Wall clock time and date at job start Tue Mar 31 2020 13:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46825 * 2 1 4 4 N 1.30614 * 125.42515 * 90.02753 * 3 2 1 5 5 C 1.33689 * 108.99697 * 179.97438 * 4 3 2 6 6 C 1.50704 * 126.27225 * 180.02562 * 5 4 3 7 7 C 1.36339 * 107.45336 * 0.02562 * 5 4 3 8 8 C 1.46729 * 126.64324 * 179.97438 * 7 5 4 9 9 O 1.21684 * 119.99728 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99878 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99771 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46840 * 204.99940 * 11 10 8 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 15 15 N 1.46496 * 109.47487 * 179.97438 * 14 13 12 16 16 C 1.36933 * 120.00258 * 274.99944 * 15 14 13 17 17 H 1.07997 * 120.00195 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00104 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00154 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99883 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47219 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47003 * 120.00388 * 20 18 16 23 23 H 1.48496 * 109.47087 * 239.99988 * 20 18 16 24 24 C 1.53005 * 109.47159 * 300.00546 * 14 13 12 25 25 C 1.52997 * 109.47452 * 59.99536 * 24 14 13 26 26 O 1.33668 * 125.42384 * 270.30934 * 3 2 1 27 27 H 1.09003 * 109.47408 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47114 * 300.00073 * 1 2 3 29 29 H 1.09002 * 109.47110 * 60.00249 * 1 2 3 30 30 H 1.09004 * 109.46964 * 240.00384 * 2 1 3 31 31 H 1.08992 * 109.47232 * 119.99795 * 2 1 3 32 32 H 1.09001 * 109.47186 * 269.98247 * 6 5 4 33 33 H 1.08998 * 109.47208 * 29.98379 * 6 5 4 34 34 H 1.09002 * 109.47030 * 149.97938 * 6 5 4 35 35 H 0.97006 * 119.99662 * 0.02562 * 10 8 7 36 36 H 1.08992 * 109.47397 * 325.00275 * 11 10 8 37 37 H 1.09002 * 109.47398 * 300.00326 * 12 11 10 38 38 H 1.09001 * 109.47194 * 60.00507 * 12 11 10 39 39 H 1.08996 * 109.47853 * 180.02562 * 13 12 11 40 40 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 41 41 H 1.09002 * 109.46716 * 60.00091 * 14 13 12 42 42 H 0.97007 * 119.99693 * 95.00333 * 15 14 13 43 43 H 0.96996 * 120.00649 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.46935 * 299.99411 * 24 14 13 45 45 H 1.09001 * 109.46812 * 179.97438 * 24 14 13 46 46 H 1.08993 * 109.47194 * 179.97438 * 25 24 14 47 47 H 1.09002 * 109.46695 * 59.99734 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1345 1.0643 5 6 2.7128 3.3433 0.6863 6 6 3.1135 4.4732 1.5995 7 6 2.7201 3.3666 -0.6769 8 6 3.1172 4.4914 -1.5314 9 8 3.4865 5.5364 -1.0291 10 7 3.0729 4.3671 -2.8727 11 6 3.4688 5.4903 -3.7259 12 6 2.7781 5.3661 -5.0855 13 6 3.1920 6.5388 -5.9767 14 6 4.7094 6.5202 -6.1720 15 7 5.1057 7.6427 -7.0259 16 6 5.0608 7.5156 -8.3885 17 1 4.7327 6.5880 -8.8339 18 6 5.4358 8.5794 -9.1976 19 7 5.8351 9.7100 -8.6550 20 14 5.3738 8.4061 -11.0566 21 1 4.8931 7.0466 -11.4113 22 1 4.4458 9.4208 -11.6176 23 1 6.7325 8.6137 -11.6187 24 6 5.4001 6.6442 -4.8124 25 6 4.9862 5.4716 -3.9211 26 8 2.2849 2.1533 -1.0892 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.2414 5.0888 1.8201 33 1 3.5146 4.0656 2.5274 34 1 3.8743 5.0825 1.1115 35 1 2.7781 3.5341 -3.2731 36 1 3.1745 6.4271 -3.2530 37 1 3.0724 4.4292 -5.5584 38 1 1.6971 5.3790 -4.9464 39 1 2.6997 6.4507 -6.9452 40 1 2.8980 7.4759 -5.5040 41 1 5.0034 5.5831 -6.6447 42 1 5.4001 8.4760 -6.6259 43 1 6.0968 10.4535 -9.2203 44 1 5.1061 7.5814 -4.3396 45 1 6.4812 6.6306 -4.9515 46 1 5.4786 5.5597 -2.9527 47 1 5.2802 4.5345 -4.3939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026588325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:50 Heat of formation + Delta-G solvation = -29.072666 kcal Electronic energy + Delta-G solvation = -26827.960705 eV Core-core repulsion = 23011.616999 eV Total energy + Delta-G solvation = -3816.343706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.78290 -40.02076 -38.01971 -35.79293 -34.90346 -34.64829 -33.08740 -31.21119 -30.64779 -30.43767 -28.40117 -27.06634 -25.27071 -23.71724 -22.36992 -22.28285 -21.87119 -21.02941 -20.62654 -19.61686 -18.25806 -17.33627 -17.03573 -16.45025 -16.21349 -15.29581 -15.20474 -14.86627 -14.69982 -14.33727 -13.97997 -13.80533 -13.59218 -13.52273 -13.42801 -13.13136 -12.89196 -12.65118 -12.57155 -12.24234 -12.23209 -11.83433 -11.77680 -11.49651 -11.30727 -11.16952 -10.91424 -10.84812 -10.76598 -10.73850 -10.32696 -10.23165 -10.13448 -9.74387 -9.58283 -9.28690 -8.98382 -8.86778 -6.94832 -5.75962 -3.04618 0.50453 2.03213 2.05847 2.86763 2.93576 3.42837 3.47320 3.48268 3.50671 4.32377 4.36683 4.55005 4.58069 4.59587 4.74393 4.88667 5.00088 5.13475 5.16658 5.22572 5.25924 5.35734 5.42239 5.51693 5.53265 5.56453 5.59436 5.62894 5.67484 5.70745 5.79615 5.84659 6.00500 6.02579 6.18538 6.23990 6.28092 6.41186 6.56122 6.57243 6.68309 6.96477 7.09162 7.14323 7.34979 7.70594 7.86848 8.42762 9.53758 10.12632 10.47111 11.46802 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.002212 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.909093 B =12655.829320 C =13400.421609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.030 4.030 3 C 0.221 3.779 4 N -0.488 5.488 5 C 0.081 3.919 6 C -0.082 4.082 7 C -0.118 4.118 8 C 0.608 3.392 9 O -0.511 6.511 10 N -0.712 5.712 11 C 0.145 3.855 12 C -0.122 4.122 13 C -0.131 4.131 14 C 0.177 3.823 15 N -0.725 5.725 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.121 4.121 25 C -0.121 4.121 26 O -0.188 6.188 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.402 0.598 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 -19.755 19.441 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.068 4.068 3 C 0.015 3.985 4 N -0.217 5.217 5 C -0.043 4.043 6 C -0.139 4.139 7 C -0.173 4.173 8 C 0.393 3.607 9 O -0.389 6.389 10 N -0.361 5.361 11 C 0.042 3.958 12 C -0.161 4.161 13 C -0.172 4.172 14 C 0.067 3.933 15 N -0.366 5.366 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.160 4.160 25 C -0.161 4.161 26 O -0.075 6.075 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.237 0.763 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.555 -19.272 20.124 29.457 hybrid contribution -0.067 -0.006 -1.838 1.839 sum -9.622 -19.278 18.286 28.259 Atomic orbital electron populations 1.21797 0.92636 1.03321 1.03194 1.20199 0.97173 0.83774 1.05675 1.26587 0.96699 0.96576 0.78649 1.70343 1.17802 1.03675 1.29928 1.22094 0.96970 0.93919 0.91334 1.20409 1.02966 0.93046 0.97434 1.23006 1.12715 0.86328 0.95289 1.16313 0.78101 0.84471 0.81834 1.90876 1.47708 1.26494 1.73792 1.46103 1.66759 1.18071 1.05174 1.21241 0.95151 0.89122 0.90325 1.21823 0.99415 1.00835 0.93997 1.22228 1.00320 0.96080 0.98598 1.20240 0.90942 0.92484 0.89660 1.42445 1.78823 1.12652 1.02641 1.19280 1.36886 0.98064 0.82572 0.91179 1.24751 1.02296 0.96174 0.97898 1.69667 1.51060 1.03491 1.33869 0.86142 0.77176 0.77144 0.85884 1.20605 1.21920 1.21911 1.21763 1.00882 0.97368 0.95952 1.21855 0.94419 0.99678 1.00109 1.84433 1.63525 1.22201 1.37347 0.90541 0.91620 0.91943 0.88409 0.87224 0.89943 0.90473 0.88470 0.76344 0.88989 0.91729 0.92128 0.91448 0.92305 0.93588 0.78258 0.93578 0.91936 0.91494 0.91886 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 37.16 0.37 -0.27 16 2 C -0.03 -0.15 6.56 -27.88 -0.18 -0.33 16 3 C 0.22 2.06 7.57 -12.80 -0.10 1.97 16 4 N -0.49 -5.55 11.26 -7.07 -0.08 -5.63 16 5 C 0.08 0.97 7.16 -82.47 -0.59 0.38 16 6 C -0.08 -0.82 9.87 36.01 0.36 -0.47 16 7 C -0.12 -1.43 7.18 -36.84 -0.26 -1.70 16 8 C 0.61 7.95 7.75 -12.83 -0.10 7.85 16 9 O -0.51 -7.90 14.46 5.20 0.08 -7.83 16 10 N -0.71 -8.19 5.07 -55.10 -0.28 -8.47 16 11 C 0.14 1.89 2.46 -67.93 -0.17 1.72 16 12 C -0.12 -1.58 5.39 -26.73 -0.14 -1.72 16 13 C -0.13 -2.23 5.50 -26.73 -0.15 -2.37 16 14 C 0.18 3.40 2.77 -67.93 -0.19 3.21 16 15 N -0.73 -17.99 5.12 -53.43 -0.27 -18.26 16 16 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 20 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 C -0.12 -2.01 5.39 -26.73 -0.14 -2.15 16 25 C -0.12 -1.69 5.49 -26.73 -0.15 -1.84 16 26 O -0.19 -1.98 10.57 4.43 0.05 -1.93 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.07 6.47 -51.93 -0.34 0.74 16 35 H 0.40 3.79 8.40 -40.82 -0.34 3.44 16 36 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -32.59 385.42 -8.39 -40.98 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.70 Total: 8.41 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.69 Total: -2.90 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.09 Total: -59.84 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.12 Total: -9.76 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.59 -8.39 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026588325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.906 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds