-G solvation = -28496.916999 eV Core-core repulsion = 24682.844289 eV Total energy + Delta-G solvation = -3814.072710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.97695 -41.22946 -39.03209 -36.64998 -35.88918 -35.59706 -34.20222 -32.04584 -31.53673 -31.09795 -29.81395 -28.07010 -27.27278 -25.76374 -24.62395 -23.88283 -23.47752 -21.49215 -20.72170 -20.31564 -18.90370 -18.80036 -18.46070 -17.75625 -17.19498 -16.80037 -16.44078 -15.76905 -15.50610 -15.37988 -15.13740 -14.86051 -14.68661 -14.42101 -14.36837 -14.17730 -14.13009 -13.94511 -13.86562 -13.45697 -13.29143 -13.18580 -13.02527 -12.63739 -12.54823 -12.49995 -12.44080 -12.12653 -11.95592 -11.89133 -11.82817 -11.50012 -11.41691 -11.18754 -10.95830 -10.56693 -10.44827 -9.72215 -8.70419 -7.86883 -5.32762 0.23513 0.79648 1.22136 1.48145 1.50552 1.60718 1.66943 2.06482 2.52611 2.99417 3.18042 3.29679 3.49051 3.66168 3.81801 3.89009 4.03598 4.09612 4.13655 4.23552 4.27231 4.32951 4.45822 4.46197 4.50996 4.53167 4.63892 4.66086 4.68684 4.77610 4.85683 4.86311 4.98564 5.01334 5.03403 5.06441 5.07043 5.13452 5.30415 5.34174 5.44521 5.51028 5.65405 5.70325 6.24651 6.39598 6.93893 7.13934 7.14780 7.84951 8.37751 9.20492 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.003200 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.703169 B = 8748.614401 C = 9241.458187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.049 4.049 3 C 0.035 3.965 4 O 0.097 5.903 5 N -0.371 5.371 6 C 0.051 3.949 7 C -0.079 4.079 8 C -0.264 4.264 9 C 0.601 3.399 10 O -0.573 6.573 11 N -0.587 5.587 12 C 0.073 3.927 13 C 0.155 3.845 14 C -0.121 4.121 15 C 0.143 3.857 16 N -0.608 5.608 17 C -0.260 4.260 18 H 0.072 0.928 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.291 1.291 25 C 0.182 3.818 26 C -0.127 4.127 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.008 0.992 43 H 0.249 0.751 44 H -0.010 1.010 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -1.793 -22.578 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.087 4.087 3 C -0.029 4.029 4 O 0.037 5.963 5 N -0.079 5.079 6 C -0.111 4.111 7 C -0.136 4.136 8 C -0.271 4.271 9 C 0.388 3.612 10 O -0.452 6.452 11 N -0.317 5.317 12 C -0.069 4.069 13 C 0.052 3.948 14 C -0.160 4.160 15 C 0.017 3.983 16 N -0.332 5.332 17 C -0.390 4.390 18 H 0.090 0.910 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.187 1.187 23 H -0.223 1.223 24 H -0.218 1.218 25 C 0.055 3.945 26 C -0.167 4.167 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.008 0.992 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.786 -1.223 -23.207 23.252 hybrid contribution -0.219 0.245 1.903 1.931 sum 0.567 -0.978 -21.304 21.334 Atomic orbital electron populations 1.21859 0.91497 1.04496 1.02930 1.20470 0.98123 0.83963 1.06160 1.25134 0.96647 0.96900 0.84188 1.84503 1.61430 1.17349 1.33000 1.73598 1.18405 0.99272 1.16645 1.25075 1.00031 0.97022 0.88974 1.20321 1.02746 0.90949 0.99612 1.21769 1.14451 0.96430 0.94442 1.17152 0.82213 0.77312 0.84562 1.90801 1.39765 1.45887 1.68780 1.47967 1.12823 1.60338 1.10559 1.22013 0.88827 0.98721 0.97340 1.20915 0.99489 0.95701 0.78711 1.22174 0.98140 0.98328 0.97387 1.21005 0.98590 0.88612 0.90074 1.44339 1.29927 1.13367 1.45548 1.19574 0.92216 1.26854 1.00325 0.91006 1.25819 0.98701 1.02622 0.97465 1.70201 1.22495 1.39946 1.25689 0.85215 0.79962 0.77460 0.77849 1.18704 1.22295 1.21784 1.20503 0.90221 0.92039 0.91709 1.22279 1.01142 0.96557 0.96713 0.92682 0.90954 0.89070 0.86174 0.89057 0.89220 0.88206 0.89952 0.91781 0.89956 0.89226 0.91252 0.90428 0.90547 0.91640 0.97413 0.94177 0.99212 0.92246 0.92468 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.86 71.98 0.71 -0.83 16 2 C -0.05 -0.65 6.38 29.85 0.19 -0.46 16 3 C 0.04 0.69 6.50 25.48 0.17 0.86 16 4 O 0.10 2.07 11.06 77.01 0.85 2.92 16 5 N -0.37 -8.87 12.01 -44.78 -0.54 -9.41 16 6 C 0.05 1.20 7.59 45.16 0.34 1.54 16 7 C -0.08 -1.50 10.49 71.24 0.75 -0.75 16 8 C -0.26 -6.49 4.47 -18.74 -0.08 -6.57 16 9 C 0.60 17.86 7.46 86.65 0.65 18.51 16 10 O -0.57 -22.03 16.43 -4.05 -0.07 -22.10 16 11 N -0.59 -15.77 2.76 -826.37 -2.28 -18.05 16 12 C 0.07 1.44 9.02 127.77 1.15 2.59 16 13 C 0.15 5.11 2.48 45.02 0.11 5.22 16 14 C -0.12 -3.72 5.31 30.67 0.16 -3.55 16 15 C 0.14 5.69 6.51 86.36 0.56 6.26 16 16 N -0.61 -29.65 3.00 -699.01 -2.10 -31.75 16 17 C -0.26 -13.80 9.58 84.03 0.81 -12.99 16 18 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 19 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 20 N -0.94 -55.09 11.20 21.65 0.24 -54.85 16 21 Si 0.97 43.80 29.59 68.60 2.03 45.83 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 C 0.18 8.70 5.30 86.35 0.46 9.16 16 26 C -0.13 -4.64 5.34 30.67 0.16 -4.48 16 27 H 0.05 0.69 6.31 -2.38 -0.02 0.67 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.43 8.11 -2.39 -0.02 1.41 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.37 5.17 -2.39 -0.01 1.35 16 37 H 0.09 1.65 6.46 -2.39 -0.02 1.63 16 38 H 0.07 2.73 6.90 -2.39 -0.02 2.72 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 2.19 6.73 -2.38 -0.02 2.17 16 41 H 0.07 2.47 7.93 -2.39 -0.02 2.46 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 44 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 45 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 46 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.07 2.40 7.72 -2.39 -0.02 2.38 16 Total: -1.00 -69.77 375.74 5.66 -64.11 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.97 Total: 11.16 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.55 Total: 12.13 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -4.67 Total: -114.05 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.79 Total: -19.18 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -69.77 5.66 -64.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006391451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.405 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds