Wall clock time and date at job start Tue Mar 31 2020 13:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46935 * 2 1 4 4 C 1.50697 * 109.46865 * 120.00186 * 2 1 3 5 5 C 1.35319 * 126.66626 * 120.00039 * 4 2 1 6 6 C 1.42270 * 103.92560 * 179.97438 * 5 4 2 7 7 C 1.48328 * 126.94206 * 179.97438 * 6 5 4 8 8 O 1.21496 * 119.99572 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00343 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00042 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46842 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.70048 * 60.13161 * 11 10 9 13 13 C 1.53619 * 109.66459 * 180.71915 * 11 10 9 14 14 C 1.53042 * 109.24573 * 174.55022 * 13 11 10 15 15 C 1.53042 * 109.53443 * 298.51512 * 14 13 11 16 16 C 1.53192 * 109.31430 * 61.36302 * 15 14 13 17 17 N 1.46921 * 109.58862 * 299.77196 * 11 10 9 18 18 C 1.36942 * 120.63278 * 6.63219 * 17 11 10 19 19 H 1.08000 * 119.99344 * 328.55647 * 18 17 11 20 20 C 1.38810 * 120.00539 * 148.82965 * 18 17 11 21 21 N 1.31614 * 120.00279 * 162.69583 * 20 18 17 22 22 Si 1.86800 * 119.99608 * 342.70531 * 20 18 17 23 23 H 1.48503 * 109.47328 * 88.88345 * 22 20 18 24 24 H 1.48507 * 109.46926 * 208.87995 * 22 20 18 25 25 H 1.48498 * 109.47396 * 328.88103 * 22 20 18 26 26 N 1.30987 * 106.12128 * 0.26462 * 6 5 4 27 27 O 1.20907 * 111.43869 * 359.53128 * 26 6 5 28 28 H 1.09003 * 109.46902 * 299.99721 * 1 2 3 29 29 H 1.08999 * 109.47344 * 59.99651 * 1 2 3 30 30 H 1.09004 * 109.47180 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46902 * 240.00279 * 2 1 3 32 32 H 1.08992 * 109.47593 * 299.99964 * 3 2 1 33 33 H 1.09003 * 109.47098 * 60.00399 * 3 2 1 34 34 H 1.09000 * 109.47080 * 179.97438 * 3 2 1 35 35 H 1.08004 * 128.03756 * 359.96309 * 5 4 2 36 36 H 0.97004 * 119.99439 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.46800 * 60.00092 * 10 9 7 38 38 H 1.08994 * 109.46946 * 300.00437 * 10 9 7 39 39 H 1.09007 * 109.63588 * 54.55945 * 13 11 10 40 40 H 1.09006 * 109.46196 * 294.44043 * 13 11 10 41 41 H 1.09002 * 109.46187 * 178.49304 * 14 13 11 42 42 H 1.08997 * 109.44763 * 58.52332 * 14 13 11 43 43 H 1.08999 * 109.49766 * 301.40949 * 15 14 13 44 44 H 1.09007 * 109.51778 * 181.33135 * 15 14 13 45 45 H 1.09000 * 109.58298 * 185.57582 * 16 15 14 46 46 H 1.09001 * 109.69780 * 65.22231 * 16 15 14 47 47 H 0.97001 * 120.00077 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8133 -1.8150 1.2635 6 6 2.9919 -2.0666 2.6524 7 6 3.7714 -3.1695 3.2656 8 8 4.3415 -3.9765 2.5585 9 7 3.8472 -3.2766 4.6070 10 6 4.6175 -4.3657 5.2125 11 6 4.5409 -4.2583 6.7368 12 1 3.5020 -4.3309 7.0585 13 6 5.3622 -5.3879 7.3765 14 6 5.3916 -5.1930 8.8942 15 6 6.0661 -3.8600 9.2260 16 6 5.2579 -2.7152 8.6071 17 7 5.1014 -2.9707 7.1687 18 6 5.4657 -2.0244 6.2484 19 1 5.8303 -2.3272 5.2779 20 6 5.3716 -0.6761 6.5647 21 7 6.0210 0.2153 5.8464 22 14 4.3234 -0.1268 8.0100 23 1 5.1454 -0.1292 9.2468 24 1 3.8123 1.2446 7.7579 25 1 3.1792 -1.0591 8.1743 26 7 2.3237 -1.1312 3.2803 27 8 1.7928 -0.3708 2.5045 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 3.2090 -2.3755 0.4294 36 1 3.3916 -2.6325 5.1714 37 1 5.6578 -4.2951 4.8947 38 1 4.2047 -5.3230 4.8948 39 1 6.3801 -5.3664 6.9872 40 1 4.9033 -6.3484 7.1418 41 1 5.9510 -6.0076 9.3542 42 1 4.3720 -5.1898 9.2795 43 1 7.0774 -3.8528 8.8193 44 1 6.1081 -3.7324 10.3078 45 1 5.7859 -1.7733 8.7556 46 1 4.2763 -2.6621 9.0778 47 1 5.9556 1.1575 6.0677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024578783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:52 Heat of formation + Delta-G solvation = 38.432824 kcal Electronic energy + Delta-G solvation = -28244.980915 eV Core-core repulsion = 24431.564467 eV Total energy + Delta-G solvation = -3813.416448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.79421 -39.23460 -37.92091 -36.16104 -34.33559 -33.62286 -33.03855 -31.07683 -30.70717 -30.34228 -27.36576 -26.52580 -25.11210 -23.77813 -22.98038 -22.67909 -21.81011 -20.68527 -19.66851 -19.01883 -17.47355 -17.23376 -16.71363 -16.18139 -15.71140 -15.40965 -15.03432 -14.93701 -14.32838 -13.98804 -13.72925 -13.69675 -13.47731 -13.40596 -13.28597 -13.22332 -12.50134 -12.39252 -12.14805 -12.04900 -11.70938 -11.63089 -11.49213 -11.45476 -11.33056 -10.93701 -10.82578 -10.65052 -10.45636 -10.21009 -10.10675 -9.95665 -9.79556 -9.51401 -9.43781 -9.26224 -8.69500 -8.31740 -6.94008 -5.96618 -3.38350 1.49780 1.94468 3.13421 3.29204 3.45920 3.47720 3.50338 3.76405 4.32275 4.49413 4.53003 4.73960 4.81231 4.86348 5.14560 5.23373 5.24147 5.32281 5.40895 5.42627 5.48473 5.50401 5.57727 5.62652 5.72521 5.74361 5.79165 5.86924 5.93561 6.01804 6.06109 6.09741 6.11073 6.18087 6.20135 6.38015 6.40149 6.46628 6.56259 6.69541 6.73764 6.95914 7.04758 7.93936 8.06337 8.33157 8.40005 8.70779 8.90121 9.68232 10.05928 11.18082 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016114 B = 0.004016 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.211939 B = 6970.508239 C = 8086.989866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.009 4.009 3 C -0.152 4.152 4 C -0.040 4.040 5 C -0.182 4.182 6 C -0.015 4.015 7 C 0.594 3.406 8 O -0.548 6.548 9 N -0.675 5.675 10 C 0.134 3.866 11 C 0.162 3.838 12 H 0.037 0.963 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.135 4.135 16 C 0.125 3.875 17 N -0.605 5.605 18 C -0.267 4.267 19 H 0.091 0.909 20 C 0.033 3.967 21 N -0.902 5.902 22 Si 0.882 3.118 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.272 1.272 26 N -0.319 5.319 27 O 0.124 5.876 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.176 0.824 36 H 0.417 0.583 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.023 0.977 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 -3.604 -7.005 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 C -0.210 4.210 4 C -0.103 4.103 5 C -0.204 4.204 6 C -0.175 4.175 7 C 0.377 3.623 8 O -0.426 6.426 9 N -0.325 5.325 10 C 0.011 3.989 11 C 0.056 3.944 12 H 0.055 0.945 13 C -0.167 4.167 14 C -0.146 4.146 15 C -0.175 4.175 16 C 0.000 4.000 17 N -0.330 5.330 18 C -0.395 4.395 19 H 0.109 0.891 20 C -0.168 4.168 21 N -0.544 5.544 22 Si 0.713 3.287 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.197 1.197 26 N -0.018 5.018 27 O 0.047 5.953 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.194 0.806 36 H 0.256 0.744 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.041 0.959 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.146 -3.780 -6.190 11.672 hybrid contribution -0.289 0.521 0.527 0.795 sum -9.435 -3.259 -5.663 11.476 Atomic orbital electron populations 1.21895 0.93323 1.02632 1.02899 1.19746 0.96523 0.96143 0.90389 1.21901 1.02008 0.94171 1.02870 1.24396 1.01183 0.97255 0.87457 1.22365 1.02580 0.98818 0.96634 1.23528 1.02810 0.98635 0.92524 1.16808 0.80169 0.82598 0.82730 1.90721 1.47256 1.42528 1.62130 1.45841 1.50594 1.30727 1.05320 1.21351 0.96862 0.88235 0.92482 1.20841 0.95186 0.87114 0.91275 0.94509 1.22004 1.01221 0.97686 0.95813 1.21367 1.00125 0.97178 0.95913 1.22002 1.00446 0.96022 0.98980 1.21380 0.96671 0.97212 0.84752 1.44411 1.73057 1.14315 1.01221 1.18935 1.37886 0.85092 0.97572 0.89147 1.25318 0.98400 0.95815 0.97225 1.69797 1.41995 1.01549 1.41038 0.86998 0.81951 0.77147 0.82592 1.21593 1.23233 1.19667 1.74271 1.09257 1.02014 1.16271 1.84775 1.54594 1.42543 1.13370 0.91697 0.91447 0.92123 0.87971 0.91452 0.91632 0.91828 0.80623 0.74447 0.90795 0.91994 0.91521 0.92524 0.93013 0.92757 0.91778 0.93053 0.90923 0.95872 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.18 37.16 0.34 -0.82 16 2 C -0.01 -0.08 3.34 -91.77 -0.31 -0.39 16 3 C -0.15 -1.35 9.18 37.15 0.34 -1.01 16 4 C -0.04 -0.54 5.98 -35.35 -0.21 -0.75 16 5 C -0.18 -2.83 10.91 -39.07 -0.43 -3.26 16 6 C -0.02 -0.30 7.19 -82.53 -0.59 -0.89 16 7 C 0.59 12.59 7.85 -12.11 -0.10 12.50 16 8 O -0.55 -12.38 16.95 5.37 0.09 -12.29 16 9 N -0.67 -14.10 3.85 -61.10 -0.23 -14.34 16 10 C 0.13 2.58 4.44 -4.04 -0.02 2.56 16 11 C 0.16 3.05 3.03 -67.38 -0.20 2.85 16 12 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 13 C -0.13 -2.02 5.40 -26.39 -0.14 -2.16 16 14 C -0.11 -1.63 5.88 -26.69 -0.16 -1.79 16 15 C -0.14 -2.34 6.08 -26.61 -0.16 -2.50 16 16 C 0.13 2.65 4.19 -3.71 -0.02 2.63 16 17 N -0.60 -13.61 2.71 -164.53 -0.45 -14.06 16 18 C -0.27 -7.05 7.42 -15.06 -0.11 -7.16 16 19 H 0.09 2.63 6.07 -52.49 -0.32 2.31 16 20 C 0.03 0.91 5.27 -17.43 -0.09 0.82 16 21 N -0.90 -27.26 13.97 55.49 0.78 -26.48 16 22 Si 0.88 22.18 24.32 -169.99 -4.13 18.05 16 23 H -0.29 -7.03 6.51 56.52 0.37 -6.66 16 24 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 25 H -0.27 -6.67 6.75 56.52 0.38 -6.29 16 26 N -0.32 -6.25 11.84 33.29 0.39 -5.85 16 27 O 0.12 2.05 11.18 17.24 0.19 2.25 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.75 8.12 -51.93 -0.42 0.33 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.18 2.35 8.06 -52.48 -0.42 1.92 16 36 H 0.42 9.24 7.15 -40.82 -0.29 8.94 16 37 H 0.07 1.57 7.42 -51.93 -0.39 1.18 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.70 4.64 -51.93 -0.24 1.46 16 46 H 0.02 0.49 7.05 -51.93 -0.37 0.12 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -32.00 371.31 -7.17 -39.18 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.55 Total: 7.31 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.85 Total: 0.64 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.49 Total: -60.73 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.28 Total: -10.05 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.13 Total: 18.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.00 -7.17 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024578783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.612 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds