Wall clock time and date at job start Tue Mar 31 2020 13:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50688 * 109.47433 * 2 1 4 4 N 1.30616 * 125.42707 * 89.97678 * 3 2 1 5 5 C 1.33689 * 108.99968 * 179.75217 * 4 3 2 6 6 C 1.50698 * 126.27900 * 180.27117 * 5 4 3 7 7 C 1.36341 * 107.45320 * 0.42966 * 5 4 3 8 8 C 1.46723 * 126.64734 * 179.84033 * 7 5 4 9 9 O 1.21686 * 119.99920 * 359.71409 * 8 7 5 10 10 N 1.34773 * 120.00140 * 179.70894 * 8 7 5 11 11 C 1.46499 * 120.00221 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47439 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.49299 * 305.06745 * 12 11 10 14 14 C 1.53038 * 109.50103 * 185.00208 * 12 11 10 15 15 C 1.53036 * 109.54003 * 178.64998 * 14 12 11 16 16 C 1.53192 * 109.31293 * 61.36202 * 15 14 12 17 17 N 1.46924 * 108.77591 * 305.36430 * 16 15 14 18 18 C 1.36939 * 120.62993 * 233.58522 * 17 16 15 19 19 H 1.08002 * 119.99754 * 151.83452 * 18 17 16 20 20 C 1.38804 * 119.99958 * 331.83412 * 18 17 16 21 21 N 1.31622 * 120.00247 * 343.08098 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 163.08052 * 20 18 17 23 23 H 1.48493 * 109.47005 * 90.00021 * 22 20 18 24 24 H 1.48501 * 109.47040 * 209.99959 * 22 20 18 25 25 H 1.48500 * 109.46752 * 329.99813 * 22 20 18 26 26 C 1.46920 * 118.73855 * 53.86375 * 17 16 15 27 27 O 1.33669 * 125.42143 * 270.00248 * 3 2 1 28 28 H 1.09004 * 109.46726 * 300.00460 * 1 2 3 29 29 H 1.09002 * 109.47022 * 59.99904 * 1 2 3 30 30 H 1.08996 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46726 * 239.99540 * 2 1 3 32 32 H 1.09002 * 109.47022 * 120.00096 * 2 1 3 33 33 H 1.09002 * 109.47521 * 270.19262 * 6 5 4 34 34 H 1.09007 * 109.47175 * 30.18850 * 6 5 4 35 35 H 1.08995 * 109.47640 * 150.18329 * 6 5 4 36 36 H 0.97009 * 120.00362 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.46920 * 60.00078 * 11 10 8 38 38 H 1.08998 * 109.46821 * 300.00300 * 11 10 8 39 39 H 1.08998 * 109.46122 * 58.62595 * 14 12 11 40 40 H 1.09004 * 109.44451 * 298.66287 * 14 12 11 41 41 H 1.08996 * 109.49733 * 301.41024 * 15 14 12 42 42 H 1.09005 * 109.52294 * 181.33131 * 15 14 12 43 43 H 1.09001 * 109.58625 * 185.57745 * 16 15 14 44 44 H 1.08997 * 109.70196 * 65.22177 * 16 15 14 45 45 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58855 * 65.92358 * 26 17 16 47 47 H 1.08998 * 109.58990 * 186.35233 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2844 2.1346 1.0643 5 6 2.7172 3.3417 0.6863 6 6 3.1238 4.4695 1.5994 7 6 2.7200 3.3667 -0.6769 8 6 3.1174 4.4912 -1.5314 9 8 3.4869 5.5361 -1.0291 10 7 3.0733 4.3668 -2.8727 11 6 3.4707 5.4895 -3.7259 12 6 3.3280 5.0886 -5.1956 13 1 3.8975 4.1779 -5.3812 14 6 3.8597 6.2140 -6.0860 15 6 3.7485 5.8002 -7.5552 16 6 2.2760 5.5621 -7.9044 17 7 1.7175 4.5862 -6.9587 18 6 1.0844 3.4594 -7.4113 19 1 1.0807 2.5632 -6.8087 20 6 0.4476 3.4693 -8.6446 21 7 0.1580 4.6137 -9.2267 22 14 0.0015 1.8581 -9.4783 23 1 -1.3606 1.4433 -9.0568 24 1 0.0301 2.0389 -10.9520 25 1 0.9805 0.8117 -9.0888 26 6 1.8458 4.8452 -5.5182 27 8 2.2906 2.1511 -1.0893 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2539 5.0868 1.8240 34 1 3.5273 4.0598 2.5254 35 1 3.8842 5.0776 1.1095 36 1 2.7784 3.5339 -3.2732 37 1 4.5080 5.7529 -3.5199 38 1 2.8301 6.3470 -3.5197 39 1 4.9041 6.4079 -5.8414 40 1 3.2736 7.1175 -5.9178 41 1 4.3140 4.8828 -7.7186 42 1 4.1491 6.5921 -8.1880 43 1 2.1996 5.1723 -8.9194 44 1 1.7246 6.4994 -7.8304 45 1 -0.2874 4.6205 -10.0884 46 1 1.2616 5.7260 -5.2518 47 1 1.4855 3.9822 -4.9582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023687574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:51 Heat of formation + Delta-G solvation = -35.773407 kcal Electronic energy + Delta-G solvation = -27343.365771 eV Core-core repulsion = 23526.731499 eV Total energy + Delta-G solvation = -3816.634272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.58536 -40.83850 -39.35018 -36.74977 -36.14681 -35.19475 -34.70338 -32.33789 -32.19689 -31.65619 -29.06340 -27.28328 -26.86253 -25.60452 -23.86414 -23.16122 -22.57058 -22.30578 -21.64791 -20.72258 -19.27889 -18.61076 -18.15164 -17.20963 -17.00939 -16.80614 -16.47451 -15.79662 -15.73080 -15.48432 -15.31473 -15.02500 -14.85599 -14.53489 -14.32182 -14.19758 -14.00042 -13.77746 -13.70689 -13.54191 -13.27430 -13.02568 -12.88884 -12.64958 -12.51542 -12.29332 -12.20074 -12.09800 -11.99356 -11.96503 -11.84588 -11.60043 -11.46636 -11.17387 -11.09161 -10.54436 -10.36361 -9.86520 -8.68261 -7.87854 -5.34183 -0.34989 1.23131 1.27011 1.45981 1.47804 1.57209 1.89617 2.04950 2.50357 2.78694 3.27086 3.53008 3.58048 3.61787 3.95719 3.98100 4.03755 4.11964 4.17236 4.19373 4.39767 4.40594 4.53628 4.56309 4.59655 4.65803 4.73301 4.76974 4.84794 4.87401 4.91823 4.94198 4.98852 5.00366 5.10028 5.13971 5.23661 5.29167 5.31856 5.34223 5.42127 5.55971 5.65930 5.78386 6.18775 6.38335 6.48246 6.86067 7.14229 7.85298 8.37227 9.18153 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011813 B = 0.003409 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.618947 B = 8211.227754 C =10272.486633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.031 4.031 3 C 0.231 3.769 4 N -0.508 5.508 5 C 0.076 3.924 6 C -0.077 4.077 7 C -0.143 4.143 8 C 0.609 3.391 9 O -0.541 6.541 10 N -0.707 5.707 11 C 0.136 3.864 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.096 4.096 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.068 0.932 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.152 3.848 27 O -0.193 6.193 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.410 0.590 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.051 0.949 44 H -0.007 1.007 45 H 0.249 0.751 46 H 0.008 0.992 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 -6.135 18.355 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.069 4.069 3 C 0.025 3.975 4 N -0.238 5.238 5 C -0.048 4.048 6 C -0.134 4.134 7 C -0.198 4.198 8 C 0.395 3.605 9 O -0.421 6.421 10 N -0.357 5.357 11 C 0.013 3.987 12 C -0.122 4.122 13 H 0.094 0.906 14 C -0.134 4.134 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.395 4.395 19 H 0.086 0.914 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.193 1.193 26 C 0.026 3.974 27 O -0.080 6.080 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.011 0.989 45 H 0.058 0.942 46 H 0.026 0.974 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.025 -5.601 19.066 21.077 hybrid contribution -0.817 -0.607 -1.777 2.048 sum 6.208 -6.208 17.289 19.391 Atomic orbital electron populations 1.21795 0.92126 1.04617 1.02172 1.20544 0.97430 0.81381 1.07530 1.27604 0.94337 0.97602 0.77907 1.70384 1.19054 1.03833 1.30532 1.22474 0.96271 0.94577 0.91464 1.20423 1.02916 0.92532 0.97533 1.22828 1.14735 0.86823 0.95399 1.16347 0.77834 0.84467 0.81843 1.90822 1.49449 1.27479 1.74328 1.45961 1.66252 1.18467 1.05006 1.21455 1.01077 0.88079 0.88093 1.21812 0.97794 0.99985 0.92585 0.90597 1.21332 1.01335 0.96856 0.93855 1.21995 0.97378 1.00633 0.96892 1.20643 0.90361 0.90204 0.94112 1.44313 1.64792 1.23415 1.00728 1.19511 1.26953 0.90072 1.02919 0.91447 1.25808 0.98508 0.99485 1.00756 1.70195 1.44631 1.25756 1.17540 0.85310 0.78100 0.79980 0.77265 1.21173 1.21999 1.19280 1.21107 0.93787 0.97561 0.84962 1.84471 1.63722 1.21895 1.37927 0.92518 0.93119 0.88087 0.86475 0.85287 0.89307 0.88925 0.89351 0.75352 0.89767 0.91493 0.89812 0.92382 0.92874 0.91094 0.93063 0.98870 0.94153 0.97437 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.89 71.98 0.71 -1.01 16 2 C -0.03 -0.37 6.56 29.84 0.20 -0.18 16 3 C 0.23 4.99 7.57 88.29 0.67 5.66 16 4 N -0.51 -12.60 11.26 -291.07 -3.28 -15.87 16 5 C 0.08 1.99 7.16 41.83 0.30 2.29 16 6 C -0.08 -1.63 9.87 71.24 0.70 -0.92 16 7 C -0.14 -3.94 7.18 24.05 0.17 -3.77 16 8 C 0.61 17.61 7.79 86.46 0.67 18.28 16 9 O -0.54 -17.36 14.80 -4.30 -0.06 -17.42 16 10 N -0.71 -18.98 5.33 -467.05 -2.49 -21.47 16 11 C 0.14 3.61 5.07 86.38 0.44 4.05 16 12 C -0.10 -3.09 2.38 -10.57 -0.03 -3.12 16 13 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 14 C -0.10 -2.83 5.16 30.62 0.16 -2.67 16 15 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 16 C 0.17 8.20 5.30 86.36 0.46 8.66 16 17 N -0.61 -29.98 2.99 -698.28 -2.09 -32.07 16 18 C -0.26 -14.29 9.58 84.03 0.81 -13.49 16 19 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 20 C -0.05 -2.77 4.92 84.86 0.42 -2.36 16 21 N -0.94 -55.17 11.20 21.65 0.24 -54.92 16 22 Si 0.97 44.13 29.59 68.60 2.03 46.16 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C 0.15 6.02 5.63 86.51 0.49 6.51 16 27 O -0.19 -4.89 10.57 -7.22 -0.08 -4.97 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.09 2.01 6.47 -2.39 -0.02 1.99 16 36 H 0.41 10.63 7.52 -92.70 -0.70 9.93 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.05 2.78 6.06 -2.39 -0.01 2.76 16 44 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.05 1.96 7.16 -2.39 -0.02 1.95 16 Total: -1.00 -68.87 380.87 0.90 -67.97 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.27 Total: 19.10 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 6.35 Total: 13.49 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -7.61 Total: -124.34 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.14 Total: -22.39 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.87 0.90 -67.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023687574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.195 kcal (2) G-P(sol) polarization free energy of solvation -68.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds