Wall clock time and date at job start Tue Mar 31 2020 13:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47095 * 2 1 4 4 C 1.50707 * 109.47075 * 179.97438 * 3 2 1 5 5 O 1.33489 * 126.82835 * 270.17443 * 4 3 2 6 6 N 1.20661 * 113.15366 * 180.30484 * 5 4 3 7 7 C 1.30008 * 112.30060 * 359.71653 * 6 5 4 8 8 C 1.50701 * 127.33314 * 180.02562 * 7 6 5 9 9 C 1.37361 * 126.82762 * 89.99554 * 4 3 2 10 10 C 1.47393 * 128.56304 * 0.02562 * 9 4 3 11 11 O 1.21613 * 120.00103 * 269.41936 * 10 9 4 12 12 N 1.34776 * 120.00147 * 89.70032 * 10 9 4 13 13 C 1.46498 * 120.00268 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.49663 * 35.00114 * 13 12 10 15 15 C 1.53040 * 109.50030 * 155.06239 * 13 12 10 16 16 C 1.53033 * 109.54034 * 181.28697 * 15 13 12 17 17 C 1.53196 * 109.34170 * 298.68500 * 16 15 13 18 18 N 1.46925 * 108.77365 * 54.61922 * 17 16 15 19 19 C 1.36938 * 120.63075 * 126.37260 * 18 17 16 20 20 H 1.07994 * 119.99561 * 207.69151 * 19 18 17 21 21 C 1.38816 * 119.99740 * 27.69247 * 19 18 17 22 22 N 1.31622 * 120.00244 * 17.36278 * 21 19 18 23 23 Si 1.86805 * 119.99641 * 197.36202 * 21 19 18 24 24 H 1.48499 * 109.47013 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46959 * 120.00111 * 23 21 19 26 26 H 1.48495 * 109.46921 * 239.99891 * 23 21 19 27 27 C 1.46925 * 118.73809 * 306.39045 * 18 17 16 28 28 H 1.08995 * 109.47398 * 300.00759 * 1 2 3 29 29 H 1.09004 * 109.46877 * 59.99929 * 1 2 3 30 30 H 1.08994 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47137 * 239.99561 * 2 1 3 32 32 H 1.09004 * 109.46877 * 120.00071 * 2 1 3 33 33 H 1.08997 * 109.47011 * 59.99814 * 3 2 1 34 34 H 1.09000 * 109.46826 * 299.99735 * 3 2 1 35 35 H 1.09000 * 109.47335 * 269.95889 * 8 7 6 36 36 H 1.09006 * 109.47333 * 29.95839 * 8 7 6 37 37 H 1.08997 * 109.46963 * 149.95435 * 8 7 6 38 38 H 0.97007 * 119.99877 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.46397 * 301.34180 * 15 13 12 40 40 H 1.08999 * 109.45635 * 61.29791 * 15 13 12 41 41 H 1.09005 * 109.49902 * 178.71731 * 16 15 13 42 42 H 1.09003 * 109.50152 * 58.65391 * 16 15 13 43 43 H 1.09000 * 109.58156 * 294.82904 * 17 16 15 44 44 H 1.08992 * 109.58682 * 174.41043 * 17 16 15 45 45 H 0.96995 * 120.00095 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.59167 * 293.82266 * 27 18 17 47 47 H 1.08998 * 109.70267 * 173.46188 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.3468 1.4394 1.0695 6 7 5.5193 1.4461 0.7847 7 6 5.7148 1.4488 -0.5006 8 6 7.0369 1.4564 -1.2238 9 6 4.3709 1.4422 -1.0985 10 6 3.9997 1.4424 -2.5249 11 8 3.8565 0.3894 -3.1162 12 7 3.8245 2.6097 -3.1756 13 6 3.4562 2.6099 -4.5935 14 1 2.7984 1.7652 -4.7986 15 6 2.7326 3.9150 -4.9331 16 6 2.3190 3.9025 -6.4064 17 6 3.5706 3.8003 -7.2839 18 7 4.3470 2.6253 -6.8652 19 6 4.7152 1.6715 -7.7761 20 1 4.8681 0.6510 -7.4574 21 6 4.8917 2.0163 -9.1091 22 7 5.0453 3.2790 -9.4475 23 14 4.9115 0.6882 -10.4226 24 1 4.7202 -0.6400 -9.7865 25 1 3.8149 0.9355 -11.3930 26 1 6.2156 0.7134 -11.1324 27 6 4.7206 2.4931 -5.4504 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 7.3502 2.4858 -1.3975 36 1 7.7856 0.9461 -0.6178 37 1 6.9312 0.9426 -2.1793 38 1 3.9423 3.4497 -2.7049 39 1 1.8454 4.0119 -4.3072 40 1 3.3992 4.7578 -4.7507 41 1 1.7838 4.8224 -6.6419 42 1 1.6714 3.0463 -6.5954 43 1 4.1751 4.6994 -7.1642 44 1 3.2771 3.6912 -8.3279 45 1 5.1683 3.5199 -10.3790 46 1 5.4190 3.2855 -5.1811 47 1 5.1872 1.5224 -5.2827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007330373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:34 Heat of formation + Delta-G solvation = 24.546781 kcal Electronic energy + Delta-G solvation = -27869.817680 eV Core-core repulsion = 24055.799088 eV Total energy + Delta-G solvation = -3814.018592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.99855 -39.64368 -37.39547 -35.88930 -34.65348 -34.34756 -32.50515 -31.90878 -30.49593 -29.09126 -28.68116 -27.30434 -25.31524 -24.61622 -22.21737 -22.17887 -21.95706 -20.59709 -19.99636 -19.36714 -17.95028 -17.71852 -16.80379 -16.46021 -15.74744 -15.59132 -14.88399 -14.80581 -14.36241 -14.09799 -13.79493 -13.64676 -13.47521 -13.42445 -13.28999 -13.03273 -12.93181 -12.64130 -12.43888 -12.43229 -11.90308 -11.85370 -11.64353 -11.37029 -11.14237 -10.97611 -10.90549 -10.81159 -10.29992 -10.25348 -10.23997 -9.98239 -9.93083 -9.68731 -9.65183 -9.51053 -8.91384 -8.43159 -6.69972 -5.80060 -3.22240 1.15390 1.79299 2.47594 2.69938 3.32680 3.38246 3.46421 3.50446 3.99441 4.08065 4.50164 4.60290 4.62061 4.67673 4.90834 4.93626 5.21560 5.23546 5.29951 5.33308 5.34862 5.36134 5.44432 5.47932 5.50735 5.56480 5.58282 5.66758 5.77213 5.87053 5.93068 5.99089 6.02340 6.09323 6.19135 6.47477 6.56432 6.59513 6.64280 6.79039 6.92968 7.32942 7.61274 7.62346 7.82223 8.08322 8.27589 8.44321 9.20464 9.82624 10.37893 11.28661 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.003252 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.052430 B = 8607.242013 C = 9119.939138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.042 4.042 4 C 0.016 3.984 5 O 0.095 5.905 6 N -0.359 5.359 7 C 0.057 3.943 8 C -0.080 4.080 9 C -0.242 4.242 10 C 0.594 3.406 11 O -0.518 6.518 12 N -0.710 5.710 13 C 0.125 3.875 14 H 0.088 0.912 15 C -0.114 4.114 16 C -0.139 4.139 17 C 0.167 3.833 18 N -0.587 5.587 19 C -0.251 4.251 20 H 0.067 0.933 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.290 1.290 27 C 0.142 3.858 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.396 0.604 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.019 0.981 44 H 0.090 0.910 45 H 0.253 0.747 46 H 0.018 0.982 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.453 0.829 19.860 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.080 4.080 4 C -0.048 4.048 5 O 0.033 5.967 6 N -0.066 5.066 7 C -0.105 4.105 8 C -0.138 4.138 9 C -0.249 4.249 10 C 0.378 3.622 11 O -0.394 6.394 12 N -0.360 5.360 13 C 0.020 3.980 14 H 0.106 0.894 15 C -0.153 4.153 16 C -0.179 4.179 17 C 0.041 3.959 18 N -0.310 5.310 19 C -0.380 4.380 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.201 1.201 25 H -0.215 1.215 26 H -0.217 1.217 27 C 0.014 3.986 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.230 0.770 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.725 0.112 20.290 21.082 hybrid contribution -0.082 -0.131 -1.175 1.185 sum -5.807 -0.019 19.115 19.977 Atomic orbital electron populations 1.21746 0.94617 1.02337 1.02092 1.21563 0.96577 0.94535 1.03521 1.20350 0.82926 0.99678 1.05032 1.24625 0.95654 0.99337 0.85185 1.84512 1.11149 1.68015 1.32977 1.73608 0.95855 1.20438 1.16669 1.24785 0.96218 1.00623 0.88919 1.20265 0.89548 1.03988 0.99971 1.22070 0.92908 1.14532 0.95433 1.16852 0.77287 0.84467 0.83636 1.90867 1.49904 1.31180 1.67410 1.46136 1.70011 1.07596 1.12266 1.21840 0.99337 0.99092 0.77716 0.89385 1.21678 0.98987 0.96394 0.98201 1.22182 1.00962 1.00574 0.94204 1.20850 0.88142 0.88524 0.98359 1.44003 1.60698 1.24381 1.01909 1.19268 1.41216 0.89068 0.88477 0.91480 1.25017 1.00086 0.96079 0.98370 1.70047 1.52496 1.15582 1.16672 0.86228 0.77247 0.81554 0.81839 1.20134 1.21509 1.21724 1.21172 0.92395 0.99376 0.85608 0.92473 0.92270 0.92132 0.90694 0.91290 0.88792 0.88339 0.89485 0.89991 0.89357 0.77008 0.93039 0.92180 0.92652 0.92375 0.96292 0.89201 0.93698 0.96436 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.68 16 2 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 3 C -0.04 -0.34 5.66 -27.88 -0.16 -0.50 16 4 C 0.02 0.17 6.80 -34.62 -0.24 -0.06 16 5 O 0.09 1.14 11.06 18.66 0.21 1.34 16 6 N -0.36 -4.74 12.01 34.78 0.42 -4.32 16 7 C 0.06 0.73 7.59 -79.77 -0.61 0.13 16 8 C -0.08 -0.87 10.49 36.01 0.38 -0.49 16 9 C -0.24 -3.19 6.24 -102.90 -0.64 -3.83 16 10 C 0.59 9.13 7.57 -12.53 -0.09 9.03 16 11 O -0.52 -10.16 16.77 5.27 0.09 -10.07 16 12 N -0.71 -9.87 5.08 -54.77 -0.28 -10.15 16 13 C 0.13 2.14 2.60 -67.81 -0.18 1.96 16 14 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 15 C -0.11 -1.74 5.36 -26.69 -0.14 -1.89 16 16 C -0.14 -2.50 6.08 -26.61 -0.16 -2.66 16 17 C 0.17 3.85 5.31 -3.71 -0.02 3.83 16 18 N -0.59 -14.62 2.99 -172.32 -0.52 -15.14 16 19 C -0.25 -6.96 9.59 -15.06 -0.14 -7.10 16 20 H 0.07 1.88 7.89 -52.49 -0.41 1.47 16 21 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 22 N -0.90 -25.96 11.19 55.49 0.62 -25.34 16 23 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.14 3.01 6.09 -3.71 -0.02 2.99 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.79 8.11 -51.93 -0.42 0.37 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.40 4.40 8.59 -40.82 -0.35 4.05 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 1.32 7.94 -51.93 -0.41 0.91 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -32.14 386.71 -8.35 -40.49 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.78 Total: 1.04 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.90 Total: -0.49 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.24 Total: -54.95 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.29 Total: -8.73 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.14 -8.35 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007330373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.037 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds