Wall clock time and date at job start Tue Mar 31 2020 13:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50688 * 109.47433 * 2 1 4 4 N 1.30616 * 125.42707 * 89.97678 * 3 2 1 5 5 C 1.33689 * 108.99968 * 179.75217 * 4 3 2 6 6 C 1.50698 * 126.27900 * 180.27117 * 5 4 3 7 7 C 1.36341 * 107.45320 * 0.42966 * 5 4 3 8 8 C 1.46723 * 126.64734 * 179.84033 * 7 5 4 9 9 O 1.21686 * 119.99920 * 359.71409 * 8 7 5 10 10 N 1.34773 * 120.00140 * 179.70894 * 8 7 5 11 11 C 1.46499 * 120.00221 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47439 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.49299 * 305.06745 * 12 11 10 14 14 C 1.53038 * 109.50103 * 185.00208 * 12 11 10 15 15 C 1.53036 * 109.54003 * 178.64998 * 14 12 11 16 16 C 1.53192 * 109.31293 * 61.36202 * 15 14 12 17 17 N 1.46924 * 108.77591 * 305.36430 * 16 15 14 18 18 C 1.36939 * 120.62993 * 233.58522 * 17 16 15 19 19 H 1.08002 * 119.99754 * 151.83452 * 18 17 16 20 20 C 1.38804 * 119.99958 * 331.83412 * 18 17 16 21 21 N 1.31622 * 120.00247 * 343.08098 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 163.08052 * 20 18 17 23 23 H 1.48493 * 109.47005 * 90.00021 * 22 20 18 24 24 H 1.48501 * 109.47040 * 209.99959 * 22 20 18 25 25 H 1.48500 * 109.46752 * 329.99813 * 22 20 18 26 26 C 1.46920 * 118.73855 * 53.86375 * 17 16 15 27 27 O 1.33669 * 125.42143 * 270.00248 * 3 2 1 28 28 H 1.09004 * 109.46726 * 300.00460 * 1 2 3 29 29 H 1.09002 * 109.47022 * 59.99904 * 1 2 3 30 30 H 1.08996 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46726 * 239.99540 * 2 1 3 32 32 H 1.09002 * 109.47022 * 120.00096 * 2 1 3 33 33 H 1.09002 * 109.47521 * 270.19262 * 6 5 4 34 34 H 1.09007 * 109.47175 * 30.18850 * 6 5 4 35 35 H 1.08995 * 109.47640 * 150.18329 * 6 5 4 36 36 H 0.97009 * 120.00362 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.46920 * 60.00078 * 11 10 8 38 38 H 1.08998 * 109.46821 * 300.00300 * 11 10 8 39 39 H 1.08998 * 109.46122 * 58.62595 * 14 12 11 40 40 H 1.09004 * 109.44451 * 298.66287 * 14 12 11 41 41 H 1.08996 * 109.49733 * 301.41024 * 15 14 12 42 42 H 1.09005 * 109.52294 * 181.33131 * 15 14 12 43 43 H 1.09001 * 109.58625 * 185.57745 * 16 15 14 44 44 H 1.08997 * 109.70196 * 65.22177 * 16 15 14 45 45 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58855 * 65.92358 * 26 17 16 47 47 H 1.08998 * 109.58990 * 186.35233 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2844 2.1346 1.0643 5 6 2.7172 3.3417 0.6863 6 6 3.1238 4.4695 1.5994 7 6 2.7200 3.3667 -0.6769 8 6 3.1174 4.4912 -1.5314 9 8 3.4869 5.5361 -1.0291 10 7 3.0733 4.3668 -2.8727 11 6 3.4707 5.4895 -3.7259 12 6 3.3280 5.0886 -5.1956 13 1 3.8975 4.1779 -5.3812 14 6 3.8597 6.2140 -6.0860 15 6 3.7485 5.8002 -7.5552 16 6 2.2760 5.5621 -7.9044 17 7 1.7175 4.5862 -6.9587 18 6 1.0844 3.4594 -7.4113 19 1 1.0807 2.5632 -6.8087 20 6 0.4476 3.4693 -8.6446 21 7 0.1580 4.6137 -9.2267 22 14 0.0015 1.8581 -9.4783 23 1 -1.3606 1.4433 -9.0568 24 1 0.0301 2.0389 -10.9520 25 1 0.9805 0.8117 -9.0888 26 6 1.8458 4.8452 -5.5182 27 8 2.2906 2.1511 -1.0893 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2539 5.0868 1.8240 34 1 3.5273 4.0598 2.5254 35 1 3.8842 5.0776 1.1095 36 1 2.7784 3.5339 -3.2732 37 1 4.5080 5.7529 -3.5199 38 1 2.8301 6.3470 -3.5197 39 1 4.9041 6.4079 -5.8414 40 1 3.2736 7.1175 -5.9178 41 1 4.3140 4.8828 -7.7186 42 1 4.1491 6.5921 -8.1880 43 1 2.1996 5.1723 -8.9194 44 1 1.7246 6.4994 -7.8304 45 1 -0.2874 4.6205 -10.0884 46 1 1.2616 5.7260 -5.2518 47 1 1.4855 3.9822 -4.9582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023687574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:52 Heat of formation + Delta-G solvation = -14.460075 kcal Electronic energy + Delta-G solvation = -27342.441556 eV Core-core repulsion = 23526.731499 eV Total energy + Delta-G solvation = -3815.710056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.62697 -39.65971 -37.83097 -35.67823 -34.84394 -34.48376 -33.05098 -31.09726 -30.49955 -30.40340 -28.02886 -25.79541 -25.31893 -24.67148 -22.29969 -21.90817 -21.68960 -20.95528 -20.57477 -19.21359 -18.13922 -17.17718 -16.72419 -16.08709 -16.03780 -15.28792 -14.97300 -14.87282 -14.47239 -14.22453 -14.03044 -13.70691 -13.47546 -13.42862 -13.27372 -12.96742 -12.83464 -12.47116 -12.37770 -12.29444 -12.21894 -12.05949 -11.58642 -11.34013 -11.17074 -11.05728 -11.03204 -10.74492 -10.54966 -10.31778 -10.25048 -10.18841 -9.95468 -9.63303 -9.46834 -9.23548 -8.85242 -8.50252 -6.70919 -5.82981 -3.26328 0.65218 2.18519 2.21483 2.99570 3.11216 3.33546 3.40920 3.42666 3.62728 4.44182 4.48649 4.51470 4.73643 4.75428 4.92479 5.04359 5.23955 5.29564 5.32232 5.38228 5.41109 5.41843 5.49010 5.53887 5.57470 5.70723 5.72601 5.77125 5.82722 5.87105 5.93871 6.12167 6.17988 6.25166 6.31543 6.37259 6.55074 6.65549 6.72436 6.81460 6.91083 7.26099 7.36223 7.49047 7.63869 7.74711 7.98373 8.40665 9.16830 9.80096 10.37058 11.25231 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011813 B = 0.003409 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.618947 B = 8211.227754 C =10272.486633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.031 4.031 3 C 0.223 3.777 4 N -0.489 5.489 5 C 0.079 3.921 6 C -0.080 4.080 7 C -0.117 4.117 8 C 0.607 3.393 9 O -0.520 6.520 10 N -0.709 5.709 11 C 0.126 3.874 12 C -0.119 4.119 13 H 0.074 0.926 14 C -0.099 4.099 15 C -0.141 4.141 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.153 3.847 27 O -0.185 6.185 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.408 0.592 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.018 0.982 45 H 0.254 0.746 46 H 0.020 0.980 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -4.734 17.006 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.069 4.069 3 C 0.017 3.983 4 N -0.219 5.219 5 C -0.046 4.046 6 C -0.137 4.137 7 C -0.172 4.172 8 C 0.392 3.608 9 O -0.399 6.399 10 N -0.359 5.359 11 C 0.003 3.997 12 C -0.139 4.139 13 H 0.092 0.908 14 C -0.137 4.137 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.313 5.313 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.026 3.974 27 O -0.071 6.071 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.244 0.756 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.869 -4.194 17.688 19.102 hybrid contribution -0.403 -1.001 -1.430 1.791 sum 5.467 -5.195 16.258 17.922 Atomic orbital electron populations 1.21801 0.92565 1.03344 1.03304 1.20206 0.97273 0.83768 1.05627 1.26591 0.96470 0.96624 0.78607 1.70332 1.17933 1.03727 1.29935 1.22056 0.97261 0.93971 0.91270 1.20378 1.02833 0.93101 0.97340 1.22963 1.12696 0.86341 0.95220 1.16298 0.78245 0.84469 0.81772 1.90842 1.48398 1.26662 1.73979 1.46005 1.66362 1.18438 1.05132 1.21587 1.00196 0.88306 0.89619 1.22055 1.01087 0.99615 0.91185 0.90755 1.21335 0.99157 0.97253 0.95961 1.22166 1.01438 0.99875 0.94584 1.20798 0.87299 0.91851 0.95745 1.44043 1.64629 1.23784 0.98878 1.19143 1.27589 0.89038 1.02736 0.91809 1.25048 0.97920 0.96568 0.99956 1.70035 1.43292 1.23752 1.17441 0.86324 0.78320 0.83448 0.78836 1.21374 1.21516 1.20472 1.20990 0.91020 0.98075 0.87288 1.84475 1.63380 1.22001 1.37261 0.91701 0.91697 0.90558 0.88315 0.87316 0.90015 0.90578 0.88627 0.75644 0.91443 0.91047 0.93360 0.92390 0.92735 0.93112 0.89565 0.96403 0.93592 0.96247 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.03 -0.22 6.56 -27.89 -0.18 -0.40 16 3 C 0.22 2.56 7.57 -12.80 -0.10 2.46 16 4 N -0.49 -6.35 11.26 -7.08 -0.08 -6.43 16 5 C 0.08 1.05 7.16 -82.47 -0.59 0.46 16 6 C -0.08 -0.88 9.87 36.00 0.36 -0.52 16 7 C -0.12 -1.65 7.18 -36.84 -0.26 -1.91 16 8 C 0.61 8.99 7.79 -12.83 -0.10 8.89 16 9 O -0.52 -8.54 14.80 5.20 0.08 -8.46 16 10 N -0.71 -9.92 5.33 -61.61 -0.33 -10.24 16 11 C 0.13 1.79 5.07 -4.04 -0.02 1.77 16 12 C -0.12 -1.91 2.38 -90.27 -0.22 -2.13 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.10 -1.58 5.16 -26.69 -0.14 -1.72 16 15 C -0.14 -2.60 6.08 -26.61 -0.16 -2.77 16 16 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 17 N -0.59 -14.37 2.99 -172.06 -0.51 -14.89 16 18 C -0.26 -6.84 9.58 -15.06 -0.14 -6.98 16 19 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 20 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 21 N -0.90 -25.79 11.20 55.49 0.62 -25.17 16 22 Si 0.90 21.23 29.59 -169.99 -5.03 16.21 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.15 3.06 5.63 -3.49 -0.02 3.04 16 27 O -0.18 -2.42 10.57 4.39 0.05 -2.37 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.10 1.11 6.47 -51.93 -0.34 0.78 16 36 H 0.41 5.47 7.52 -40.82 -0.31 5.17 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.97 7.16 -51.93 -0.37 0.59 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -31.34 380.87 -8.43 -39.76 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.64 Total: 2.39 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.32 Total: 3.47 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.30 Total: -56.73 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.12 Total: -10.83 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.34 -8.43 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023687574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.301 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds