Wall clock time and date at job start Tue Mar 31 2020 13:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47370 * 2 1 4 4 O 1.34256 * 126.52796 * 270.18407 * 3 2 1 5 5 C 1.34051 * 108.22910 * 180.26652 * 4 3 2 6 6 N 1.29935 * 109.24216 * 359.73310 * 5 4 3 7 7 C 1.36067 * 108.47538 * 0.02562 * 6 5 4 8 8 C 1.47420 * 126.44694 * 179.97438 * 7 6 5 9 9 O 1.21621 * 120.00061 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00277 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00227 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47211 * 34.99789 * 11 10 8 13 13 C 1.53004 * 109.46834 * 274.99611 * 11 10 8 14 14 C 1.53007 * 109.47062 * 154.99833 * 11 10 8 15 15 H 1.08993 * 109.49376 * 304.93565 * 14 11 10 16 16 C 1.53034 * 109.49572 * 184.83673 * 14 11 10 17 17 C 1.53038 * 109.53854 * 178.68459 * 16 14 11 18 18 C 1.53194 * 109.31332 * 61.36275 * 17 16 14 19 19 N 1.46925 * 108.77532 * 305.36663 * 18 17 16 20 20 C 1.36937 * 120.63197 * 233.58691 * 19 18 17 21 21 H 1.07999 * 120.00348 * 152.30639 * 20 19 18 22 22 C 1.38819 * 119.99903 * 332.30989 * 20 19 18 23 23 N 1.31620 * 119.99642 * 342.59555 * 22 20 19 24 24 Si 1.86797 * 120.00051 * 162.59977 * 22 20 19 25 25 H 1.48502 * 109.47161 * 94.34865 * 24 22 20 26 26 H 1.48496 * 109.46986 * 214.34931 * 24 22 20 27 27 H 1.48501 * 109.47026 * 334.34952 * 24 22 20 28 28 C 1.46929 * 118.73677 * 53.60848 * 19 18 17 29 29 H 1.08997 * 109.47658 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47202 * 299.99992 * 1 2 3 31 31 H 1.09006 * 109.46839 * 59.99459 * 1 2 3 32 32 H 1.09007 * 109.46886 * 239.99809 * 2 1 3 33 33 H 1.09006 * 109.46839 * 120.00541 * 2 1 3 34 34 H 1.07995 * 125.37831 * 179.70289 * 5 4 3 35 35 H 0.96999 * 119.99590 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.46790 * 59.99938 * 13 11 10 37 37 H 1.09000 * 109.46864 * 300.00244 * 13 11 10 38 38 H 1.08997 * 109.47166 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.46299 * 298.70172 * 16 14 11 40 40 H 1.09001 * 109.46376 * 58.66052 * 16 14 11 41 41 H 1.08999 * 109.49775 * 301.41265 * 17 16 14 42 42 H 1.08997 * 109.52963 * 181.33211 * 17 16 14 43 43 H 1.09004 * 109.58836 * 185.57873 * 18 17 16 44 44 H 1.08995 * 109.70240 * 65.22479 * 18 17 16 45 45 H 0.97001 * 119.99864 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.58133 * 186.60538 * 28 19 18 47 47 H 1.09002 * 109.58647 * 66.17975 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2955 2.1753 -1.0788 5 6 2.7267 3.3728 -0.6580 6 7 2.7358 3.3923 0.6412 7 6 2.3029 2.1842 1.0936 8 6 2.1597 1.7770 2.5032 9 8 1.7600 0.6613 2.7762 10 7 2.4715 2.6411 3.4893 11 6 2.3297 2.2362 4.8901 12 1 2.5774 1.1794 4.9898 13 6 0.8868 2.4669 5.3440 14 6 3.2767 3.0662 5.7593 15 1 4.2946 2.9709 5.3815 16 6 3.2178 2.5627 7.2033 17 6 4.1890 3.3707 8.0670 18 6 3.7741 4.8453 8.0518 19 7 3.6876 5.2978 6.6566 20 6 4.3728 6.4075 6.2393 21 1 4.6822 6.4951 5.2083 22 6 4.6697 7.4200 7.1414 23 7 4.0215 7.4937 8.2845 24 14 5.9892 8.6776 6.7330 25 1 5.3594 9.8744 6.1195 26 1 6.6974 9.0735 7.9766 27 1 6.9596 8.0846 5.7780 28 6 2.8514 4.5373 5.7179 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 3.0205 4.1918 -1.2977 35 1 2.7906 3.5309 3.2716 36 1 0.2123 1.8757 4.7248 37 1 0.6392 3.5237 5.2443 38 1 0.7814 2.1661 6.3864 39 1 2.2048 2.6811 7.5882 40 1 3.4962 1.5093 7.2323 41 1 5.1986 3.2727 7.6681 42 1 4.1643 2.9964 9.0904 43 1 4.5175 5.4396 8.5832 44 1 2.8031 4.9589 8.5337 45 1 4.2292 8.2010 8.9151 46 1 2.9861 4.9283 4.7094 47 1 1.8044 4.6234 6.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025369226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:08 Heat of formation + Delta-G solvation = -7.757761 kcal Electronic energy + Delta-G solvation = -27881.230023 eV Core-core repulsion = 24065.810601 eV Total energy + Delta-G solvation = -3815.419422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.62936 -39.76990 -37.98989 -35.28817 -35.01386 -34.27914 -32.95030 -31.04983 -30.42331 -29.38934 -28.04462 -25.28059 -25.18296 -23.94510 -23.37361 -22.19042 -21.68727 -20.56483 -20.12826 -18.72298 -18.10165 -17.02867 -16.71264 -16.29654 -15.87238 -15.18912 -14.93168 -14.82321 -14.70648 -14.30547 -13.96771 -13.71537 -13.65796 -13.41301 -13.05648 -12.87002 -12.51648 -12.33942 -12.24126 -12.00717 -11.78546 -11.61716 -11.51351 -11.45683 -10.97922 -10.90590 -10.86640 -10.54463 -10.43829 -10.18308 -10.13932 -9.97579 -9.82916 -9.57689 -9.36629 -9.18825 -8.82795 -8.43591 -6.63753 -5.76921 -3.18532 0.93399 1.91498 2.34862 3.20785 3.29885 3.38252 3.45620 3.48332 3.89568 4.35420 4.50535 4.66251 4.83145 4.94159 5.04025 5.10499 5.25647 5.30686 5.42429 5.46078 5.54313 5.57626 5.60433 5.71531 5.73960 5.82771 5.86945 5.92708 5.94062 6.06079 6.15730 6.25932 6.28081 6.38208 6.52601 6.62893 6.66797 6.73334 6.82038 6.89538 7.01928 7.23952 7.42698 7.68311 7.69985 7.81746 8.24346 8.46900 9.23463 9.87162 10.43769 11.31435 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.003291 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.188088 B = 8505.843662 C = 9904.260094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.041 3.959 4 O -0.201 6.201 5 C 0.173 3.827 6 N -0.459 5.459 7 C -0.072 4.072 8 C 0.601 3.399 9 O -0.541 6.541 10 N -0.701 5.701 11 C 0.149 3.851 12 H 0.083 0.917 13 C -0.165 4.165 14 C -0.113 4.113 15 H 0.072 0.928 16 C -0.100 4.100 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.900 3.100 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.151 3.849 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.255 0.745 35 H 0.411 0.589 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.017 0.983 45 H 0.253 0.747 46 H 0.048 0.952 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.201 -13.672 -15.303 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.016 4.016 4 O -0.087 6.087 5 C -0.055 4.055 6 N -0.188 5.188 7 C -0.192 4.192 8 C 0.386 3.614 9 O -0.420 6.420 10 N -0.351 5.351 11 C 0.045 3.955 12 H 0.101 0.899 13 C -0.223 4.223 14 C -0.134 4.134 15 H 0.090 0.910 16 C -0.138 4.138 17 C -0.181 4.181 18 C 0.044 3.956 19 N -0.313 5.313 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.547 5.547 24 Si 0.730 3.270 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.204 1.204 28 C 0.024 3.976 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.271 0.729 35 H 0.248 0.752 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.035 0.965 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.273 -13.788 -14.583 20.750 hybrid contribution 0.774 0.956 -0.796 1.465 sum -4.499 -12.832 -15.378 20.528 Atomic orbital electron populations 1.21703 0.93094 1.02848 1.02488 1.20375 0.97095 0.85423 1.05350 1.23798 0.98869 0.95529 0.83394 1.84368 1.63687 1.24350 1.36341 1.28046 0.99124 0.87090 0.91285 1.70799 1.16735 1.21084 1.10148 1.21588 1.10357 0.91498 0.95792 1.16710 0.77568 0.84550 0.82564 1.90755 1.47650 1.20301 1.83275 1.46021 1.65572 1.17538 1.05951 1.21099 0.95950 0.99556 0.78881 0.89863 1.22261 0.95866 1.02628 1.01514 1.21952 0.98615 0.97878 0.94927 0.90951 1.21416 1.00095 0.97933 0.94338 1.22175 0.98698 0.99618 0.97643 1.20789 0.99522 0.89346 0.85979 1.44027 1.52613 1.28724 1.05939 1.19181 1.28164 0.94984 0.95797 0.91750 1.25015 0.99762 0.97079 0.97776 1.70045 1.40636 1.33786 1.10200 0.86315 0.81958 0.81438 0.77286 1.21490 1.21603 1.20445 1.21002 0.93714 0.88758 0.94115 0.91091 0.91675 0.92695 0.89875 0.86443 0.72919 0.75230 0.92876 0.91539 0.91288 0.92219 0.93535 0.92816 0.93229 0.89600 0.96463 0.93704 0.93325 0.95669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.05 -0.41 5.93 -27.88 -0.17 -0.58 16 3 C 0.04 0.47 6.69 -35.08 -0.23 0.23 16 4 O -0.20 -2.03 10.73 6.51 0.07 -1.96 16 5 C 0.17 1.60 13.19 51.96 0.69 2.28 16 6 N -0.46 -5.95 11.06 -11.48 -0.13 -6.08 16 7 C -0.07 -0.99 6.99 -83.02 -0.58 -1.57 16 8 C 0.60 9.07 7.78 -12.52 -0.10 8.97 16 9 O -0.54 -8.72 14.47 5.26 0.08 -8.65 16 10 N -0.70 -10.54 5.01 -54.87 -0.27 -10.82 16 11 C 0.15 2.25 2.35 -67.92 -0.16 2.09 16 12 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 13 C -0.16 -2.36 8.76 37.16 0.33 -2.04 16 14 C -0.11 -1.93 2.27 -90.50 -0.21 -2.13 16 15 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 16 C -0.10 -1.66 4.89 -26.69 -0.13 -1.79 16 17 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 18 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 19 N -0.59 -14.65 2.99 -172.31 -0.52 -15.16 16 20 C -0.25 -6.89 9.59 -15.06 -0.14 -7.03 16 21 H 0.06 1.74 7.89 -52.49 -0.41 1.32 16 22 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 23 N -0.90 -26.16 11.19 55.49 0.62 -25.54 16 24 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.15 3.07 5.26 -3.71 -0.02 3.05 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.12 1.22 6.48 -51.93 -0.34 0.89 16 34 H 0.26 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.41 6.32 7.00 -40.82 -0.29 6.03 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.00 6.23 -51.93 -0.32 0.68 16 38 H 0.07 0.93 6.59 -51.93 -0.34 0.59 16 39 H 0.06 0.97 6.62 -51.93 -0.34 0.63 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.05 0.98 6.75 -51.93 -0.35 0.63 16 47 H 0.03 0.53 6.06 -51.93 -0.31 0.21 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -31.94 371.28 -7.42 -39.36 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.20 Total: 4.82 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -0.63 Total: 1.76 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.30 Total: -57.60 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.15 Total: -10.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.94 -7.42 -39.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025369226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.599 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds