Wall clock time and date at job start Tue Mar 31 2020 13:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47347 * 2 1 4 4 N 1.33701 * 126.27229 * 270.13547 * 3 2 1 5 5 C 1.30618 * 108.99180 * 180.25400 * 4 3 2 6 6 O 1.33665 * 109.15833 * 359.76821 * 5 4 3 7 7 C 1.35341 * 107.68236 * 359.97438 * 6 5 4 8 8 C 1.46722 * 126.64283 * 179.97438 * 7 6 5 9 9 O 1.21681 * 120.00182 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99826 * 0.03146 * 8 7 6 11 11 C 1.46504 * 119.99736 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46997 * 35.00043 * 11 10 8 13 13 C 1.52999 * 109.47203 * 274.99978 * 11 10 8 14 14 C 1.53009 * 109.46873 * 155.00062 * 11 10 8 15 15 H 1.09000 * 109.49392 * 304.93271 * 14 11 10 16 16 C 1.53045 * 109.49301 * 184.83719 * 14 11 10 17 17 C 1.53043 * 109.53148 * 178.68267 * 16 14 11 18 18 C 1.53183 * 109.31287 * 61.36608 * 17 16 14 19 19 N 1.46920 * 108.78129 * 305.36158 * 18 17 16 20 20 C 1.36934 * 120.63450 * 233.58997 * 19 18 17 21 21 H 1.08000 * 120.00067 * 151.84388 * 20 19 18 22 22 C 1.38815 * 119.99872 * 331.84502 * 20 19 18 23 23 N 1.31617 * 119.99760 * 343.06514 * 22 20 19 24 24 Si 1.86807 * 119.99693 * 163.06103 * 22 20 19 25 25 H 1.48499 * 109.47309 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46592 * 120.00037 * 24 22 20 27 27 H 1.48494 * 109.46889 * 239.99884 * 24 22 20 28 28 C 1.46931 * 118.73492 * 53.60706 * 19 18 17 29 29 H 1.09000 * 109.47329 * 300.00376 * 1 2 3 30 30 H 1.09005 * 109.46844 * 59.99969 * 1 2 3 31 31 H 1.09000 * 109.47226 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47329 * 239.99624 * 2 1 3 33 33 H 1.09009 * 109.47215 * 119.99691 * 2 1 3 34 34 H 1.08004 * 125.41915 * 179.75142 * 5 4 3 35 35 H 0.96995 * 120.00122 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.46902 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47112 * 60.00242 * 13 11 10 38 38 H 1.09000 * 109.46847 * 300.00342 * 13 11 10 39 39 H 1.08996 * 109.46071 * 298.70071 * 16 14 11 40 40 H 1.09001 * 109.45682 * 58.66554 * 16 14 11 41 41 H 1.08997 * 109.50093 * 301.40869 * 17 16 14 42 42 H 1.09001 * 109.51951 * 181.33255 * 17 16 14 43 43 H 1.09010 * 109.58772 * 185.57133 * 18 17 16 44 44 H 1.09000 * 109.70401 * 65.22111 * 18 17 16 45 45 H 0.97005 * 119.99660 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.58576 * 186.61216 * 28 19 18 47 47 H 1.08991 * 109.58952 * 66.18438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2936 2.1674 -1.0779 5 6 2.7154 3.3411 -0.6899 6 8 2.7316 3.3818 0.6460 7 6 2.3007 2.1816 1.0991 8 6 2.1569 1.7753 2.5016 9 8 1.7563 0.6590 2.7737 10 7 2.4683 2.6386 3.4886 11 6 2.3241 2.2331 4.8890 12 1 2.5707 1.1761 4.9884 13 6 0.8810 2.4650 5.3411 14 6 3.2708 3.0617 5.7599 15 1 4.2892 2.9656 5.3834 16 6 3.2094 2.5575 7.2036 17 6 4.1803 3.3642 8.0690 18 6 3.7669 4.8391 8.0539 19 7 3.6826 5.2925 6.6590 20 6 4.3695 6.4017 6.2431 21 1 4.6868 6.4862 5.2143 22 6 4.6578 7.4177 7.1440 23 7 4.0070 7.4891 8.2858 24 14 5.9697 8.6834 6.7358 25 1 6.5487 8.3837 5.4016 26 1 5.3618 10.0382 6.7180 27 1 7.0409 8.6350 7.7630 28 6 2.8470 4.5333 5.7187 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0052 4.1499 -1.3444 35 1 2.7878 3.5284 3.2717 36 1 0.7739 2.1637 6.3831 37 1 0.2066 1.8747 4.7207 38 1 0.6345 3.5220 5.2416 39 1 2.1961 2.6767 7.5871 40 1 3.4868 1.5038 7.2323 41 1 5.1904 3.2653 7.6714 42 1 4.1539 2.9893 9.0921 43 1 4.5102 5.4324 8.5867 44 1 2.7953 4.9534 8.5346 45 1 4.2083 8.1993 8.9152 46 1 2.9833 4.9246 4.7106 47 1 1.7998 4.6202 6.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025527863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:47 Heat of formation + Delta-G solvation = -6.782650 kcal Electronic energy + Delta-G solvation = -27924.675467 eV Core-core repulsion = 24109.298329 eV Total energy + Delta-G solvation = -3815.377138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.64761 -39.91221 -38.09469 -36.03478 -35.15966 -33.19150 -33.04258 -31.32869 -30.49382 -29.64172 -28.11512 -25.34820 -25.15299 -23.96422 -23.46860 -22.26793 -21.58903 -20.64558 -20.29458 -18.83544 -18.16321 -17.06738 -16.83437 -16.58531 -16.01326 -15.13843 -14.92934 -14.88834 -14.50134 -14.34951 -14.06809 -13.84972 -13.57150 -13.48936 -13.13343 -12.89781 -12.59520 -12.42216 -12.31495 -11.86467 -11.73271 -11.69381 -11.33350 -11.24153 -11.06639 -11.02607 -10.96854 -10.63324 -10.51021 -10.26416 -10.20781 -10.07475 -9.91044 -9.66731 -9.43373 -9.28863 -8.95220 -8.50424 -6.70257 -5.83160 -3.26059 0.64463 2.21766 2.28835 2.97842 3.14075 3.33318 3.41554 3.43149 3.79612 4.44134 4.45989 4.58743 4.95494 5.11210 5.15923 5.16713 5.22763 5.32213 5.34720 5.36746 5.50362 5.53711 5.63564 5.65893 5.76704 5.80198 5.88336 5.95025 6.00841 6.06491 6.12305 6.17374 6.20215 6.28169 6.42755 6.51754 6.55675 6.66432 6.73206 6.82739 6.93256 7.23284 7.36643 7.47420 7.64026 7.75118 7.98928 8.40491 9.16829 9.80186 10.36874 11.25027 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.003311 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.285749 B = 8454.511121 C = 9849.414024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 C 0.079 3.921 4 N -0.494 5.494 5 C 0.200 3.800 6 O -0.188 6.188 7 C -0.110 4.110 8 C 0.607 3.393 9 O -0.518 6.518 10 N -0.706 5.706 11 C 0.149 3.851 12 H 0.086 0.914 13 C -0.166 4.166 14 C -0.114 4.114 15 H 0.073 0.927 16 C -0.100 4.100 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.254 4.254 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.151 3.849 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.256 0.744 35 H 0.407 0.593 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.018 0.982 45 H 0.253 0.747 46 H 0.046 0.954 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 -11.840 -12.892 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.045 4.045 4 N -0.223 5.223 5 C -0.025 4.025 6 O -0.073 6.073 7 C -0.165 4.165 8 C 0.392 3.608 9 O -0.396 6.396 10 N -0.356 5.356 11 C 0.045 3.955 12 H 0.104 0.896 13 C -0.224 4.224 14 C -0.134 4.134 15 H 0.091 0.909 16 C -0.138 4.138 17 C -0.181 4.181 18 C 0.044 3.956 19 N -0.313 5.313 20 C -0.384 4.384 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.024 3.976 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.272 0.728 35 H 0.243 0.757 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.808 -12.589 -13.120 18.808 hybrid contribution 1.030 1.669 0.226 1.974 sum -3.778 -10.920 -12.894 17.314 Atomic orbital electron populations 1.21633 0.93819 1.02225 1.02023 1.20151 0.96651 0.87762 1.04323 1.22053 0.97950 0.98184 0.86361 1.70342 1.17167 1.03307 1.31458 1.28350 0.97058 0.97579 0.79488 1.84534 1.64253 1.34104 1.24423 1.23056 1.11689 0.85280 0.96510 1.16327 0.78250 0.84917 0.81326 1.90840 1.47138 1.19773 1.81845 1.46146 1.65775 1.17242 1.06448 1.21152 0.96156 0.99758 0.78411 0.89598 1.22270 0.95672 1.02705 1.01729 1.21974 0.98569 0.97877 0.95029 0.90889 1.21418 1.00167 0.97999 0.94206 1.22175 0.98681 0.99591 0.97698 1.20790 0.99565 0.89335 0.85946 1.44022 1.52546 1.28819 1.05918 1.19196 1.28214 0.94904 0.96057 0.91769 1.25039 0.99641 0.97076 0.97772 1.70044 1.40565 1.33608 1.10278 0.86253 0.81670 0.81212 0.77806 1.20274 1.21715 1.21541 1.20998 0.93842 0.88746 0.94021 0.92302 0.92792 0.91722 0.90178 0.88161 0.72825 0.75672 0.91100 0.92751 0.91476 0.92161 0.93453 0.92797 0.93161 0.89612 0.96402 0.93664 0.93517 0.95588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.89 37.15 0.37 -1.01 16 2 C -0.05 -0.56 5.92 -27.89 -0.17 -0.72 16 3 C 0.08 0.98 6.41 -82.46 -0.53 0.45 16 4 N -0.49 -5.75 11.26 -10.88 -0.12 -5.87 16 5 C 0.20 1.82 13.21 52.25 0.69 2.51 16 6 O -0.19 -2.16 10.57 4.43 0.05 -2.11 16 7 C -0.11 -1.43 7.18 -36.84 -0.26 -1.69 16 8 C 0.61 8.50 7.75 -12.83 -0.10 8.41 16 9 O -0.52 -8.02 14.46 5.21 0.08 -7.95 16 10 N -0.71 -9.54 5.01 -55.10 -0.28 -9.82 16 11 C 0.15 2.08 2.35 -67.92 -0.16 1.92 16 12 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 13 C -0.17 -2.22 8.76 37.16 0.33 -1.89 16 14 C -0.11 -1.82 2.27 -90.49 -0.21 -2.03 16 15 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.10 -1.58 4.89 -26.69 -0.13 -1.71 16 17 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 18 C 0.17 3.91 5.30 -3.72 -0.02 3.89 16 19 N -0.59 -14.15 2.99 -172.33 -0.52 -14.67 16 20 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 21 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 22 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 23 N -0.90 -25.60 11.20 55.49 0.62 -24.98 16 24 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.15 2.91 5.26 -3.71 -0.02 2.89 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.17 6.48 -51.92 -0.34 0.84 16 34 H 0.26 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.41 5.37 7.07 -40.82 -0.29 5.08 16 36 H 0.07 0.90 6.59 -51.93 -0.34 0.56 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.94 6.23 -51.93 -0.32 0.62 16 39 H 0.06 0.94 6.62 -51.93 -0.34 0.59 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 2.24 6.06 -51.92 -0.31 1.92 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.05 0.88 6.75 -51.93 -0.35 0.53 16 47 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -31.06 371.28 -7.41 -38.47 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.21 Total: 3.78 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.60 Total: 1.36 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.29 Total: -55.34 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.12 Total: -10.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.06 -7.41 -38.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025527863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.690 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds