Wall clock time and date at job start Tue Mar 31 2020 13:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46797 * 2 1 4 4 N 1.29926 * 125.38300 * 90.02754 * 3 2 1 5 5 C 1.36067 * 108.48189 * 180.02562 * 4 3 2 6 6 C 1.47417 * 126.45159 * 179.97438 * 5 4 3 7 7 O 1.21616 * 119.99902 * 179.97438 * 6 5 4 8 8 N 1.34778 * 120.00105 * 359.96917 * 6 5 4 9 9 C 1.46496 * 119.99777 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.47225 * 35.00161 * 9 8 6 11 11 C 1.52998 * 109.47484 * 275.00218 * 9 8 6 12 12 C 1.53001 * 109.46910 * 154.99864 * 9 8 6 13 13 H 1.09000 * 109.49440 * 60.06406 * 12 9 8 14 14 C 1.53038 * 109.49846 * 180.16121 * 12 9 8 15 15 C 1.53045 * 109.53926 * 181.32053 * 14 12 9 16 16 C 1.53198 * 109.30808 * 298.63669 * 15 14 12 17 17 N 1.46919 * 108.77636 * 54.63507 * 16 15 14 18 18 C 1.36944 * 120.63170 * 126.36687 * 17 16 15 19 19 H 1.07996 * 119.99889 * 331.84897 * 18 17 16 20 20 C 1.38810 * 120.00096 * 151.83815 * 18 17 16 21 21 N 1.31625 * 120.00002 * 343.08826 * 20 18 17 22 22 Si 1.86797 * 119.99833 * 163.07947 * 20 18 17 23 23 H 1.48501 * 109.46950 * 60.00558 * 22 20 18 24 24 H 1.48501 * 109.47048 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47663 * 300.00221 * 22 20 18 26 26 C 1.46928 * 118.74229 * 306.39033 * 17 16 15 27 27 C 1.36097 * 107.09721 * 359.97438 * 5 4 3 28 28 O 1.34053 * 125.37169 * 270.01843 * 3 2 1 29 29 H 1.09003 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46976 * 300.00143 * 1 2 3 31 31 H 1.08993 * 109.47091 * 60.00627 * 1 2 3 32 32 H 1.08990 * 109.47244 * 239.99478 * 2 1 3 33 33 H 1.09003 * 109.46937 * 119.99506 * 2 1 3 34 34 H 0.96992 * 119.99646 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47391 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.46843 * 300.00177 * 11 9 8 37 37 H 1.08998 * 109.47200 * 60.00230 * 11 9 8 38 38 H 1.09000 * 109.46365 * 301.33695 * 14 12 9 39 39 H 1.09002 * 109.46006 * 61.29827 * 14 12 9 40 40 H 1.08996 * 109.49616 * 178.68578 * 15 14 12 41 41 H 1.08996 * 109.52400 * 58.59963 * 15 14 12 42 42 H 1.08997 * 109.58927 * 294.84479 * 16 15 14 43 43 H 1.09008 * 109.69911 * 174.49301 * 16 15 14 44 44 H 0.96999 * 119.99501 * 179.97438 * 21 20 18 45 45 H 1.09008 * 109.58325 * 293.82450 * 26 17 16 46 46 H 1.09001 * 109.58749 * 173.39793 * 26 17 16 47 47 H 1.08003 * 126.52240 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2835 2.1300 1.0593 5 6 2.7167 3.3577 0.6637 6 6 3.1106 4.4730 1.5436 7 8 3.4825 5.5257 1.0615 8 7 3.0584 4.3260 2.8823 9 6 3.4504 5.4341 3.7567 10 1 3.1596 6.3792 3.2981 11 6 4.9666 5.4114 3.9603 12 6 2.7518 5.2876 5.1100 13 1 3.0433 4.3431 5.5695 14 6 3.1577 6.4471 6.0226 15 6 2.4852 6.2838 7.3876 16 6 0.9640 6.3177 7.2102 17 7 0.5802 5.2998 6.2227 18 6 -0.3682 4.3587 6.5233 19 1 -0.5152 4.0480 7.5471 20 6 -1.1408 3.8043 5.5120 21 7 -1.2106 4.3953 4.3380 22 14 -2.0811 2.2194 5.8173 23 1 -3.0407 2.4202 6.9327 24 1 -2.8226 1.8393 4.5881 25 1 -1.1272 1.1385 6.1735 26 6 1.2336 5.3102 4.9068 27 6 2.7178 3.3623 -0.6972 28 8 2.2906 2.1526 -1.0931 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 2.7621 3.4862 3.2668 35 1 5.2582 6.2357 4.6113 36 1 5.2575 4.4663 4.4189 37 1 5.4643 5.5158 2.9962 38 1 4.2404 6.4480 6.1490 39 1 2.8440 7.3895 5.5736 40 1 2.7932 7.0972 8.0445 41 1 2.7791 5.3304 7.8267 42 1 0.6592 7.3027 6.8568 43 1 0.4781 6.1046 8.1624 44 1 -1.7502 4.0077 3.6313 45 1 0.9508 6.2132 4.3656 46 1 0.9276 4.4309 4.3399 47 1 3.0076 4.1827 -1.3370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025389658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:00 Heat of formation + Delta-G solvation = -33.630604 kcal Electronic energy + Delta-G solvation = -28220.099380 eV Core-core repulsion = 24403.558028 eV Total energy + Delta-G solvation = -3816.541353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.49049 -40.95633 -39.37694 -36.66666 -36.09847 -34.93000 -34.77015 -32.80723 -31.57611 -30.58890 -30.04580 -27.15042 -25.96166 -25.28896 -24.30525 -23.70207 -22.44397 -21.63336 -21.49747 -20.66493 -19.15208 -18.68397 -17.91322 -17.53928 -17.17145 -16.86100 -16.10261 -15.85532 -15.71599 -15.50492 -15.32267 -14.95893 -14.92456 -14.68265 -14.47770 -14.13378 -14.06066 -13.71871 -13.62535 -13.39130 -12.95128 -12.77026 -12.68793 -12.61415 -12.39811 -12.33897 -12.17687 -12.09816 -12.00156 -11.89391 -11.71641 -11.51010 -11.44086 -11.12787 -11.03199 -10.54459 -10.22935 -9.95658 -8.66898 -7.86219 -5.32825 0.03725 0.92902 1.44084 1.46796 1.53409 1.53816 2.06002 2.24106 2.50355 2.83445 3.26210 3.53841 3.68150 3.74471 3.95497 4.05993 4.12527 4.17342 4.20593 4.28727 4.33816 4.41360 4.48404 4.53967 4.63462 4.65317 4.75616 4.85103 4.87290 4.91138 4.96277 5.00371 5.04591 5.05654 5.14585 5.18905 5.26784 5.29502 5.36874 5.45766 5.50868 5.57041 5.66872 5.78431 6.29376 6.38367 6.56848 7.05502 7.14623 7.87043 8.39074 9.18030 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.005229 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.309529 B = 5353.692614 C = 7762.184668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.023 4.023 3 C 0.200 3.800 4 N -0.488 5.488 5 C -0.103 4.103 6 C 0.599 3.401 7 O -0.571 6.571 8 N -0.696 5.696 9 C 0.152 3.848 10 H 0.064 0.936 11 C -0.149 4.149 12 C -0.105 4.105 13 H 0.068 0.932 14 C -0.099 4.099 15 C -0.121 4.121 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.264 4.264 19 H 0.066 0.934 20 C -0.048 4.048 21 N -0.929 5.929 22 Si 0.963 3.037 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.275 1.275 26 C 0.192 3.808 27 C 0.026 3.974 28 O -0.192 6.192 29 H 0.100 0.900 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.407 0.593 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.007 0.993 43 H 0.052 0.948 44 H 0.246 0.754 45 H -0.023 1.023 46 H 0.058 0.942 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.309 -6.677 -7.786 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 C -0.010 4.010 4 N -0.218 5.218 5 C -0.221 4.221 6 C 0.385 3.615 7 O -0.452 6.452 8 N -0.344 5.344 9 C 0.047 3.953 10 H 0.083 0.917 11 C -0.207 4.207 12 C -0.125 4.125 13 H 0.086 0.914 14 C -0.136 4.136 15 C -0.160 4.160 16 C 0.009 3.991 17 N -0.334 5.334 18 C -0.395 4.395 19 H 0.084 0.916 20 C -0.243 4.243 21 N -0.575 5.575 22 Si 0.791 3.209 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.201 1.201 26 C 0.067 3.933 27 C -0.048 4.048 28 O -0.078 6.078 29 H 0.119 0.881 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.133 0.867 34 H 0.243 0.757 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.025 0.975 43 H 0.070 0.930 44 H 0.054 0.946 45 H -0.005 1.005 46 H 0.077 0.923 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 11.386 -6.182 -7.579 15.009 hybrid contribution -1.203 -0.433 -0.502 1.374 sum 10.182 -6.614 -8.081 14.585 Atomic orbital electron populations 1.21802 0.93077 1.04300 1.01743 1.20393 0.96662 0.81739 1.07322 1.27204 0.98156 0.97933 0.77701 1.70759 1.16520 1.03059 1.31429 1.21813 1.11737 0.94523 0.94067 1.16977 0.76914 0.85230 0.82337 1.90744 1.50375 1.28164 1.75887 1.45910 1.65412 1.17870 1.05210 1.21040 0.95712 0.89105 0.89417 0.91743 1.22116 0.92932 1.03538 1.02084 1.21920 0.96524 1.00094 0.94001 0.91365 1.21468 1.00847 0.96501 0.94831 1.21879 0.95166 1.01959 0.97024 1.21136 0.94954 0.90519 0.92441 1.44332 1.43837 1.32550 1.12720 1.19456 1.11443 1.14761 0.93793 0.91620 1.25781 0.99032 1.02596 0.96920 1.70217 1.43097 1.39427 1.04761 0.85413 0.78460 0.80504 0.76550 1.20182 1.22219 1.20066 1.20497 0.88527 0.97970 0.86353 1.25752 0.97036 0.87056 0.95002 1.84404 1.63317 1.22325 1.37754 0.88134 0.94635 0.92102 0.85288 0.86650 0.75731 0.89154 0.91592 0.93117 0.89206 0.93012 0.89628 0.92321 0.97503 0.92950 0.94552 1.00532 0.92336 0.72542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.89 71.98 0.71 -1.97 16 2 C -0.02 -0.39 6.56 29.85 0.20 -0.19 16 3 C 0.20 5.14 7.56 88.39 0.67 5.81 16 4 N -0.49 -16.10 11.06 -293.04 -3.24 -19.34 16 5 C -0.10 -3.44 6.99 40.41 0.28 -3.15 16 6 C 0.60 22.55 7.78 86.66 0.67 23.22 16 7 O -0.57 -23.12 16.55 -4.08 -0.07 -23.19 16 8 N -0.70 -25.70 4.47 -445.80 -1.99 -27.70 16 9 C 0.15 5.24 2.16 44.99 0.10 5.34 16 10 H 0.06 2.51 7.58 -2.39 -0.02 2.49 16 11 C -0.15 -3.98 9.14 71.98 0.66 -3.33 16 12 C -0.10 -3.90 1.97 -10.72 -0.02 -3.92 16 13 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 14 C -0.10 -3.07 4.86 30.62 0.15 -2.93 16 15 C -0.12 -3.91 6.08 30.68 0.19 -3.73 16 16 C 0.13 5.70 6.52 86.37 0.56 6.26 16 17 N -0.61 -31.48 2.99 -699.09 -2.09 -33.57 16 18 C -0.26 -14.83 9.58 84.03 0.81 -14.02 16 19 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 20 C -0.05 -2.71 4.92 84.86 0.42 -2.30 16 21 N -0.93 -56.60 11.20 21.65 0.24 -56.36 16 22 Si 0.96 45.58 29.59 68.60 2.03 47.61 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 26 C 0.19 9.54 4.34 86.36 0.37 9.91 16 27 C 0.03 0.67 11.95 67.32 0.80 1.47 16 28 O -0.19 -4.66 10.73 0.36 0.00 -4.66 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.41 15.50 8.15 -92.71 -0.76 14.74 16 35 H 0.09 2.01 6.40 -2.39 -0.02 2.00 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 2.18 6.36 -2.39 -0.02 2.16 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 42 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 43 H 0.05 2.16 7.93 -2.38 -0.02 2.14 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H -0.02 -1.31 8.14 -2.38 -0.02 -1.33 16 46 H 0.06 3.26 5.57 -2.39 -0.01 3.25 16 47 H 0.26 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -74.21 380.28 1.66 -72.54 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.21 Total: 28.18 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 6.57 Total: 16.48 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -7.08 Total: -136.97 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.06 Total: -27.85 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -74.21 1.66 -72.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025389658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.910 kcal (2) G-P(sol) polarization free energy of solvation -74.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds