Wall clock time and date at job start Tue Mar 31 2020 13:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47347 * 2 1 4 4 N 1.33701 * 126.27229 * 270.13547 * 3 2 1 5 5 C 1.30618 * 108.99180 * 180.25400 * 4 3 2 6 6 O 1.33665 * 109.15833 * 359.76821 * 5 4 3 7 7 C 1.35341 * 107.68236 * 359.97438 * 6 5 4 8 8 C 1.46722 * 126.64283 * 179.97438 * 7 6 5 9 9 O 1.21681 * 120.00182 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99826 * 0.03146 * 8 7 6 11 11 C 1.46504 * 119.99736 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46997 * 35.00043 * 11 10 8 13 13 C 1.52999 * 109.47203 * 274.99978 * 11 10 8 14 14 C 1.53009 * 109.46873 * 155.00062 * 11 10 8 15 15 H 1.09000 * 109.49392 * 304.93271 * 14 11 10 16 16 C 1.53045 * 109.49301 * 184.83719 * 14 11 10 17 17 C 1.53043 * 109.53148 * 178.68267 * 16 14 11 18 18 C 1.53183 * 109.31287 * 61.36608 * 17 16 14 19 19 N 1.46920 * 108.78129 * 305.36158 * 18 17 16 20 20 C 1.36934 * 120.63450 * 233.58997 * 19 18 17 21 21 H 1.08000 * 120.00067 * 151.84388 * 20 19 18 22 22 C 1.38815 * 119.99872 * 331.84502 * 20 19 18 23 23 N 1.31617 * 119.99760 * 343.06514 * 22 20 19 24 24 Si 1.86807 * 119.99693 * 163.06103 * 22 20 19 25 25 H 1.48499 * 109.47309 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46592 * 120.00037 * 24 22 20 27 27 H 1.48494 * 109.46889 * 239.99884 * 24 22 20 28 28 C 1.46931 * 118.73492 * 53.60706 * 19 18 17 29 29 H 1.09000 * 109.47329 * 300.00376 * 1 2 3 30 30 H 1.09005 * 109.46844 * 59.99969 * 1 2 3 31 31 H 1.09000 * 109.47226 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47329 * 239.99624 * 2 1 3 33 33 H 1.09009 * 109.47215 * 119.99691 * 2 1 3 34 34 H 1.08004 * 125.41915 * 179.75142 * 5 4 3 35 35 H 0.96995 * 120.00122 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.46902 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47112 * 60.00242 * 13 11 10 38 38 H 1.09000 * 109.46847 * 300.00342 * 13 11 10 39 39 H 1.08996 * 109.46071 * 298.70071 * 16 14 11 40 40 H 1.09001 * 109.45682 * 58.66554 * 16 14 11 41 41 H 1.08997 * 109.50093 * 301.40869 * 17 16 14 42 42 H 1.09001 * 109.51951 * 181.33255 * 17 16 14 43 43 H 1.09010 * 109.58772 * 185.57133 * 18 17 16 44 44 H 1.09000 * 109.70401 * 65.22111 * 18 17 16 45 45 H 0.97005 * 119.99660 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.58576 * 186.61216 * 28 19 18 47 47 H 1.08991 * 109.58952 * 66.18438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2936 2.1674 -1.0779 5 6 2.7154 3.3411 -0.6899 6 8 2.7316 3.3818 0.6460 7 6 2.3007 2.1816 1.0991 8 6 2.1569 1.7753 2.5016 9 8 1.7563 0.6590 2.7737 10 7 2.4683 2.6386 3.4886 11 6 2.3241 2.2331 4.8890 12 1 2.5707 1.1761 4.9884 13 6 0.8810 2.4650 5.3411 14 6 3.2708 3.0617 5.7599 15 1 4.2892 2.9656 5.3834 16 6 3.2094 2.5575 7.2036 17 6 4.1803 3.3642 8.0690 18 6 3.7669 4.8391 8.0539 19 7 3.6826 5.2925 6.6590 20 6 4.3695 6.4017 6.2431 21 1 4.6868 6.4862 5.2143 22 6 4.6578 7.4177 7.1440 23 7 4.0070 7.4891 8.2858 24 14 5.9697 8.6834 6.7358 25 1 6.5487 8.3837 5.4016 26 1 5.3618 10.0382 6.7180 27 1 7.0409 8.6350 7.7630 28 6 2.8470 4.5333 5.7187 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0052 4.1499 -1.3444 35 1 2.7878 3.5284 3.2717 36 1 0.7739 2.1637 6.3831 37 1 0.2066 1.8747 4.7207 38 1 0.6345 3.5220 5.2416 39 1 2.1961 2.6767 7.5871 40 1 3.4868 1.5038 7.2323 41 1 5.1904 3.2653 7.6714 42 1 4.1539 2.9893 9.0921 43 1 4.5102 5.4324 8.5867 44 1 2.7953 4.9534 8.5346 45 1 4.2083 8.1993 8.9152 46 1 2.9833 4.9246 4.7106 47 1 1.7998 4.6202 6.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025527863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:46 Heat of formation + Delta-G solvation = -28.153479 kcal Electronic energy + Delta-G solvation = -27925.602176 eV Core-core repulsion = 24109.298329 eV Total energy + Delta-G solvation = -3816.303847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.49570 -41.05901 -39.49395 -37.06483 -36.44277 -34.70322 -33.97903 -32.68607 -32.26619 -30.62960 -29.42500 -27.22608 -26.15384 -24.97779 -24.48526 -23.88327 -22.74067 -21.80859 -21.44560 -20.21315 -19.25402 -18.59749 -17.93562 -17.52620 -17.14031 -16.84663 -16.12425 -15.93428 -15.71742 -15.69244 -15.36688 -15.05148 -14.92238 -14.70683 -14.39223 -14.08553 -13.97057 -13.75595 -13.68661 -13.31804 -13.04531 -12.79752 -12.72622 -12.51727 -12.27145 -12.18773 -12.08164 -12.06472 -11.96178 -11.94523 -11.68503 -11.51803 -11.32929 -11.11575 -11.03700 -10.52763 -10.33495 -9.93345 -8.64756 -7.86487 -5.31668 -0.25082 1.38713 1.43142 1.45432 1.48027 1.57618 1.95706 2.13793 2.50939 3.09506 3.28292 3.54891 3.61323 3.69900 3.91529 3.98010 4.04305 4.27262 4.32224 4.35350 4.40060 4.40654 4.46316 4.48695 4.64652 4.69137 4.77450 4.84724 4.87293 4.95843 4.99427 5.04222 5.08755 5.14133 5.19602 5.21022 5.29767 5.31724 5.35282 5.41946 5.49110 5.58281 5.68477 5.80524 6.25217 6.40105 6.54065 6.92623 7.16095 7.87868 8.39173 9.19502 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.003311 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.285749 B = 8454.511121 C = 9849.414024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.052 4.052 3 C 0.078 3.922 4 N -0.520 5.520 5 C 0.224 3.776 6 O -0.196 6.196 7 C -0.138 4.138 8 C 0.608 3.392 9 O -0.537 6.537 10 N -0.705 5.705 11 C 0.159 3.841 12 H 0.091 0.909 13 C -0.160 4.160 14 C -0.098 4.098 15 H 0.065 0.935 16 C -0.097 4.097 17 C -0.131 4.131 18 C 0.174 3.826 19 N -0.609 5.609 20 C -0.260 4.260 21 H 0.067 0.933 22 C -0.050 4.050 23 N -0.934 5.934 24 Si 0.963 3.037 25 H -0.266 1.266 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.150 3.850 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.306 0.694 35 H 0.408 0.592 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.049 0.951 44 H -0.003 1.003 45 H 0.249 0.751 46 H 0.048 0.952 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 -12.768 -14.632 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C -0.045 4.045 4 N -0.249 5.249 5 C 0.000 4.000 6 O -0.082 6.082 7 C -0.193 4.193 8 C 0.395 3.605 9 O -0.417 6.417 10 N -0.355 5.355 11 C 0.055 3.945 12 H 0.109 0.891 13 C -0.218 4.218 14 C -0.119 4.119 15 H 0.083 0.917 16 C -0.134 4.134 17 C -0.170 4.170 18 C 0.048 3.952 19 N -0.332 5.332 20 C -0.391 4.391 21 H 0.084 0.916 22 C -0.245 4.245 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.190 1.190 26 H -0.220 1.220 27 H -0.219 1.219 28 C 0.025 3.975 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.320 0.680 35 H 0.245 0.755 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.015 0.985 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.581 -13.545 -14.888 20.643 hybrid contribution 0.933 1.982 0.661 2.289 sum -3.648 -11.563 -14.228 18.693 Atomic orbital electron populations 1.21583 0.93096 1.03150 1.01240 1.20198 0.97215 0.87217 1.04375 1.22339 0.96961 0.98698 0.86543 1.70385 1.18775 1.04387 1.31323 1.29566 0.93701 0.97774 0.78956 1.84536 1.64550 1.33569 1.25569 1.22819 1.14105 0.86261 0.96118 1.16412 0.77720 0.84587 0.81819 1.90819 1.48059 1.20463 1.82355 1.46097 1.65872 1.17279 1.06272 1.20998 0.95823 0.99363 0.78313 0.89113 1.22218 0.95195 1.02069 1.02331 1.21747 0.98521 0.95688 0.95915 0.91660 1.21414 0.99763 0.99126 0.93145 1.22010 0.98888 0.96499 0.99643 1.20618 0.97361 0.91929 0.85278 1.44284 1.53354 1.28833 1.06768 1.19530 1.27903 0.95494 0.96147 0.91564 1.25758 1.01669 0.99188 0.97923 1.70192 1.42161 1.34366 1.11275 0.85274 0.79083 0.78658 0.77843 1.18997 1.22023 1.21900 1.21115 0.93042 0.90322 0.93027 0.93951 0.92560 0.89996 0.88920 0.89208 0.67959 0.75535 0.90158 0.92620 0.92417 0.91589 0.90432 0.93343 0.91162 0.93252 0.98502 0.94210 0.93331 0.95777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.89 71.98 0.71 -1.78 16 2 C -0.05 -1.09 5.92 29.84 0.18 -0.91 16 3 C 0.08 1.86 6.41 41.83 0.27 2.13 16 4 N -0.52 -11.10 11.26 -303.12 -3.41 -14.51 16 5 C 0.22 3.48 13.21 130.42 1.72 5.20 16 6 O -0.20 -4.18 10.57 -7.06 -0.07 -4.25 16 7 C -0.14 -3.46 7.18 24.05 0.17 -3.29 16 8 C 0.61 16.63 7.75 86.46 0.67 17.30 16 9 O -0.54 -16.31 14.46 -4.29 -0.06 -16.38 16 10 N -0.71 -18.39 5.01 -446.45 -2.24 -20.63 16 11 C 0.16 4.19 2.35 44.99 0.11 4.29 16 12 H 0.09 2.39 7.58 -2.39 -0.02 2.37 16 13 C -0.16 -4.05 8.76 71.98 0.63 -3.42 16 14 C -0.10 -3.00 2.27 -10.71 -0.02 -3.03 16 15 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 16 C -0.10 -2.84 4.89 30.62 0.15 -2.70 16 17 C -0.13 -4.69 6.08 30.67 0.19 -4.50 16 18 C 0.17 8.17 5.30 86.36 0.46 8.63 16 19 N -0.61 -29.45 2.99 -699.12 -2.09 -31.55 16 20 C -0.26 -13.95 9.58 84.03 0.81 -13.14 16 21 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16 22 C -0.05 -2.74 4.92 84.86 0.42 -2.33 16 23 N -0.93 -54.60 11.20 21.65 0.24 -54.36 16 24 Si 0.96 44.15 29.59 68.60 2.03 46.18 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 C 0.15 5.74 5.26 86.36 0.45 6.20 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 2.06 6.48 -2.38 -0.02 2.05 16 34 H 0.31 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.41 10.44 7.07 -92.71 -0.66 9.79 16 36 H 0.08 1.87 6.59 -2.39 -0.02 1.86 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.56 6.23 -2.39 -0.01 1.55 16 39 H 0.07 1.90 6.62 -2.39 -0.02 1.88 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 2.66 6.06 -2.38 -0.01 2.65 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 46 H 0.05 1.80 6.75 -2.39 -0.02 1.79 16 47 H 0.02 0.95 6.06 -2.39 -0.01 0.93 16 Total: -1.00 -68.38 371.28 1.63 -66.75 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.33 Total: 20.09 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 6.91 Total: 8.65 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -7.50 Total: -121.04 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.14 Total: -20.63 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.38 1.63 -66.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025527863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.595 kcal (2) G-P(sol) polarization free energy of solvation -68.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds