Wall clock time and date at job start Tue Mar 31 2020 13:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47104 * 2 1 4 4 C 1.50705 * 109.47248 * 120.00117 * 2 1 3 5 5 O 1.33492 * 126.82595 * 300.02633 * 4 2 1 6 6 N 1.20657 * 113.15381 * 179.97438 * 5 4 2 7 7 C 1.30017 * 112.30339 * 359.71947 * 6 5 4 8 8 C 1.37357 * 126.83183 * 120.00358 * 4 2 1 9 9 C 1.47400 * 128.56220 * 359.97438 * 8 4 2 10 10 O 1.21615 * 120.00187 * 359.97438 * 9 8 4 11 11 N 1.34773 * 120.00115 * 180.02562 * 9 8 4 12 12 C 1.46502 * 120.00359 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47145 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.70550 * 60.13940 * 13 12 11 15 15 C 1.53624 * 109.66580 * 180.73141 * 13 12 11 16 16 C 1.53045 * 109.24473 * 174.54513 * 15 13 12 17 17 C 1.53041 * 109.53981 * 298.51613 * 16 15 13 18 18 C 1.53190 * 109.31413 * 61.36157 * 17 16 15 19 19 N 1.46927 * 109.58724 * 299.78495 * 13 12 11 20 20 C 1.36935 * 120.63068 * 6.62974 * 19 13 12 21 21 H 1.08007 * 119.99679 * 327.76519 * 20 19 13 22 22 C 1.38812 * 120.00227 * 148.03791 * 20 19 13 23 23 N 1.31620 * 119.99771 * 347.95393 * 22 20 19 24 24 Si 1.86800 * 120.00022 * 167.95043 * 22 20 19 25 25 H 1.48500 * 109.46967 * 60.00335 * 24 22 20 26 26 H 1.48504 * 109.47216 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47180 * 300.00227 * 24 22 20 28 28 H 1.08996 * 109.47046 * 299.99580 * 1 2 3 29 29 H 1.08994 * 109.46879 * 60.00060 * 1 2 3 30 30 H 1.09003 * 109.46858 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47551 * 240.00077 * 2 1 3 32 32 H 1.09004 * 109.46540 * 60.00095 * 3 2 1 33 33 H 1.09003 * 109.47122 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47104 * 300.00273 * 3 2 1 35 35 H 1.07997 * 127.33365 * 180.30470 * 7 6 5 36 36 H 0.97001 * 119.99716 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.46817 * 59.99646 * 12 11 9 38 38 H 1.09002 * 109.46652 * 300.00009 * 12 11 9 39 39 H 1.09006 * 109.63127 * 54.55474 * 15 13 12 40 40 H 1.08997 * 109.45871 * 294.43453 * 15 13 12 41 41 H 1.08996 * 109.45673 * 178.48849 * 16 15 13 42 42 H 1.09003 * 109.44182 * 58.52655 * 16 15 13 43 43 H 1.09006 * 109.49388 * 301.41392 * 17 16 15 44 44 H 1.08992 * 109.52230 * 181.33451 * 17 16 15 45 45 H 1.09001 * 109.58822 * 185.57708 * 18 17 16 46 46 H 1.09002 * 109.70465 * 65.21736 * 18 17 16 47 47 H 0.97000 * 119.99370 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 1.7950 -0.3756 2.5007 6 7 2.3199 -1.1186 3.2933 7 6 2.9863 -2.0708 2.7104 8 6 2.8252 -1.8315 1.2680 9 6 3.3733 -2.6074 0.1410 10 8 3.1339 -2.2705 -1.0028 11 7 4.1390 -3.6909 0.3780 12 6 4.6834 -4.4624 -0.7422 13 6 5.5092 -5.6318 -0.2024 14 1 4.8767 -6.2787 0.4056 15 6 6.0974 -6.4334 -1.3735 16 6 7.0300 -7.5162 -0.8257 17 6 8.1838 -6.8603 -0.0637 18 6 7.6224 -6.0627 1.1176 19 7 6.6167 -5.1171 0.6145 20 6 6.7068 -3.7822 0.9061 21 1 6.3510 -3.0493 0.1969 22 6 7.2605 -3.3707 2.1106 23 7 7.4800 -4.2473 3.0675 24 14 7.6941 -1.5728 2.3734 25 1 6.4695 -0.7436 2.2398 26 1 8.2669 -1.3952 3.7320 27 1 8.6913 -1.1504 1.3573 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 3.5415 -2.8667 3.1844 36 1 4.3297 -3.9599 1.2902 37 1 5.3183 -3.8194 -1.3516 38 1 3.8646 -4.8466 -1.3506 39 1 6.6588 -5.7668 -2.0282 40 1 5.2890 -6.9002 -1.9363 41 1 7.4284 -8.1044 -1.6523 42 1 6.4734 -8.1674 -0.1517 43 1 8.7256 -6.1896 -0.7307 44 1 8.8605 -7.6305 0.3061 45 1 8.4287 -5.5140 1.6043 46 1 7.1591 -6.7424 1.8329 47 1 7.8673 -3.9598 3.9091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024742428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:06 Heat of formation + Delta-G solvation = 14.793059 kcal Electronic energy + Delta-G solvation = -28693.930024 eV Core-core repulsion = 24879.488478 eV Total energy + Delta-G solvation = -3814.441545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.00989 -40.72911 -39.27640 -36.99221 -35.68837 -34.89763 -34.76849 -32.43087 -31.83861 -31.58187 -28.09235 -27.90906 -26.84635 -25.32216 -24.28963 -23.76420 -22.40147 -21.77940 -21.23071 -20.68001 -19.01024 -18.79400 -18.14721 -17.41037 -17.24224 -16.89518 -16.12522 -16.09718 -15.70038 -15.50972 -15.31882 -14.85233 -14.76404 -14.59844 -14.43499 -14.17000 -14.05560 -13.59921 -13.43908 -13.07053 -12.92250 -12.85236 -12.83592 -12.56533 -12.41743 -12.34171 -12.25797 -12.07551 -11.85353 -11.78650 -11.51578 -11.46799 -11.19069 -11.08616 -10.90823 -10.57071 -10.51776 -9.84696 -8.54650 -7.84552 -5.31978 0.02170 0.70870 1.36228 1.41840 1.44096 1.74177 2.17347 2.36525 2.45915 3.20977 3.25304 3.31241 3.53556 3.59953 3.88907 4.00666 4.08562 4.12761 4.23849 4.25238 4.30204 4.45421 4.56861 4.59450 4.67113 4.73522 4.76803 4.79778 4.88850 4.89698 4.91641 5.02063 5.10460 5.16089 5.24638 5.29362 5.30138 5.33016 5.39814 5.48811 5.58939 5.65421 5.74669 5.86325 6.43925 6.61576 7.09134 7.18803 7.22195 7.88218 8.41525 9.18933 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.004634 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.678449 B = 6040.933366 C = 7162.762132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.028 4.028 3 C -0.145 4.145 4 C 0.057 3.943 5 O 0.095 5.905 6 N -0.374 5.374 7 C 0.028 3.972 8 C -0.277 4.277 9 C 0.591 3.409 10 O -0.574 6.574 11 N -0.684 5.684 12 C 0.140 3.860 13 C 0.158 3.842 14 H 0.035 0.965 15 C -0.121 4.121 16 C -0.103 4.103 17 C -0.136 4.136 18 C 0.178 3.822 19 N -0.601 5.601 20 C -0.231 4.231 21 H 0.061 0.939 22 C -0.025 4.025 23 N -0.921 5.921 24 Si 0.928 3.072 25 H -0.287 1.287 26 H -0.296 1.296 27 H -0.287 1.287 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.207 0.793 36 H 0.411 0.589 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.001 0.999 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.753 1.855 -7.064 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 C -0.202 4.202 4 C -0.007 4.007 5 O 0.037 5.963 6 N -0.080 5.080 7 C -0.155 4.155 8 C -0.284 4.284 9 C 0.378 3.622 10 O -0.457 6.457 11 N -0.332 5.332 12 C 0.016 3.984 13 C 0.052 3.948 14 H 0.052 0.948 15 C -0.160 4.160 16 C -0.140 4.140 17 C -0.175 4.175 18 C 0.052 3.948 19 N -0.325 5.325 20 C -0.362 4.362 21 H 0.078 0.922 22 C -0.222 4.222 23 N -0.567 5.567 24 Si 0.759 3.241 25 H -0.213 1.213 26 H -0.222 1.222 27 H -0.214 1.214 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.224 0.776 36 H 0.248 0.752 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.020 0.980 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.078 2.437 -6.420 13.034 hybrid contribution 1.359 0.357 0.682 1.562 sum -9.719 2.795 -5.738 11.628 Atomic orbital electron populations 1.21847 0.90751 1.02756 1.04381 1.20356 0.98466 0.96702 0.89180 1.21881 1.00726 0.93125 1.04495 1.25376 0.93926 0.93515 0.87923 1.84495 1.55505 1.43680 1.12650 1.73604 1.13056 1.04874 1.16504 1.26624 0.99159 0.99170 0.90500 1.22191 1.09584 1.02377 0.94256 1.16877 0.78389 0.80340 0.86587 1.90663 1.62493 1.70169 1.22374 1.45844 1.48311 1.27342 1.11730 1.21335 0.96375 0.92438 0.88214 1.21010 0.88649 0.92804 0.92302 0.94766 1.21960 0.99465 0.97579 0.97025 1.21347 0.96219 0.97025 0.99449 1.22052 0.98010 0.98856 0.98558 1.20583 0.91672 0.90256 0.92248 1.44256 1.24588 1.03784 1.59922 1.19127 1.36030 0.83537 0.97518 0.92181 1.25391 1.02885 0.98343 0.95606 1.70069 1.48609 1.33426 1.04636 0.85953 0.78051 0.83776 0.76280 1.21336 1.22250 1.21399 0.91117 0.88754 0.92805 0.86935 0.91054 0.93902 0.88514 0.77637 0.75195 0.93118 0.90171 0.92694 0.89843 0.90803 0.92451 0.93649 0.91906 0.93230 0.98049 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.18 71.98 0.66 -1.79 16 2 C -0.03 -0.66 3.29 -11.54 -0.04 -0.70 16 3 C -0.15 -2.89 9.18 71.98 0.66 -2.23 16 4 C 0.06 1.74 6.06 25.48 0.15 1.89 16 5 O 0.10 2.95 11.06 76.99 0.85 3.80 16 6 N -0.37 -12.78 12.01 -54.19 -0.65 -13.43 16 7 C 0.03 0.96 11.95 87.29 1.04 2.00 16 8 C -0.28 -9.67 6.47 -18.75 -0.12 -9.79 16 9 C 0.59 22.25 7.81 86.66 0.68 22.92 16 10 O -0.57 -22.88 14.86 -4.08 -0.06 -22.94 16 11 N -0.68 -25.49 3.86 -466.40 -1.80 -27.29 16 12 C 0.14 4.92 4.44 86.38 0.38 5.30 16 13 C 0.16 5.64 3.03 45.12 0.14 5.78 16 14 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 15 C -0.12 -3.54 5.40 30.82 0.17 -3.38 16 16 C -0.10 -2.93 5.88 30.62 0.18 -2.75 16 17 C -0.14 -4.69 6.08 30.67 0.19 -4.51 16 18 C 0.18 7.84 5.25 86.36 0.45 8.30 16 19 N -0.60 -26.47 2.97 -674.41 -2.00 -28.47 16 20 C -0.23 -11.33 6.93 84.03 0.58 -10.75 16 21 H 0.06 3.04 5.91 -2.91 -0.02 3.03 16 22 C -0.03 -1.32 5.01 84.86 0.43 -0.89 16 23 N -0.92 -50.05 11.16 21.65 0.24 -49.81 16 24 Si 0.93 44.22 29.57 68.60 2.03 46.25 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 27 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 3.13 5.89 -2.38 -0.01 3.12 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.21 6.77 7.88 -2.91 -0.02 6.74 16 36 H 0.41 16.14 6.75 -92.71 -0.63 15.51 16 37 H 0.05 1.97 7.42 -2.39 -0.02 1.95 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.05 2.54 6.18 -2.39 -0.01 2.52 16 46 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.25 13.45 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -60.01 373.21 4.51 -55.51 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.35 Total: 26.99 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 5.55 Total: 9.41 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -4.21 Total: -119.01 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.79 Total: -19.15 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.01 4.51 -55.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024742428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.299 kcal (2) G-P(sol) polarization free energy of solvation -60.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds