Wall clock time and date at job start Tue Mar 31 2020 13:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.47080 * 2 1 4 4 N 1.33693 * 126.27079 * 270.02325 * 3 2 1 5 5 C 1.30623 * 108.99606 * 179.97438 * 4 3 2 6 6 O 1.33656 * 109.15270 * 359.75016 * 5 4 3 7 7 C 1.35351 * 107.68800 * 0.40262 * 6 5 4 8 8 C 1.46716 * 126.64607 * 179.87504 * 7 6 5 9 9 O 1.21690 * 120.00040 * 179.68300 * 8 7 6 10 10 N 1.34776 * 120.00224 * 359.68389 * 8 7 6 11 11 C 1.46501 * 120.00249 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46676 * 325.00306 * 11 10 8 13 13 C 1.53000 * 109.46858 * 84.99666 * 11 10 8 14 14 C 1.52992 * 109.47190 * 205.00206 * 11 10 8 15 15 H 1.09006 * 109.50035 * 60.06139 * 14 11 10 16 16 C 1.53040 * 109.52580 * 180.14492 * 14 11 10 17 17 C 1.53039 * 109.54198 * 181.32921 * 16 14 11 18 18 C 1.53622 * 109.24473 * 298.51455 * 17 16 14 19 19 N 1.46924 * 108.54399 * 54.84806 * 18 17 16 20 20 C 1.36946 * 120.62919 * 126.37114 * 19 18 17 21 21 H 1.08001 * 119.99879 * 207.53220 * 20 19 18 22 22 C 1.38814 * 119.99719 * 27.52961 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46928 * 118.74378 * 306.10142 * 19 18 17 29 29 H 1.09005 * 109.46837 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47012 * 300.00198 * 1 2 3 31 31 H 1.08996 * 109.47417 * 60.00220 * 1 2 3 32 32 H 1.08997 * 109.46925 * 239.99255 * 2 1 3 33 33 H 1.09003 * 109.47224 * 120.00131 * 2 1 3 34 34 H 1.08003 * 125.42258 * 180.02562 * 5 4 3 35 35 H 0.97001 * 119.99869 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.46590 * 60.00835 * 13 11 10 37 37 H 1.09006 * 109.46656 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47590 * 300.00087 * 13 11 10 39 39 H 1.08999 * 109.46221 * 301.35296 * 16 14 11 40 40 H 1.09003 * 109.45556 * 61.30999 * 16 14 11 41 41 H 1.09004 * 109.49499 * 58.58593 * 17 16 14 42 42 H 1.08994 * 109.49949 * 178.64805 * 17 16 14 43 43 H 1.09007 * 109.73672 * 295.11836 * 18 17 16 44 44 H 1.08997 * 109.67035 * 174.54572 * 18 17 16 45 45 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 46 46 H 1.08992 * 109.58848 * 173.64203 * 28 19 18 47 47 H 1.08997 * 109.58525 * 294.06878 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2955 2.1666 -1.0779 5 6 2.7109 3.3427 -0.6900 6 8 2.7205 3.3858 0.6458 7 6 2.3011 2.1814 1.0992 8 6 2.1573 1.7752 2.5016 9 8 1.7620 0.6569 2.7737 10 7 2.4631 2.6405 3.4886 11 6 2.3201 2.2347 4.8890 12 1 1.4608 1.5715 4.9891 13 6 3.5853 1.5016 5.3392 14 6 2.1116 3.4747 5.7606 15 1 1.2096 3.9967 5.4408 16 6 1.9656 3.0525 7.2243 17 6 1.7240 4.2895 8.0923 18 6 2.9324 5.2313 7.9793 19 7 3.1632 5.5269 6.5587 20 6 3.2374 6.8216 6.1186 21 1 2.9646 7.0627 5.1018 22 6 3.6630 7.8239 6.9794 23 7 4.4519 7.5310 7.9915 24 14 3.1227 9.5896 6.6968 25 1 1.6411 9.6696 6.7578 26 1 3.7096 10.4608 7.7464 27 1 3.5883 10.0420 5.3612 28 6 3.3189 4.4072 5.6202 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 2.9965 4.1529 -1.3445 35 1 2.7778 3.5320 3.2717 36 1 4.4445 2.1649 5.2391 37 1 3.4790 1.2001 6.3814 38 1 3.7338 0.6182 4.7184 39 1 1.1220 2.3693 7.3228 40 1 2.8776 2.5525 7.5506 41 1 0.8257 4.8038 7.7506 42 1 1.5962 3.9857 9.1312 43 1 3.8150 4.7497 8.4003 44 1 2.7274 6.1572 8.5166 45 1 4.7833 6.6262 8.1021 46 1 3.3689 4.7892 4.6007 47 1 4.2323 3.8599 5.8528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025527862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:42 Heat of formation + Delta-G solvation = -30.931298 kcal Electronic energy + Delta-G solvation = -27993.906830 eV Core-core repulsion = 24177.482528 eV Total energy + Delta-G solvation = -3816.424302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.53014 -41.13572 -39.63520 -37.19285 -36.56961 -34.86021 -34.00821 -32.68247 -32.24093 -30.66294 -29.49568 -27.07494 -26.17969 -25.05483 -24.54905 -23.96344 -22.74962 -21.83857 -21.51135 -20.28398 -19.46755 -19.13830 -17.98126 -17.55098 -17.23978 -16.39017 -16.29235 -15.90830 -15.83670 -15.64503 -15.45166 -15.28322 -14.97782 -14.96595 -14.43339 -14.40368 -13.93398 -13.75267 -13.70830 -13.58852 -12.94556 -12.77437 -12.62645 -12.54427 -12.22344 -12.13649 -12.11740 -12.00258 -11.92544 -11.89581 -11.75211 -11.62462 -11.44073 -11.16704 -11.07941 -10.43212 -10.38578 -9.97897 -8.89648 -8.26175 -5.38355 -0.28787 1.35426 1.39698 1.57865 1.65029 1.83724 1.91361 2.08697 2.64974 3.06494 3.21261 3.43337 3.57991 3.64221 3.82545 3.86036 3.94396 4.22702 4.23343 4.29369 4.32162 4.33863 4.37626 4.45149 4.51894 4.55337 4.71270 4.72188 4.76853 4.86360 4.91764 4.96940 5.01642 5.06295 5.09646 5.15123 5.18301 5.22612 5.26208 5.30239 5.35328 5.39513 5.56138 5.83989 6.19637 6.40030 6.50160 6.87123 7.07044 7.78899 8.23815 9.00625 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.003361 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.693913 B = 8328.532529 C = 9648.661890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.052 4.052 3 C 0.080 3.920 4 N -0.519 5.519 5 C 0.225 3.775 6 O -0.197 6.197 7 C -0.140 4.140 8 C 0.609 3.391 9 O -0.536 6.536 10 N -0.707 5.707 11 C 0.159 3.841 12 H 0.092 0.908 13 C -0.160 4.160 14 C -0.098 4.098 15 H 0.062 0.938 16 C -0.097 4.097 17 C -0.127 4.127 18 C 0.152 3.848 19 N -0.617 5.617 20 C -0.357 4.357 21 H 0.050 0.950 22 C -0.074 4.074 23 N -0.942 5.942 24 Si 1.112 2.888 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.275 1.275 28 C 0.153 3.847 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.306 0.694 35 H 0.407 0.593 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.006 0.994 44 H 0.040 0.960 45 H 0.255 0.745 46 H 0.045 0.955 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 -13.096 -13.938 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C -0.044 4.044 4 N -0.248 5.248 5 C 0.001 3.999 6 O -0.084 6.084 7 C -0.195 4.195 8 C 0.395 3.605 9 O -0.416 6.416 10 N -0.357 5.357 11 C 0.055 3.945 12 H 0.110 0.890 13 C -0.218 4.218 14 C -0.119 4.119 15 H 0.081 0.919 16 C -0.135 4.135 17 C -0.166 4.166 18 C 0.027 3.973 19 N -0.341 5.341 20 C -0.487 4.487 21 H 0.068 0.932 22 C -0.271 4.271 23 N -0.584 5.584 24 Si 0.937 3.063 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.201 1.201 28 C 0.028 3.972 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.321 0.679 35 H 0.244 0.756 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.024 0.976 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.987 -12.442 -13.718 19.464 hybrid contribution 0.563 -0.412 -0.023 0.698 sum -5.424 -12.855 -13.741 19.583 Atomic orbital electron populations 1.21587 0.93089 1.03198 1.01222 1.20204 0.97203 0.87157 1.04439 1.22349 0.96772 0.98760 0.86497 1.70388 1.18738 1.04378 1.31285 1.29579 0.93674 0.97773 0.78919 1.84538 1.64930 1.33268 1.25633 1.22817 1.14447 0.86108 0.96126 1.16417 0.77573 0.84687 0.81830 1.90819 1.48252 1.20160 1.82361 1.46133 1.66210 1.17040 1.06338 1.20996 0.99591 0.95632 0.78316 0.88989 1.22223 0.97050 0.99981 1.02548 1.21732 0.99302 0.94744 0.96080 0.91929 1.21437 1.02522 0.96875 0.92657 1.21999 0.98023 0.96603 0.99965 1.20946 0.94380 0.96796 0.85194 1.44333 1.83922 1.01839 1.04009 1.20195 1.42819 0.85687 0.99976 0.93183 1.27110 0.95638 1.07422 0.96886 1.70906 1.30067 1.22008 1.35398 0.82886 0.76067 0.71460 0.75903 1.20773 1.21927 1.20087 1.21063 0.94945 0.88326 0.92863 0.89907 0.94035 0.92533 0.88832 0.89169 0.67941 0.75639 0.92646 0.89826 0.92489 0.90025 0.91245 0.93236 0.90638 0.97604 0.94102 0.93524 0.93660 0.95847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.05 -1.09 5.92 29.85 0.18 -0.92 16 3 C 0.08 1.93 6.41 41.83 0.27 2.19 16 4 N -0.52 -11.24 11.26 -303.13 -3.41 -14.65 16 5 C 0.22 3.60 13.21 130.42 1.72 5.32 16 6 O -0.20 -4.35 10.57 -7.09 -0.07 -4.43 16 7 C -0.14 -3.58 7.18 24.04 0.17 -3.41 16 8 C 0.61 16.90 7.75 86.46 0.67 17.57 16 9 O -0.54 -16.36 14.46 -4.32 -0.06 -16.43 16 10 N -0.71 -18.89 4.99 -446.47 -2.23 -21.12 16 11 C 0.16 4.19 2.41 44.99 0.11 4.30 16 12 H 0.09 2.42 7.58 -2.38 -0.02 2.40 16 13 C -0.16 -3.97 8.79 71.98 0.63 -3.34 16 14 C -0.10 -3.02 2.33 -10.72 -0.02 -3.04 16 15 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 16 C -0.10 -2.79 4.77 30.62 0.15 -2.65 16 17 C -0.13 -4.43 6.10 30.82 0.19 -4.24 16 18 C 0.15 7.00 4.72 86.51 0.41 7.40 16 19 N -0.62 -29.88 2.85 -698.25 -1.99 -31.87 16 20 C -0.36 -19.56 9.49 84.03 0.80 -18.76 16 21 H 0.05 2.73 7.95 -2.91 -0.02 2.71 16 22 C -0.07 -4.15 4.66 84.86 0.40 -3.75 16 23 N -0.94 -56.81 12.46 21.65 0.27 -56.54 16 24 Si 1.11 50.25 29.99 68.60 2.06 52.31 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 27 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 28 C 0.15 5.92 5.29 86.36 0.46 6.38 16 29 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 2.07 6.47 -2.39 -0.02 2.06 16 34 H 0.31 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.41 10.91 6.76 -92.71 -0.63 10.28 16 36 H 0.05 1.48 6.32 -2.39 -0.02 1.47 16 37 H 0.08 1.86 6.46 -2.38 -0.02 1.85 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 1.92 6.50 -2.39 -0.02 1.90 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.01 0.28 7.87 -2.38 -0.02 0.26 16 44 H 0.04 2.16 6.31 -2.39 -0.02 2.14 16 45 H 0.25 15.62 6.69 -92.71 -0.62 15.00 16 46 H 0.04 1.74 6.52 -2.39 -0.02 1.73 16 47 H 0.02 0.92 6.18 -2.39 -0.01 0.90 16 Total: -1.00 -70.42 369.76 1.90 -68.52 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.51 Total: 22.96 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.83 Total: 1.24 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -7.36 Total: -124.18 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.14 Total: -20.85 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.06 Total: 52.31 kcal Total: -70.42 1.90 -68.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025527862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.592 kcal (2) G-P(sol) polarization free energy of solvation -70.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds