Wall clock time and date at job start Tue Mar 31 2020 13:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.47080 * 2 1 4 4 N 1.33693 * 126.27079 * 270.02325 * 3 2 1 5 5 C 1.30623 * 108.99606 * 179.97438 * 4 3 2 6 6 O 1.33656 * 109.15270 * 359.75016 * 5 4 3 7 7 C 1.35351 * 107.68800 * 0.40262 * 6 5 4 8 8 C 1.46716 * 126.64607 * 179.87504 * 7 6 5 9 9 O 1.21690 * 120.00040 * 179.68300 * 8 7 6 10 10 N 1.34776 * 120.00224 * 359.68389 * 8 7 6 11 11 C 1.46501 * 120.00249 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46676 * 325.00306 * 11 10 8 13 13 C 1.53000 * 109.46858 * 84.99666 * 11 10 8 14 14 C 1.52992 * 109.47190 * 205.00206 * 11 10 8 15 15 H 1.09006 * 109.50035 * 60.06139 * 14 11 10 16 16 C 1.53040 * 109.52580 * 180.14492 * 14 11 10 17 17 C 1.53039 * 109.54198 * 181.32921 * 16 14 11 18 18 C 1.53622 * 109.24473 * 298.51455 * 17 16 14 19 19 N 1.46924 * 108.54399 * 54.84806 * 18 17 16 20 20 C 1.36946 * 120.62919 * 126.37114 * 19 18 17 21 21 H 1.08001 * 119.99879 * 207.53220 * 20 19 18 22 22 C 1.38814 * 119.99719 * 27.52961 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46928 * 118.74378 * 306.10142 * 19 18 17 29 29 H 1.09005 * 109.46837 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47012 * 300.00198 * 1 2 3 31 31 H 1.08996 * 109.47417 * 60.00220 * 1 2 3 32 32 H 1.08997 * 109.46925 * 239.99255 * 2 1 3 33 33 H 1.09003 * 109.47224 * 120.00131 * 2 1 3 34 34 H 1.08003 * 125.42258 * 180.02562 * 5 4 3 35 35 H 0.97001 * 119.99869 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.46590 * 60.00835 * 13 11 10 37 37 H 1.09006 * 109.46656 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47590 * 300.00087 * 13 11 10 39 39 H 1.08999 * 109.46221 * 301.35296 * 16 14 11 40 40 H 1.09003 * 109.45556 * 61.30999 * 16 14 11 41 41 H 1.09004 * 109.49499 * 58.58593 * 17 16 14 42 42 H 1.08994 * 109.49949 * 178.64805 * 17 16 14 43 43 H 1.09007 * 109.73672 * 295.11836 * 18 17 16 44 44 H 1.08997 * 109.67035 * 174.54572 * 18 17 16 45 45 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 46 46 H 1.08992 * 109.58848 * 173.64203 * 28 19 18 47 47 H 1.08997 * 109.58525 * 294.06878 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2955 2.1666 -1.0779 5 6 2.7109 3.3427 -0.6900 6 8 2.7205 3.3858 0.6458 7 6 2.3011 2.1814 1.0992 8 6 2.1573 1.7752 2.5016 9 8 1.7620 0.6569 2.7737 10 7 2.4631 2.6405 3.4886 11 6 2.3201 2.2347 4.8890 12 1 1.4608 1.5715 4.9891 13 6 3.5853 1.5016 5.3392 14 6 2.1116 3.4747 5.7606 15 1 1.2096 3.9967 5.4408 16 6 1.9656 3.0525 7.2243 17 6 1.7240 4.2895 8.0923 18 6 2.9324 5.2313 7.9793 19 7 3.1632 5.5269 6.5587 20 6 3.2374 6.8216 6.1186 21 1 2.9646 7.0627 5.1018 22 6 3.6630 7.8239 6.9794 23 7 4.4519 7.5310 7.9915 24 14 3.1227 9.5896 6.6968 25 1 1.6411 9.6696 6.7578 26 1 3.7096 10.4608 7.7464 27 1 3.5883 10.0420 5.3612 28 6 3.3189 4.4072 5.6202 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 2.9965 4.1529 -1.3445 35 1 2.7778 3.5320 3.2717 36 1 4.4445 2.1649 5.2391 37 1 3.4790 1.2001 6.3814 38 1 3.7338 0.6182 4.7184 39 1 1.1220 2.3693 7.3228 40 1 2.8776 2.5525 7.5506 41 1 0.8257 4.8038 7.7506 42 1 1.5962 3.9857 9.1312 43 1 3.8150 4.7497 8.4003 44 1 2.7274 6.1572 8.5166 45 1 4.7833 6.6262 8.1021 46 1 3.3689 4.7892 4.6007 47 1 4.2323 3.8599 5.8528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025527862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:43 Heat of formation + Delta-G solvation = -8.923650 kcal Electronic energy + Delta-G solvation = -27992.952507 eV Core-core repulsion = 24177.482528 eV Total energy + Delta-G solvation = -3815.469979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.66622 -39.97227 -38.22374 -36.08409 -35.31763 -33.31025 -33.12763 -31.35180 -30.45218 -29.66023 -28.18320 -25.28657 -25.05758 -24.00658 -23.53885 -22.38176 -21.57576 -20.64563 -20.36301 -18.86780 -18.24383 -17.38537 -17.08170 -16.69392 -16.10108 -15.15219 -14.98417 -14.74629 -14.47468 -14.32472 -14.11738 -13.82987 -13.63278 -13.58074 -13.39905 -12.90819 -12.88855 -12.63835 -12.25234 -12.08191 -11.75284 -11.69273 -11.35023 -11.25748 -11.10068 -11.08106 -10.89062 -10.63118 -10.46112 -10.28495 -10.17885 -10.08281 -9.94542 -9.84823 -9.33460 -9.29467 -8.99698 -8.39401 -6.91312 -6.13629 -3.27186 0.62264 2.19960 2.26812 2.94686 3.10253 3.45590 3.49417 3.67225 3.77952 4.43990 4.52069 4.57088 4.87416 5.06178 5.09922 5.14244 5.20763 5.25452 5.30091 5.31297 5.42046 5.49508 5.54759 5.55404 5.69660 5.75328 5.82942 5.87779 5.97045 5.99058 6.04950 6.07161 6.10404 6.17129 6.30798 6.42662 6.45254 6.46830 6.60896 6.65691 6.77559 7.06118 7.16553 7.20620 7.44074 7.94334 7.95439 8.52956 9.06643 9.80010 10.24797 11.16675 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.003361 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.693913 B = 8328.532529 C = 9648.661890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.079 3.921 4 N -0.494 5.494 5 C 0.201 3.799 6 O -0.188 6.188 7 C -0.111 4.111 8 C 0.607 3.393 9 O -0.518 6.518 10 N -0.707 5.707 11 C 0.150 3.850 12 H 0.087 0.913 13 C -0.166 4.166 14 C -0.113 4.113 15 H 0.074 0.926 16 C -0.101 4.101 17 C -0.137 4.137 18 C 0.149 3.851 19 N -0.598 5.598 20 C -0.354 4.354 21 H 0.055 0.945 22 C -0.022 4.022 23 N -0.914 5.914 24 Si 1.064 2.936 25 H -0.293 1.293 26 H -0.285 1.285 27 H -0.293 1.293 28 C 0.153 3.847 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.257 0.743 35 H 0.407 0.593 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.017 0.983 44 H 0.078 0.922 45 H 0.269 0.731 46 H 0.048 0.952 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 -12.394 -12.471 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.045 4.045 4 N -0.223 5.223 5 C -0.024 4.024 6 O -0.073 6.073 7 C -0.166 4.166 8 C 0.392 3.608 9 O -0.396 6.396 10 N -0.357 5.357 11 C 0.046 3.954 12 H 0.105 0.895 13 C -0.224 4.224 14 C -0.134 4.134 15 H 0.092 0.908 16 C -0.139 4.139 17 C -0.176 4.176 18 C 0.023 3.977 19 N -0.321 5.321 20 C -0.483 4.483 21 H 0.073 0.927 22 C -0.225 4.225 23 N -0.553 5.553 24 Si 0.894 3.106 25 H -0.221 1.221 26 H -0.211 1.211 27 H -0.220 1.220 28 C 0.027 3.973 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.272 0.728 35 H 0.244 0.756 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.073 -11.701 -12.226 17.667 hybrid contribution 0.247 -0.624 -0.364 0.763 sum -4.826 -12.324 -12.591 18.267 Atomic orbital electron populations 1.21635 0.93806 1.02243 1.02036 1.20152 0.96651 0.87755 1.04335 1.22052 0.97820 0.98232 0.86351 1.70345 1.17161 1.03329 1.31434 1.28362 0.97014 0.97534 0.79469 1.84536 1.64595 1.33746 1.24450 1.23035 1.11988 0.85143 0.96472 1.16330 0.78107 0.84985 0.81350 1.90841 1.47366 1.19527 1.81863 1.46163 1.66127 1.17035 1.06397 1.21122 0.98964 0.96835 0.78521 0.89522 1.22273 0.98005 1.00348 1.01769 1.21955 1.01766 0.94787 0.94921 0.90803 1.21431 1.00786 0.97654 0.93992 1.22132 1.00965 0.96685 0.97848 1.21056 0.92830 0.97547 0.86227 1.44089 1.83484 1.01603 1.02923 1.19938 1.44217 0.83982 1.00135 0.92741 1.25835 0.95756 1.03839 0.97042 1.70791 1.27880 1.22835 1.33836 0.83532 0.75925 0.75628 0.75533 1.22052 1.21069 1.21991 1.20953 0.93325 0.89012 0.94024 0.91695 0.92335 0.92758 0.90151 0.88163 0.72789 0.75608 0.91664 0.91072 0.92615 0.93131 0.92082 0.92393 0.92945 0.96528 0.90351 0.91984 0.93346 0.95899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.05 -0.56 5.92 -27.89 -0.17 -0.72 16 3 C 0.08 1.00 6.41 -82.47 -0.53 0.47 16 4 N -0.49 -5.80 11.26 -10.89 -0.12 -5.92 16 5 C 0.20 1.86 13.21 52.25 0.69 2.55 16 6 O -0.19 -2.20 10.57 4.42 0.05 -2.16 16 7 C -0.11 -1.46 7.18 -36.84 -0.26 -1.72 16 8 C 0.61 8.58 7.75 -12.84 -0.10 8.49 16 9 O -0.52 -8.04 14.46 5.20 0.08 -7.96 16 10 N -0.71 -9.69 4.99 -55.10 -0.28 -9.96 16 11 C 0.15 2.09 2.41 -67.93 -0.16 1.92 16 12 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 13 C -0.17 -2.19 8.79 37.16 0.33 -1.87 16 14 C -0.11 -1.82 2.33 -90.50 -0.21 -2.03 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.10 -1.56 4.77 -26.69 -0.13 -1.69 16 17 C -0.14 -2.47 6.10 -26.39 -0.16 -2.63 16 18 C 0.15 3.37 4.72 -3.49 -0.02 3.35 16 19 N -0.60 -14.29 2.85 -172.05 -0.49 -14.78 16 20 C -0.35 -9.56 9.49 -15.05 -0.14 -9.70 16 21 H 0.05 1.48 7.95 -52.49 -0.42 1.06 16 22 C -0.02 -0.62 4.66 -17.43 -0.08 -0.70 16 23 N -0.91 -26.79 12.46 55.49 0.69 -26.10 16 24 Si 1.06 24.71 29.99 -169.99 -5.10 19.61 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.15 2.97 5.29 -3.71 -0.02 2.96 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.17 6.47 -51.93 -0.34 0.84 16 34 H 0.26 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.41 5.53 6.76 -40.82 -0.28 5.26 16 36 H 0.06 0.91 6.32 -51.93 -0.33 0.58 16 37 H 0.07 0.88 6.46 -51.93 -0.34 0.54 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.92 6.50 -51.93 -0.34 0.59 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 44 H 0.08 2.00 6.31 -51.93 -0.33 1.68 16 45 H 0.27 7.94 6.69 -40.82 -0.27 7.66 16 46 H 0.05 0.93 6.52 -51.93 -0.34 0.59 16 47 H 0.02 0.45 6.18 -51.93 -0.32 0.13 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -31.78 369.76 -7.31 -39.09 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.12 Total: 4.97 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.60 Total: -2.36 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.20 Total: -56.76 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.12 Total: -10.12 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.10 Total: 19.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.78 -7.31 -39.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025527862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.170 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds