Wall clock time and date at job start Tue Mar 31 2020 13:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46797 * 2 1 4 4 N 1.29926 * 125.38300 * 90.02754 * 3 2 1 5 5 C 1.36067 * 108.48189 * 180.02562 * 4 3 2 6 6 C 1.47417 * 126.45159 * 179.97438 * 5 4 3 7 7 O 1.21616 * 119.99902 * 179.97438 * 6 5 4 8 8 N 1.34778 * 120.00105 * 359.96917 * 6 5 4 9 9 C 1.46496 * 119.99777 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.47225 * 35.00161 * 9 8 6 11 11 C 1.52998 * 109.47484 * 275.00218 * 9 8 6 12 12 C 1.53001 * 109.46910 * 154.99864 * 9 8 6 13 13 H 1.09000 * 109.49440 * 60.06406 * 12 9 8 14 14 C 1.53038 * 109.49846 * 180.16121 * 12 9 8 15 15 C 1.53045 * 109.53926 * 181.32053 * 14 12 9 16 16 C 1.53198 * 109.30808 * 298.63669 * 15 14 12 17 17 N 1.46919 * 108.77636 * 54.63507 * 16 15 14 18 18 C 1.36944 * 120.63170 * 126.36687 * 17 16 15 19 19 H 1.07996 * 119.99889 * 331.84897 * 18 17 16 20 20 C 1.38810 * 120.00096 * 151.83815 * 18 17 16 21 21 N 1.31625 * 120.00002 * 343.08826 * 20 18 17 22 22 Si 1.86797 * 119.99833 * 163.07947 * 20 18 17 23 23 H 1.48501 * 109.46950 * 60.00558 * 22 20 18 24 24 H 1.48501 * 109.47048 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47663 * 300.00221 * 22 20 18 26 26 C 1.46928 * 118.74229 * 306.39033 * 17 16 15 27 27 C 1.36097 * 107.09721 * 359.97438 * 5 4 3 28 28 O 1.34053 * 125.37169 * 270.01843 * 3 2 1 29 29 H 1.09003 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46976 * 300.00143 * 1 2 3 31 31 H 1.08993 * 109.47091 * 60.00627 * 1 2 3 32 32 H 1.08990 * 109.47244 * 239.99478 * 2 1 3 33 33 H 1.09003 * 109.46937 * 119.99506 * 2 1 3 34 34 H 0.96992 * 119.99646 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47391 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.46843 * 300.00177 * 11 9 8 37 37 H 1.08998 * 109.47200 * 60.00230 * 11 9 8 38 38 H 1.09000 * 109.46365 * 301.33695 * 14 12 9 39 39 H 1.09002 * 109.46006 * 61.29827 * 14 12 9 40 40 H 1.08996 * 109.49616 * 178.68578 * 15 14 12 41 41 H 1.08996 * 109.52400 * 58.59963 * 15 14 12 42 42 H 1.08997 * 109.58927 * 294.84479 * 16 15 14 43 43 H 1.09008 * 109.69911 * 174.49301 * 16 15 14 44 44 H 0.96999 * 119.99501 * 179.97438 * 21 20 18 45 45 H 1.09008 * 109.58325 * 293.82450 * 26 17 16 46 46 H 1.09001 * 109.58749 * 173.39793 * 26 17 16 47 47 H 1.08003 * 126.52240 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2835 2.1300 1.0593 5 6 2.7167 3.3577 0.6637 6 6 3.1106 4.4730 1.5436 7 8 3.4825 5.5257 1.0615 8 7 3.0584 4.3260 2.8823 9 6 3.4504 5.4341 3.7567 10 1 3.1596 6.3792 3.2981 11 6 4.9666 5.4114 3.9603 12 6 2.7518 5.2876 5.1100 13 1 3.0433 4.3431 5.5695 14 6 3.1577 6.4471 6.0226 15 6 2.4852 6.2838 7.3876 16 6 0.9640 6.3177 7.2102 17 7 0.5802 5.2998 6.2227 18 6 -0.3682 4.3587 6.5233 19 1 -0.5152 4.0480 7.5471 20 6 -1.1408 3.8043 5.5120 21 7 -1.2106 4.3953 4.3380 22 14 -2.0811 2.2194 5.8173 23 1 -3.0407 2.4202 6.9327 24 1 -2.8226 1.8393 4.5881 25 1 -1.1272 1.1385 6.1735 26 6 1.2336 5.3102 4.9068 27 6 2.7178 3.3623 -0.6972 28 8 2.2906 2.1526 -1.0931 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 2.7621 3.4862 3.2668 35 1 5.2582 6.2357 4.6113 36 1 5.2575 4.4663 4.4189 37 1 5.4643 5.5158 2.9962 38 1 4.2404 6.4480 6.1490 39 1 2.8440 7.3895 5.5736 40 1 2.7932 7.0972 8.0445 41 1 2.7791 5.3304 7.8267 42 1 0.6592 7.3027 6.8568 43 1 0.4781 6.1046 8.1624 44 1 -1.7502 4.0077 3.6313 45 1 0.9508 6.2132 4.3656 46 1 0.9276 4.4309 4.3399 47 1 3.0076 4.1827 -1.3370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025389658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:00 Heat of formation + Delta-G solvation = -10.715292 kcal Electronic energy + Delta-G solvation = -28219.105698 eV Core-core repulsion = 24403.558028 eV Total energy + Delta-G solvation = -3815.547670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.41045 -39.52226 -37.77540 -35.09278 -35.00657 -33.99892 -32.99830 -31.19570 -29.81083 -29.44124 -28.61937 -25.28488 -24.67885 -24.32258 -22.87402 -21.96707 -21.27723 -20.31822 -20.08517 -19.10174 -17.89548 -16.83413 -16.71314 -16.37611 -15.75273 -15.01061 -14.90145 -14.60570 -14.48827 -14.10657 -13.71185 -13.64908 -13.39566 -13.23970 -13.09841 -12.83798 -12.63175 -12.42428 -12.13063 -11.94093 -11.90536 -11.42100 -11.35532 -11.16806 -11.01006 -10.86228 -10.75373 -10.65869 -10.40933 -10.21575 -10.04430 -9.96648 -9.84514 -9.52733 -9.37186 -9.02704 -8.63575 -8.42551 -6.62222 -5.74725 -3.17734 1.15835 2.07921 2.54563 3.35716 3.39236 3.44614 3.46073 3.55601 3.87079 4.51505 4.70608 4.82597 4.95423 5.00584 5.10019 5.18585 5.37202 5.52174 5.53965 5.56486 5.57750 5.60915 5.63038 5.65327 5.79098 5.81228 5.85788 6.00468 6.09048 6.14558 6.19230 6.22774 6.35122 6.45582 6.49346 6.53686 6.70312 6.80302 6.88407 6.92648 7.05465 7.39165 7.48455 7.70729 7.82428 7.90052 8.46340 8.48526 9.24721 9.88570 10.46007 11.32727 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.005229 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.309529 B = 5353.692614 C = 7762.184668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.025 4.025 3 C 0.195 3.805 4 N -0.451 5.451 5 C -0.062 4.062 6 C 0.603 3.397 7 O -0.547 6.547 8 N -0.693 5.693 9 C 0.149 3.851 10 H 0.086 0.914 11 C -0.161 4.161 12 C -0.121 4.121 13 H 0.068 0.932 14 C -0.101 4.101 15 C -0.133 4.133 16 C 0.143 3.857 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.005 3.995 21 N -0.898 5.898 22 Si 0.899 3.101 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.180 3.820 27 C 0.003 3.997 28 O -0.199 6.199 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.016 0.984 43 H 0.051 0.949 44 H 0.253 0.747 45 H 0.015 0.985 46 H 0.090 0.910 47 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.692 -5.482 -8.022 13.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.063 4.063 3 C -0.014 4.014 4 N -0.181 5.181 5 C -0.182 4.182 6 C 0.388 3.612 7 O -0.426 6.426 8 N -0.342 5.342 9 C 0.045 3.955 10 H 0.104 0.896 11 C -0.219 4.219 12 C -0.141 4.141 13 H 0.086 0.914 14 C -0.139 4.139 15 C -0.172 4.172 16 C 0.017 3.983 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.194 4.194 21 N -0.542 5.542 22 Si 0.729 3.271 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.054 3.946 27 C -0.071 4.071 28 O -0.085 6.085 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.247 0.753 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.108 0.892 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 9.747 -4.997 -7.859 13.481 hybrid contribution -0.623 -0.833 -0.423 1.123 sum 9.124 -5.830 -8.283 13.632 Atomic orbital electron populations 1.21815 0.92837 1.03057 1.03483 1.20100 0.97099 0.83921 1.05158 1.26356 0.99792 0.96967 0.78310 1.70806 1.14922 1.02601 1.29774 1.21884 1.08933 0.94364 0.93036 1.16693 0.77414 0.84910 0.82160 1.90781 1.49067 1.27193 1.75563 1.45839 1.65432 1.17976 1.04946 1.21052 0.93634 0.90174 0.90662 0.89619 1.22214 0.95987 1.02042 1.01665 1.22156 1.00536 0.98929 0.92523 0.91352 1.21438 0.98575 0.97995 0.95921 1.21995 0.98747 1.00453 0.96026 1.20924 0.91732 0.92092 0.93573 1.44024 1.43765 1.31794 1.11828 1.19116 1.11303 1.14340 0.93651 0.91847 1.25032 0.97674 0.99656 0.97078 1.70031 1.42022 1.38089 1.04012 0.86417 0.79634 0.84099 0.76912 1.20989 1.21700 1.20992 1.20778 0.85029 1.01419 0.87369 1.25216 0.99541 0.86588 0.95750 1.84361 1.63592 1.22579 1.38006 0.90866 0.91176 0.92145 0.88923 0.87417 0.75327 0.91361 0.92711 0.92715 0.93089 0.92588 0.93159 0.92463 0.96630 0.93001 0.93704 0.96649 0.89167 0.75470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.02 -0.23 6.56 -27.88 -0.18 -0.41 16 3 C 0.20 2.58 7.56 -13.08 -0.10 2.48 16 4 N -0.45 -7.29 11.06 -7.65 -0.08 -7.37 16 5 C -0.06 -1.01 6.99 -83.02 -0.58 -1.60 16 6 C 0.60 10.95 7.78 -12.52 -0.10 10.85 16 7 O -0.55 -10.78 16.55 5.26 0.09 -10.70 16 8 N -0.69 -12.32 4.47 -54.88 -0.25 -12.56 16 9 C 0.15 2.56 2.16 -67.93 -0.15 2.41 16 10 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 11 C -0.16 -2.30 9.14 37.16 0.34 -1.96 16 12 C -0.12 -2.25 1.97 -90.50 -0.18 -2.43 16 13 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.10 -1.69 4.86 -26.69 -0.13 -1.82 16 15 C -0.13 -2.31 6.08 -26.61 -0.16 -2.47 16 16 C 0.14 3.04 6.52 -3.71 -0.02 3.02 16 17 N -0.59 -14.90 2.99 -172.32 -0.52 -15.42 16 18 C -0.25 -7.00 9.58 -15.06 -0.14 -7.14 16 19 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 21 N -0.90 -26.16 11.20 55.49 0.62 -25.54 16 22 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.18 4.28 4.34 -3.71 -0.02 4.26 16 27 C 0.00 0.04 11.95 29.96 0.36 0.39 16 28 O -0.20 -2.55 10.73 6.51 0.07 -2.48 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.41 7.42 8.15 -40.82 -0.33 7.09 16 35 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.73 6.36 -51.93 -0.33 0.40 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 1.08 7.93 -51.92 -0.41 0.67 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.09 2.38 5.57 -51.93 -0.29 2.09 16 47 H 0.23 2.29 8.06 -52.48 -0.42 1.86 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -32.47 380.28 -7.71 -40.18 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.56 Total: 6.92 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.78 Total: 4.55 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.22 Total: -60.89 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.16 Total: -13.17 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.47 -7.71 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025389658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.461 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds