Wall clock time and date at job start Tue Mar 31 2020 13:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47370 * 2 1 4 4 C 1.50700 * 109.46919 * 179.97438 * 3 2 1 5 5 C 1.35318 * 126.66623 * 90.29044 * 4 3 2 6 6 C 1.42275 * 103.92137 * 180.08779 * 5 4 3 7 7 C 1.48332 * 126.93636 * 179.90871 * 6 5 4 8 8 O 1.21491 * 119.99991 * 353.63715 * 7 6 5 9 9 N 1.34777 * 119.99725 * 173.63905 * 7 6 5 10 10 C 1.46927 * 120.63151 * 353.23208 * 9 7 6 11 11 C 1.53194 * 108.77711 * 233.59082 * 10 9 7 12 12 C 1.53046 * 109.31082 * 305.36524 * 11 10 9 13 13 C 1.53042 * 109.53615 * 61.36513 * 12 11 10 14 14 H 1.09000 * 109.49553 * 58.61945 * 13 12 11 15 15 N 1.46502 * 109.49463 * 178.67996 * 13 12 11 16 16 C 1.46500 * 119.99636 * 60.00567 * 15 13 12 17 17 C 1.36928 * 120.00080 * 239.99904 * 15 13 12 18 18 H 1.07995 * 120.00381 * 336.84177 * 17 15 13 19 19 C 1.38818 * 120.00128 * 156.83788 * 17 15 13 20 20 N 1.31623 * 119.99404 * 345.84512 * 19 17 15 21 21 Si 1.86793 * 120.00298 * 165.84733 * 19 17 15 22 22 H 1.48495 * 109.47401 * 90.00007 * 21 19 17 23 23 H 1.48505 * 109.47109 * 210.00139 * 21 19 17 24 24 H 1.48506 * 109.47026 * 330.00109 * 21 19 17 25 25 C 1.46928 * 120.62931 * 173.21807 * 9 7 6 26 26 N 1.30989 * 106.12114 * 359.64067 * 6 5 4 27 27 O 1.20899 * 111.44242 * 0.23488 * 26 6 5 28 28 H 1.08999 * 109.47688 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47225 * 300.00347 * 1 2 3 30 30 H 1.09009 * 109.47071 * 60.00157 * 1 2 3 31 31 H 1.08999 * 109.47225 * 239.99653 * 2 1 3 32 32 H 1.09006 * 109.46843 * 120.00310 * 2 1 3 33 33 H 1.08997 * 109.46948 * 60.00118 * 3 2 1 34 34 H 1.08997 * 109.47241 * 299.99754 * 3 2 1 35 35 H 1.07996 * 128.03733 * 359.95373 * 5 4 3 36 36 H 1.08999 * 109.58673 * 113.80029 * 10 9 7 37 37 H 1.09006 * 109.70457 * 353.44804 * 10 9 7 38 38 H 1.08997 * 109.49587 * 185.41521 * 11 10 9 39 39 H 1.08995 * 109.52221 * 65.33382 * 11 10 9 40 40 H 1.08996 * 109.46083 * 301.34440 * 12 11 10 41 41 H 1.08994 * 109.45786 * 181.38537 * 12 11 10 42 42 H 1.09003 * 109.47177 * 262.74257 * 16 15 13 43 43 H 1.09000 * 109.47346 * 22.74206 * 16 15 13 44 44 H 1.09002 * 109.47054 * 142.74577 * 16 15 13 45 45 H 0.96999 * 119.99388 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.58627 * 6.62097 * 25 9 7 47 47 H 1.09006 * 109.58262 * 246.19592 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4423 0.0006 5 6 4.3556 1.4476 -1.0844 6 6 5.6674 1.4427 -0.5338 7 6 6.9482 1.4435 -1.2821 8 8 6.9450 1.3322 -2.4919 9 7 8.1154 1.5677 -0.6198 10 6 8.1317 1.8508 0.8218 11 6 9.0038 3.0852 1.0721 12 6 10.3883 2.8592 0.4602 13 6 10.2537 2.6613 -1.0514 14 1 9.7790 3.5379 -1.4922 15 7 11.5822 2.4764 -1.6405 16 6 12.4246 1.3574 -1.2111 17 6 12.0365 3.3495 -2.5925 18 1 11.3339 3.9246 -3.1772 19 6 13.4004 3.4956 -2.8061 20 7 14.2584 3.0216 -1.9277 21 14 14.0178 4.3648 -4.3399 22 1 14.1575 5.8171 -4.0635 23 1 15.3376 3.8056 -4.7283 24 1 13.0492 4.1625 -5.4472 25 6 9.3958 1.4222 -1.3257 26 7 5.5158 1.4432 0.7673 27 8 4.3469 1.4429 1.0760 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 4.0711 1.4521 -2.1262 36 1 8.5455 0.9963 1.3574 37 1 7.1170 2.0437 1.1700 38 1 9.1027 3.2492 2.1451 39 1 8.5406 3.9578 0.6118 40 1 10.8410 1.9723 0.9037 41 1 11.0187 3.7260 0.6582 42 1 13.1315 1.7032 -0.4569 43 1 11.7979 0.5720 -0.7887 44 1 12.9713 0.9644 -2.0683 45 1 15.2114 3.1240 -2.0768 46 1 9.2144 1.3332 -2.3968 47 1 9.9127 0.5327 -0.9653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027635071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:31 Heat of formation + Delta-G solvation = 34.045107 kcal Electronic energy + Delta-G solvation = -27465.376737 eV Core-core repulsion = 23651.770023 eV Total energy + Delta-G solvation = -3813.606714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.20035 -41.33240 -39.04274 -36.93758 -36.56740 -35.14965 -33.94097 -32.99795 -32.64782 -30.55923 -28.09391 -27.97458 -27.28148 -25.61380 -24.68346 -23.73958 -23.09097 -22.50443 -21.02981 -20.04296 -18.89749 -18.84870 -18.49142 -18.02297 -17.29168 -16.75212 -16.36800 -15.99057 -15.78135 -15.58507 -15.43080 -15.08621 -14.84260 -14.57051 -14.54423 -14.14805 -14.12579 -13.89733 -13.78037 -13.30454 -12.92838 -12.82342 -12.64738 -12.52612 -12.48105 -12.36776 -12.14347 -12.09285 -12.00069 -11.87453 -11.69747 -11.60333 -11.50395 -11.48115 -11.25862 -10.70981 -10.42425 -9.89673 -8.80753 -7.85978 -5.36139 -0.03604 0.62675 1.42351 1.44207 1.53395 1.57847 1.92951 1.98842 2.47614 2.72668 3.25386 3.33557 3.54384 3.76613 3.86534 3.92210 3.97809 4.09414 4.14212 4.14902 4.16556 4.27654 4.29829 4.55022 4.59215 4.63562 4.71347 4.81323 4.81949 4.83273 4.89480 4.93957 4.95024 5.01040 5.03235 5.21224 5.31208 5.32090 5.35092 5.39905 5.41144 5.51854 5.60783 5.68832 6.13529 6.28786 6.73192 7.02105 7.10719 7.80899 8.24413 9.15495 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.028432 B = 0.002535 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.571138 B =11041.341174 C =11559.726270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.037 4.037 4 C -0.004 4.004 5 C -0.194 4.194 6 C -0.038 4.038 7 C 0.586 3.414 8 O -0.565 6.565 9 N -0.590 5.590 10 C 0.089 3.911 11 C -0.120 4.120 12 C -0.122 4.122 13 C 0.168 3.832 14 H 0.045 0.955 15 N -0.607 5.607 16 C 0.176 3.824 17 C -0.268 4.268 18 H 0.061 0.939 19 C -0.048 4.048 20 N -0.932 5.932 21 Si 0.967 3.033 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.276 1.276 25 C 0.112 3.888 26 N -0.336 5.336 27 O 0.125 5.875 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.189 0.811 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.014 0.986 43 H 0.033 0.967 44 H 0.010 0.990 45 H 0.250 0.750 46 H 0.066 0.934 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.317 -4.817 9.730 30.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.074 4.074 4 C -0.068 4.068 5 C -0.217 4.217 6 C -0.195 4.195 7 C 0.373 3.627 8 O -0.443 6.443 9 N -0.322 5.322 10 C -0.032 4.032 11 C -0.158 4.158 12 C -0.161 4.161 13 C 0.060 3.940 14 H 0.064 0.936 15 N -0.330 5.330 16 C 0.031 3.969 17 C -0.398 4.398 18 H 0.079 0.921 19 C -0.244 4.244 20 N -0.578 5.578 21 Si 0.795 3.205 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.201 1.201 25 C -0.012 4.012 26 N -0.038 5.038 27 O 0.051 5.949 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.206 0.794 36 H 0.100 0.900 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.051 0.949 44 H 0.029 0.971 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.186 -4.889 10.070 29.401 hybrid contribution 1.031 0.425 -1.780 2.101 sum -26.155 -4.464 8.290 27.798 Atomic orbital electron populations 1.21752 0.93774 1.02412 1.02860 1.21556 0.97212 0.94620 1.02709 1.20533 0.80194 0.99625 1.07080 1.25044 0.97319 1.00482 0.83922 1.22624 0.88772 1.07544 1.02734 1.23286 0.96287 1.09210 0.90728 1.17421 0.82485 0.76771 0.85978 1.90762 1.86926 1.52196 1.14372 1.48117 1.04921 1.68134 1.11026 1.22556 1.03943 0.98488 0.78234 1.21869 0.94251 0.97280 1.02440 1.21952 0.97066 1.01420 0.95685 1.20673 0.85286 0.94747 0.93252 0.93632 1.44064 1.14010 1.29186 1.45722 1.20550 0.91986 0.87267 0.97066 1.19439 0.90712 1.18705 1.10960 0.92076 1.25743 0.96448 1.01079 1.01103 1.70215 1.01147 1.51170 1.35269 0.85278 0.77282 0.78129 0.79777 1.20893 1.21509 1.20089 1.22101 0.82263 0.99692 0.97139 1.73996 0.97760 1.17286 1.14787 1.84762 1.10947 1.65032 1.34174 0.92425 0.91555 0.91809 0.91984 0.91690 0.86960 0.86313 0.79418 0.90031 0.85834 0.87854 0.92393 0.92045 0.93455 0.96761 0.94870 0.97135 0.94107 0.91585 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 71.98 0.71 0.06 16 2 C -0.12 -0.81 5.92 30.59 0.18 -0.63 16 3 C -0.04 -0.22 5.78 29.85 0.17 -0.05 16 4 C 0.00 -0.06 6.73 25.01 0.17 0.10 16 5 C -0.19 -3.97 10.93 22.60 0.25 -3.72 16 6 C -0.04 -1.04 6.88 42.96 0.30 -0.75 16 7 C 0.59 20.48 7.71 86.93 0.67 21.15 16 8 O -0.56 -23.50 16.38 -3.69 -0.06 -23.56 16 9 N -0.59 -19.96 2.97 -821.76 -2.44 -22.40 16 10 C 0.09 2.42 6.13 86.36 0.53 2.95 16 11 C -0.12 -3.32 6.08 30.67 0.19 -3.13 16 12 C -0.12 -4.43 5.15 30.62 0.16 -4.28 16 13 C 0.17 7.28 2.73 45.07 0.12 7.40 16 14 H 0.05 2.12 7.87 -2.39 -0.02 2.11 16 15 N -0.61 -31.60 2.81 -702.35 -1.97 -33.57 16 16 C 0.18 8.86 8.03 127.77 1.03 9.88 16 17 C -0.27 -15.43 9.58 84.04 0.80 -14.63 16 18 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 19 C -0.05 -2.78 5.10 84.86 0.43 -2.35 16 20 N -0.93 -55.94 10.77 21.65 0.23 -55.71 16 21 Si 0.97 46.66 29.58 68.60 2.03 48.68 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.11 4.40 5.79 86.36 0.50 4.90 16 26 N -0.34 -7.96 8.64 -49.51 -0.43 -8.38 16 27 O 0.13 2.31 11.18 71.84 0.80 3.11 16 28 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.11 0.30 8.14 -2.39 -0.02 0.29 16 34 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.19 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.12 3.10 4.19 -13.18 -0.06 3.05 16 38 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 2.19 7.71 -2.39 -0.02 2.17 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.01 0.77 7.20 -2.39 -0.02 0.76 16 43 H 0.03 1.41 6.37 -2.39 -0.02 1.40 16 44 H 0.01 0.55 7.52 -2.39 -0.02 0.53 16 45 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 46 H 0.07 2.94 7.00 -2.39 -0.02 2.92 16 47 H 0.07 2.79 6.51 -2.38 -0.02 2.77 16 Total: -1.00 -71.84 374.22 5.28 -66.56 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.92 Total: 8.36 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 6.21 Total: 16.92 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -4.61 Total: -120.07 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.74 Total: -20.45 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -71.84 5.28 -66.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027635071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.606 kcal (2) G-P(sol) polarization free energy of solvation -71.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds