Wall clock time and date at job start Tue Mar 31 2020 13:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47061 * 2 1 4 4 N 1.29935 * 125.37922 * 90.31628 * 3 2 1 5 5 C 1.36067 * 108.48012 * 180.11902 * 4 3 2 6 6 C 1.47423 * 126.44881 * 179.86091 * 5 4 3 7 7 O 1.21608 * 119.99575 * 179.68443 * 6 5 4 8 8 N 1.34775 * 119.99792 * 359.68112 * 6 5 4 9 9 C 1.46502 * 119.99355 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.24956 * 324.65572 * 9 8 6 11 11 C 1.54843 * 109.35442 * 205.00225 * 9 8 6 12 12 C 1.50133 * 110.81433 * 200.92630 * 11 9 8 13 13 C 1.52537 * 105.40949 * 97.68395 * 12 11 9 14 14 C 1.46233 * 114.27505 * 270.59104 * 13 12 11 15 15 N 1.50169 * 107.53454 * 58.41356 * 14 13 12 16 16 C 1.36931 * 120.53924 * 109.56355 * 15 14 13 17 17 H 1.07996 * 120.00359 * 172.85102 * 16 15 14 18 18 C 1.38816 * 119.99720 * 352.84565 * 16 15 14 19 19 N 1.31610 * 120.00352 * 319.29691 * 18 16 15 20 20 Si 1.86800 * 119.99557 * 139.29630 * 18 16 15 21 21 H 1.48502 * 109.46986 * 269.99911 * 20 18 16 22 22 H 1.48503 * 109.47198 * 150.00437 * 20 18 16 23 23 H 1.48497 * 109.47483 * 30.00376 * 20 18 16 24 24 C 1.43437 * 118.92249 * 289.84046 * 15 14 13 25 25 C 1.36091 * 107.09935 * 359.59346 * 5 4 3 26 26 C 1.50705 * 126.52296 * 180.20996 * 25 5 4 27 27 O 1.34049 * 125.38190 * 269.97345 * 3 2 1 28 28 H 1.09009 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46813 * 299.99296 * 1 2 3 30 30 H 1.08999 * 109.47416 * 59.99977 * 1 2 3 31 31 H 1.09004 * 109.46954 * 240.00088 * 2 1 3 32 32 H 1.08999 * 109.47298 * 120.00565 * 2 1 3 33 33 H 0.96995 * 120.00714 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.21360 * 80.58613 * 11 9 8 35 35 H 1.09001 * 109.21273 * 321.27253 * 11 9 8 36 36 H 1.09000 * 110.25000 * 338.71443 * 12 11 9 37 37 H 1.08998 * 110.37335 * 216.71650 * 12 11 9 38 38 H 1.09000 * 108.51819 * 149.35268 * 13 12 11 39 39 H 1.08999 * 108.40112 * 31.74896 * 13 12 11 40 40 H 1.09001 * 109.84973 * 298.90574 * 14 13 12 41 41 H 1.08998 * 109.89795 * 177.95093 * 14 13 12 42 42 H 0.97004 * 120.00139 * 353.65946 * 19 18 16 43 43 H 1.09002 * 108.15737 * 213.02764 * 24 15 14 44 44 H 1.08996 * 108.16255 * 329.59359 * 24 15 14 45 45 H 1.08997 * 109.46927 * 89.99699 * 26 25 5 46 46 H 1.09000 * 109.46513 * 210.00097 * 26 25 5 47 47 H 1.08995 * 109.46997 * 329.99555 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2886 2.1281 1.0594 5 6 2.7179 3.3572 0.6639 6 6 3.1131 4.4719 1.5439 7 8 3.4862 5.5242 1.0619 8 7 3.0609 4.3248 2.8826 9 6 3.4531 5.4328 3.7571 10 1 4.2777 5.9781 3.2982 11 6 3.9086 4.8699 5.1257 12 6 3.8316 5.9265 6.1895 13 6 2.5051 5.6870 6.9034 14 6 1.3704 6.4008 6.3190 15 7 1.2507 5.9650 4.8870 16 6 0.2062 5.1762 4.4847 17 1 0.0633 4.9629 3.4357 18 6 -0.6689 4.6506 5.4254 19 7 -0.2068 4.1847 6.5662 20 14 -2.5026 4.6046 5.0719 21 1 -3.1313 5.8607 5.5540 22 1 -3.1127 3.4456 5.7716 23 1 -2.7216 4.4712 3.6093 24 6 2.2516 6.3834 3.9485 25 6 2.7196 3.3617 -0.6970 26 6 3.1243 4.5065 -1.5897 27 8 2.2915 2.1524 -1.0929 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.7636 3.4853 3.2671 34 1 4.9368 4.5173 5.0444 35 1 3.2649 4.0349 5.4024 36 1 3.8432 6.9184 5.7376 37 1 4.6608 5.8217 6.8892 38 1 2.6107 5.9967 7.9432 39 1 2.2906 4.6186 6.8816 40 1 1.5458 7.4756 6.3653 41 1 0.4572 6.1515 6.8593 42 1 0.7501 4.1233 6.7131 43 1 1.7728 6.5174 2.9785 44 1 2.6341 7.3524 4.2692 45 1 4.1907 4.4400 -1.8048 46 1 2.5617 4.4566 -2.5219 47 1 2.9129 5.4507 -1.0879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034443197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:16 Heat of formation + Delta-G solvation = 6.042906 kcal Electronic energy + Delta-G solvation = -28645.533103 eV Core-core repulsion = 24830.712123 eV Total energy + Delta-G solvation = -3814.820980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.36909 -39.40522 -37.88188 -35.03568 -34.43792 -34.07095 -33.24487 -31.61768 -31.09889 -30.00882 -27.22996 -26.01805 -24.73045 -23.99420 -23.06508 -22.40261 -21.16915 -20.43728 -19.77257 -19.16846 -17.64431 -17.06231 -16.89989 -15.77702 -15.72418 -15.11497 -14.77786 -14.67053 -14.40442 -14.28715 -13.67538 -13.58850 -13.47612 -13.36065 -13.14794 -12.67682 -12.66261 -12.44218 -12.34967 -12.11062 -11.88884 -11.80142 -11.36416 -11.14807 -11.01088 -10.83300 -10.63795 -10.53842 -10.35969 -10.13927 -10.02978 -9.78974 -9.73223 -9.60591 -9.41874 -8.80501 -8.56017 -8.09304 -6.91968 -6.12191 -2.97060 1.19936 2.15682 2.49161 3.50531 3.56414 3.58858 3.68094 3.75022 3.94778 4.62060 4.65120 4.87617 4.95201 4.97656 5.16746 5.18630 5.23728 5.25314 5.34914 5.42182 5.44432 5.49741 5.59751 5.72809 5.75256 5.90327 5.96484 5.99823 6.00743 6.03275 6.06254 6.21371 6.27565 6.37654 6.42119 6.63384 6.71448 6.72465 6.88726 6.92904 7.10838 7.26794 7.28677 7.56777 8.02949 8.10360 8.58067 8.63348 9.12775 9.90297 10.33791 11.18138 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.004930 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.338514 B = 5678.536510 C = 7179.323072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.023 4.023 3 C 0.189 3.811 4 N -0.449 5.449 5 C -0.064 4.064 6 C 0.598 3.402 7 O -0.552 6.552 8 N -0.682 5.682 9 C 0.113 3.887 10 H 0.076 0.924 11 C -0.112 4.112 12 C -0.109 4.109 13 C -0.136 4.136 14 C 0.130 3.870 15 N -0.586 5.586 16 C -0.348 4.348 17 H 0.063 0.937 18 C -0.016 4.016 19 N -0.903 5.903 20 Si 1.037 2.963 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.295 1.295 24 C 0.154 3.846 25 C 0.027 3.973 26 C -0.072 4.072 27 O -0.200 6.200 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.408 0.592 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.024 0.976 41 H 0.095 0.905 42 H 0.273 0.727 43 H 0.041 0.959 44 H 0.038 0.962 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.454 -4.973 -11.326 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.061 4.061 3 C -0.020 4.020 4 N -0.178 5.178 5 C -0.185 4.185 6 C 0.383 3.617 7 O -0.431 6.431 8 N -0.330 5.330 9 C 0.005 3.995 10 H 0.094 0.906 11 C -0.150 4.150 12 C -0.147 4.147 13 C -0.175 4.175 14 C 0.006 3.994 15 N -0.307 5.307 16 C -0.476 4.476 17 H 0.081 0.919 18 C -0.218 4.218 19 N -0.545 5.545 20 Si 0.868 3.132 21 H -0.223 1.223 22 H -0.220 1.220 23 H -0.222 1.222 24 C 0.023 3.977 25 C -0.029 4.029 26 C -0.128 4.128 27 O -0.088 6.088 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.244 0.756 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.121 -4.817 -10.379 12.976 hybrid contribution 1.398 -0.057 -1.185 1.833 sum 7.519 -4.874 -11.563 14.629 Atomic orbital electron populations 1.21810 0.92916 1.02984 1.03386 1.20072 0.97045 0.83917 1.05060 1.26215 1.00614 0.96910 0.78302 1.70785 1.14659 1.02625 1.29757 1.21646 1.10042 0.94476 0.92287 1.16633 0.77960 0.84888 0.82189 1.90717 1.49637 1.27384 1.75395 1.45810 1.64612 1.17870 1.04707 1.22854 0.99240 0.88553 0.88816 0.90578 1.21667 0.99630 0.99437 0.94262 1.20940 0.97646 0.98989 0.97158 1.21104 0.95300 1.03098 0.97996 1.20595 0.98493 0.94716 0.85627 1.44406 1.24108 1.57888 1.04325 1.19915 1.04288 1.29617 0.93782 0.91885 1.25354 1.04486 0.96940 0.95016 1.70829 1.16813 1.37810 1.29014 0.83925 0.78089 0.76338 0.74841 1.22275 1.22043 1.22150 1.20621 0.88896 0.93895 0.94263 1.23669 0.98945 0.85635 0.94614 1.20541 1.02061 0.92681 0.97509 1.84278 1.64071 1.22392 1.38049 0.90872 0.91201 0.92246 0.89048 0.87457 0.75632 0.93637 0.90925 0.91739 0.92618 0.94205 0.91008 0.95827 0.88735 0.91400 0.94093 0.94331 0.89386 0.90496 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.02 -0.22 6.56 -27.89 -0.18 -0.40 16 3 C 0.19 2.68 7.56 -13.08 -0.10 2.58 16 4 N -0.45 -7.78 11.06 -7.66 -0.08 -7.87 16 5 C -0.06 -1.15 6.99 -83.02 -0.58 -1.73 16 6 C 0.60 11.66 7.63 -12.52 -0.10 11.56 16 7 O -0.55 -11.22 14.47 5.27 0.08 -11.14 16 8 N -0.68 -13.31 5.08 -53.23 -0.27 -13.58 16 9 C 0.11 2.15 2.91 -66.22 -0.19 1.96 16 10 H 0.08 1.41 7.57 -51.93 -0.39 1.02 16 11 C -0.11 -1.97 5.23 -27.19 -0.14 -2.11 16 12 C -0.11 -1.84 5.76 -28.39 -0.16 -2.01 16 13 C -0.14 -2.67 4.96 -30.18 -0.15 -2.82 16 14 C 0.13 2.92 5.22 -5.21 -0.03 2.89 16 15 N -0.59 -14.11 2.62 -175.41 -0.46 -14.57 16 16 C -0.35 -9.47 9.46 -15.06 -0.14 -9.61 16 17 H 0.06 1.83 8.05 -52.49 -0.42 1.41 16 18 C -0.02 -0.44 4.53 -17.43 -0.08 -0.52 16 19 N -0.90 -25.67 11.99 55.49 0.67 -25.00 16 20 Si 1.04 25.33 30.05 -169.99 -5.11 20.22 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.15 3.31 4.74 -4.93 -0.02 3.29 16 25 C 0.03 0.42 7.44 -35.08 -0.26 0.16 16 26 C -0.07 -0.85 9.88 36.01 0.36 -0.49 16 27 O -0.20 -2.86 10.73 6.53 0.07 -2.79 16 28 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.41 8.24 8.17 -40.82 -0.33 7.90 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.46 6.58 -51.93 -0.34 1.11 16 36 H 0.06 1.08 6.28 -51.93 -0.33 0.75 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.60 4.65 -51.93 -0.24 1.35 16 40 H 0.02 0.50 8.13 -51.93 -0.42 0.07 16 41 H 0.09 2.42 5.61 -51.93 -0.29 2.13 16 42 H 0.27 7.56 4.95 -40.82 -0.20 7.36 16 43 H 0.04 0.97 7.81 -51.93 -0.41 0.57 16 44 H 0.04 0.78 6.89 -51.93 -0.36 0.42 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.11 1.53 6.48 -51.93 -0.34 1.19 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -31.27 368.66 -8.07 -39.33 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.10 Total: 8.18 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.42 Total: 1.67 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.15 Total: -61.03 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.15 Total: -13.93 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.11 Total: 20.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.27 -8.07 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034443197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.377 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds