Wall clock time and date at job start Tue Mar 31 2020 13:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50692 * 109.47247 * 2 1 4 4 N 1.30620 * 125.42553 * 90.02276 * 3 2 1 5 5 C 1.33696 * 108.99538 * 179.70750 * 4 3 2 6 6 C 1.50700 * 126.27015 * 180.27092 * 5 4 3 7 7 C 1.36342 * 107.45108 * 0.43522 * 5 4 3 8 8 C 1.46721 * 126.64005 * 179.83614 * 7 5 4 9 9 O 1.21688 * 120.00417 * 359.71252 * 8 7 5 10 10 N 1.34780 * 120.00154 * 179.71321 * 8 7 5 11 11 C 1.46496 * 120.00100 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46925 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.58377 * 299.78176 * 12 11 10 14 14 C 1.53193 * 109.58606 * 179.35390 * 12 11 10 15 15 C 1.53040 * 109.31009 * 185.57644 * 14 12 11 16 16 C 1.53039 * 109.53632 * 61.36904 * 15 14 12 17 17 C 1.53191 * 109.31082 * 298.63071 * 16 15 14 18 18 N 1.46922 * 108.77804 * 54.63662 * 17 16 15 19 19 C 1.36936 * 120.63259 * 126.36831 * 18 17 16 20 20 H 1.07996 * 120.00261 * 211.85628 * 19 18 17 21 21 C 1.38815 * 119.99790 * 31.84996 * 19 18 17 22 22 N 1.31622 * 119.99828 * 11.93580 * 21 19 18 23 23 Si 1.86801 * 119.99868 * 191.93017 * 21 19 18 24 24 H 1.48498 * 109.47144 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46831 * 120.00602 * 23 21 19 26 26 H 1.48511 * 109.46808 * 240.00264 * 23 21 19 27 27 O 1.33668 * 125.42148 * 270.00292 * 3 2 1 28 28 H 1.09004 * 109.47233 * 299.99714 * 1 2 3 29 29 H 1.08994 * 109.47484 * 59.99943 * 1 2 3 30 30 H 1.09000 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46911 * 239.99853 * 2 1 3 32 32 H 1.08997 * 109.47136 * 120.00441 * 2 1 3 33 33 H 1.08996 * 109.47085 * 270.19140 * 6 5 4 34 34 H 1.09002 * 109.47073 * 30.19799 * 6 5 4 35 35 H 1.09007 * 109.46549 * 150.19705 * 6 5 4 36 36 H 0.97005 * 119.99209 * 359.72775 * 10 8 7 37 37 H 1.08994 * 109.47385 * 300.00022 * 11 10 8 38 38 H 1.09004 * 109.46840 * 60.00657 * 11 10 8 39 39 H 1.08994 * 109.49624 * 305.53111 * 14 12 11 40 40 H 1.09000 * 109.49580 * 65.62849 * 14 12 11 41 41 H 1.09000 * 109.46181 * 301.33952 * 15 14 12 42 42 H 1.09007 * 109.44507 * 181.38274 * 15 14 12 43 43 H 1.09001 * 109.49439 * 178.68505 * 16 15 14 44 44 H 1.08997 * 109.50293 * 58.58534 * 16 15 14 45 45 H 1.09007 * 109.58406 * 294.84880 * 17 16 15 46 46 H 1.08994 * 109.70514 * 174.49627 * 17 16 15 47 47 H 0.96996 * 119.99831 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2851 2.1344 1.0644 5 6 2.7185 3.3413 0.6862 6 6 3.1261 4.4687 1.5995 7 6 2.7207 3.3663 -0.6770 8 6 3.1184 4.4908 -1.5314 9 8 3.4888 5.5355 -1.0291 10 7 3.0736 4.3667 -2.8728 11 6 3.4702 5.4897 -3.7259 12 6 3.3268 5.0890 -5.1956 13 1 3.9695 4.2340 -5.4056 14 6 3.7255 6.2669 -6.0902 15 6 3.4483 5.9087 -7.5520 16 6 1.9526 5.6445 -7.7395 17 6 1.5338 4.4595 -6.8635 18 7 1.9286 4.7348 -5.4753 19 6 1.0109 4.6630 -4.4616 20 1 1.1043 5.3096 -3.6017 21 6 -0.0398 3.7590 -4.5393 22 7 -0.0300 2.8160 -5.4575 23 14 -1.4673 3.8809 -3.3406 24 1 -1.2400 5.0190 -2.4142 25 1 -2.7284 4.1001 -4.0935 26 1 -1.5685 2.6205 -2.5616 27 8 2.2905 2.1512 -1.0893 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2567 5.0864 1.8244 34 1 3.5298 4.0586 2.5252 35 1 3.8866 5.0765 1.1091 36 1 2.7822 3.5326 -3.2731 37 1 2.8296 6.3469 -3.5193 38 1 4.5077 5.7534 -3.5204 39 1 3.1437 7.1464 -5.8145 40 1 4.7873 6.4778 -5.9624 41 1 4.0115 5.0147 -7.8199 42 1 3.7541 6.7359 -8.1927 43 1 1.7525 5.4122 -8.7855 44 1 1.3874 6.5298 -7.4483 45 1 2.0305 3.5540 -7.2120 46 1 0.4533 4.3271 -6.9166 47 1 -0.7639 2.1841 -5.5115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024749524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:40 Heat of formation + Delta-G solvation = -26.834964 kcal Electronic energy + Delta-G solvation = -28728.740404 eV Core-core repulsion = 24912.493732 eV Total energy + Delta-G solvation = -3816.246672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.55758 -40.77135 -39.31976 -36.61262 -35.70254 -35.21266 -34.93072 -32.54340 -31.81738 -31.63622 -29.11309 -27.61804 -26.60213 -25.55976 -23.84350 -23.01236 -22.53477 -22.18063 -21.52626 -20.73345 -19.36458 -18.18104 -18.12244 -17.36045 -17.07228 -16.91829 -16.14236 -15.78358 -15.72308 -15.37578 -15.25251 -14.86856 -14.84386 -14.58877 -14.31445 -14.16089 -14.08737 -13.68207 -13.65741 -13.45166 -13.26705 -12.93013 -12.86290 -12.71268 -12.60494 -12.36830 -12.23757 -12.09272 -12.08199 -11.98773 -11.81593 -11.53218 -11.33371 -11.11207 -10.98538 -10.57364 -10.18924 -9.75984 -8.57281 -7.87580 -5.34685 -0.29648 1.23828 1.30692 1.35851 1.37297 1.42752 1.97559 2.23722 2.42962 2.79417 3.27943 3.54639 3.60777 3.68124 3.95538 4.08233 4.12012 4.18131 4.22539 4.26381 4.41209 4.43138 4.52453 4.55375 4.63082 4.65223 4.71606 4.77169 4.84230 4.86022 4.91492 4.95521 4.99696 5.13337 5.18383 5.22645 5.26256 5.28357 5.34189 5.46244 5.49169 5.62432 5.71825 5.84146 6.32210 6.41639 6.55370 7.01046 7.16759 7.85229 8.38124 9.16595 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.005112 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.442576 B = 5476.349416 C = 6775.832535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C 0.219 3.781 4 N -0.502 5.502 5 C 0.070 3.930 6 C -0.073 4.073 7 C -0.138 4.138 8 C 0.598 3.402 9 O -0.552 6.552 10 N -0.681 5.681 11 C 0.137 3.863 12 C 0.158 3.842 13 H 0.033 0.967 14 C -0.120 4.120 15 C -0.103 4.103 16 C -0.135 4.135 17 C 0.178 3.822 18 N -0.601 5.601 19 C -0.235 4.235 20 H 0.058 0.942 21 C -0.027 4.027 22 N -0.919 5.919 23 Si 0.927 3.073 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.290 1.290 27 O -0.195 6.195 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.412 0.588 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.000 1.000 46 H 0.050 0.950 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.866 -2.441 5.689 9.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.066 4.066 3 C 0.014 3.986 4 N -0.232 5.232 5 C -0.055 4.055 6 C -0.129 4.129 7 C -0.193 4.193 8 C 0.384 3.616 9 O -0.434 6.434 10 N -0.329 5.329 11 C 0.014 3.986 12 C 0.052 3.948 13 H 0.050 0.950 14 C -0.160 4.160 15 C -0.140 4.140 16 C -0.174 4.174 17 C 0.053 3.947 18 N -0.326 5.326 19 C -0.365 4.365 20 H 0.076 0.924 21 C -0.224 4.224 22 N -0.565 5.565 23 Si 0.757 3.243 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.217 1.217 27 O -0.082 6.082 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.156 0.844 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.249 0.751 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.019 0.981 46 H 0.068 0.932 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.928 -2.059 6.507 9.725 hybrid contribution -1.453 -0.247 -0.480 1.551 sum 5.474 -2.306 6.027 8.462 Atomic orbital electron populations 1.21798 0.92760 1.04654 1.01552 1.20510 0.96951 0.81564 1.07583 1.27617 0.95099 0.97855 0.78032 1.70336 1.18964 1.03751 1.30186 1.22491 0.96975 0.94772 0.91240 1.20397 1.02771 0.92330 0.97443 1.23024 1.13763 0.86804 0.95681 1.16438 0.78456 0.84576 0.82168 1.90756 1.50819 1.27384 1.74476 1.46010 1.63924 1.18455 1.04552 1.21442 0.99546 0.88313 0.89325 1.20932 0.86332 0.95904 0.91647 0.94979 1.21881 1.01339 0.97375 0.95369 1.21347 0.95391 1.01270 0.96008 1.22049 0.97098 0.99125 0.99156 1.20589 0.98691 0.92668 0.82796 1.44245 1.03896 1.81399 1.03041 1.19176 1.04406 1.12978 0.99987 0.92450 1.25431 1.01662 0.95994 0.99297 1.70083 1.32213 1.17513 1.36734 0.85824 0.81735 0.77004 0.79692 1.21148 1.21549 1.21666 1.84529 1.63384 1.22211 1.38099 0.92261 0.94814 0.87444 0.86867 0.84444 0.89712 0.88506 0.89294 0.75123 0.92815 0.89706 0.92581 0.89678 0.92463 0.90616 0.91768 0.93567 0.98144 0.93177 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.89 71.98 0.71 -2.52 16 2 C -0.03 -0.60 6.56 29.85 0.20 -0.40 16 3 C 0.22 6.96 7.57 88.29 0.67 7.62 16 4 N -0.50 -16.68 11.26 -291.06 -3.28 -19.96 16 5 C 0.07 2.43 7.16 41.83 0.30 2.73 16 6 C -0.07 -2.05 9.87 71.24 0.70 -1.34 16 7 C -0.14 -5.37 7.18 24.05 0.17 -5.19 16 8 C 0.60 24.24 7.79 86.46 0.67 24.91 16 9 O -0.55 -23.04 14.80 -4.31 -0.06 -23.11 16 10 N -0.68 -27.42 3.84 -467.04 -1.79 -29.21 16 11 C 0.14 5.03 4.43 86.38 0.38 5.41 16 12 C 0.16 5.85 3.01 44.98 0.14 5.99 16 13 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 14 C -0.12 -3.61 5.37 30.67 0.16 -3.44 16 15 C -0.10 -2.97 5.88 30.62 0.18 -2.79 16 16 C -0.14 -4.74 6.08 30.67 0.19 -4.56 16 17 C 0.18 8.02 5.26 86.36 0.45 8.47 16 18 N -0.60 -27.41 2.97 -675.23 -2.01 -29.41 16 19 C -0.23 -11.97 6.94 84.03 0.58 -11.39 16 20 H 0.06 3.05 5.89 -2.91 -0.02 3.03 16 21 C -0.03 -1.44 5.01 84.86 0.43 -1.01 16 22 N -0.92 -51.04 11.16 21.65 0.24 -50.79 16 23 Si 0.93 45.06 29.57 68.60 2.03 47.09 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 27 O -0.20 -7.45 10.57 -7.12 -0.08 -7.53 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.09 2.63 6.47 -2.38 -0.02 2.62 16 36 H 0.41 17.97 7.19 -92.70 -0.67 17.31 16 37 H 0.05 2.16 7.42 -2.39 -0.02 2.14 16 38 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 46 H 0.05 2.61 6.18 -2.39 -0.01 2.59 16 47 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -64.19 375.23 1.30 -62.89 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.31 Total: 27.57 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 5.94 Total: 22.47 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -6.83 Total: -129.38 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.14 Total: -30.64 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.19 1.30 -62.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024749524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.050 kcal (2) G-P(sol) polarization free energy of solvation -64.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds