Wall clock time and date at job start Tue Mar 31 2020 13:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47022 * 2 1 4 4 N 1.29930 * 125.37604 * 90.29660 * 3 2 1 5 5 C 1.36071 * 108.47600 * 180.16161 * 4 3 2 6 6 C 1.47419 * 126.45041 * 179.82032 * 5 4 3 7 7 O 1.21613 * 120.00077 * 179.69276 * 6 5 4 8 8 N 1.34779 * 119.99871 * 359.69899 * 6 5 4 9 9 C 1.46502 * 119.99804 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.36849 * 35.25113 * 9 8 6 11 11 C 1.50883 * 109.36326 * 154.99783 * 9 8 6 12 12 C 1.52567 * 109.35575 * 211.94405 * 11 9 8 13 13 C 1.47087 * 114.33093 * 274.99165 * 12 11 9 14 14 C 1.54871 * 110.32487 * 62.79788 * 13 12 11 15 15 N 1.44571 * 109.59928 * 288.73845 * 14 13 12 16 16 C 1.36940 * 118.64251 * 270.70417 * 15 14 13 17 17 H 1.08000 * 120.00444 * 145.31959 * 16 15 14 18 18 C 1.38816 * 119.99857 * 325.31545 * 16 15 14 19 19 N 1.31619 * 119.99734 * 330.03410 * 18 16 15 20 20 Si 1.86795 * 119.99913 * 150.03079 * 18 16 15 21 21 H 1.48494 * 109.47128 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.47157 * 300.00280 * 20 18 16 23 23 H 1.48499 * 109.47069 * 60.00357 * 20 18 16 24 24 C 1.47601 * 122.71689 * 90.98352 * 15 14 13 25 25 C 1.36091 * 107.09984 * 359.56874 * 5 4 3 26 26 C 1.50703 * 126.52261 * 180.28376 * 25 5 4 27 27 O 1.34048 * 125.37987 * 269.97361 * 3 2 1 28 28 H 1.09002 * 109.47202 * 60.00170 * 1 2 3 29 29 H 1.09000 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47175 * 300.00333 * 1 2 3 31 31 H 1.09000 * 109.47484 * 240.00076 * 2 1 3 32 32 H 1.08994 * 109.46967 * 119.99839 * 2 1 3 33 33 H 0.97001 * 120.00060 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.49115 * 91.98799 * 11 9 8 35 35 H 1.08999 * 109.51177 * 331.92273 * 11 9 8 36 36 H 1.08997 * 108.51444 * 153.73241 * 12 11 9 37 37 H 1.09001 * 108.39135 * 36.15657 * 12 11 9 38 38 H 1.08999 * 109.32984 * 302.53862 * 13 12 11 39 39 H 1.08999 * 109.18995 * 182.97443 * 13 12 11 40 40 H 1.09002 * 109.44705 * 168.69405 * 14 13 12 41 41 H 1.08996 * 109.44605 * 48.77483 * 14 13 12 42 42 H 0.97000 * 120.00320 * 355.10695 * 19 18 16 43 43 H 1.09000 * 108.95100 * 78.29056 * 24 15 14 44 44 H 1.09000 * 108.95211 * 196.92687 * 24 15 14 45 45 H 1.09001 * 109.46889 * 89.99734 * 26 25 5 46 46 H 1.08997 * 109.46548 * 209.99489 * 26 25 5 47 47 H 1.08996 * 109.47200 * 329.99182 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2882 2.1282 1.0594 5 6 2.7168 3.3576 0.6639 6 6 3.1106 4.4729 1.5438 7 8 3.4830 5.5255 1.0619 8 7 3.0581 4.3259 2.8826 9 6 3.4500 5.4340 3.7571 10 1 3.1547 6.3779 3.2989 11 6 2.7593 5.2873 5.0905 12 6 2.4842 6.6706 5.6724 13 6 3.6105 7.2477 6.4220 14 6 4.8266 7.4602 5.4868 15 7 5.3994 6.1795 5.1375 16 6 6.3738 5.6545 5.9437 17 1 6.4340 4.5865 6.0928 18 6 7.2844 6.4950 6.5694 19 7 7.6265 7.6327 6.0031 20 14 8.0239 6.0112 8.2151 21 1 8.9607 7.0708 8.6674 22 1 6.9394 5.8481 9.2164 23 1 8.7600 4.7297 8.0695 24 6 4.9815 5.4174 3.9446 25 6 2.7189 3.3620 -0.6970 26 6 3.1245 4.5065 -1.5897 27 8 2.2915 2.1525 -1.0929 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7608 3.4864 3.2670 34 1 3.3995 4.7270 5.7720 35 1 1.8175 4.7554 4.9561 36 1 1.6244 6.6011 6.3386 37 1 2.2322 7.3443 4.8533 38 1 3.8905 6.5715 7.2298 39 1 3.3072 8.2063 6.8428 40 1 5.5755 8.0658 5.9972 41 1 4.5025 7.9720 4.5807 42 1 7.2981 7.8515 5.1170 43 1 5.4540 5.8517 3.0636 44 1 5.3142 4.3847 4.0498 45 1 4.1910 4.4394 -1.8044 46 1 2.5622 4.4567 -2.5221 47 1 2.9134 5.4509 -1.0881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034443198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:19 Heat of formation + Delta-G solvation = -30.675459 kcal Electronic energy + Delta-G solvation = -27797.271162 eV Core-core repulsion = 23980.857954 eV Total energy + Delta-G solvation = -3816.413208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.58484 -41.06973 -39.40550 -36.50665 -36.15244 -35.11358 -35.05444 -32.91320 -32.63173 -31.60092 -28.39566 -27.70050 -26.22876 -25.73413 -24.72924 -23.74130 -22.42795 -21.85802 -21.13909 -20.96793 -19.25449 -19.02746 -18.12688 -17.44829 -16.99035 -16.71166 -16.27681 -15.93826 -15.69003 -15.58026 -15.44590 -15.34727 -14.90943 -14.65749 -14.35840 -14.21646 -14.15253 -13.99719 -13.58490 -13.46459 -13.36723 -12.82664 -12.63190 -12.61250 -12.44755 -12.40580 -12.11323 -12.06661 -11.93711 -11.89539 -11.83838 -11.61842 -11.43495 -11.29513 -11.21193 -10.56867 -10.21485 -9.85791 -8.87857 -8.19601 -5.49932 -0.07156 0.86611 1.35143 1.58032 1.65116 1.84524 1.93129 2.12308 2.64573 2.76919 3.16953 3.44392 3.49679 3.66484 3.77405 3.91444 4.03059 4.11744 4.18451 4.22849 4.24304 4.31148 4.33057 4.44870 4.49593 4.52418 4.67585 4.75439 4.80798 4.89764 4.94366 4.96324 4.98021 5.01388 5.03603 5.08837 5.20577 5.23249 5.30228 5.32633 5.37149 5.49801 5.59913 5.90840 6.22231 6.36104 6.51739 6.99739 7.12296 7.79455 8.16705 8.91405 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.002936 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.489184 B = 9535.753491 C = 9611.560347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.025 4.025 3 C 0.201 3.799 4 N -0.480 5.480 5 C -0.103 4.103 6 C 0.597 3.403 7 O -0.563 6.563 8 N -0.696 5.696 9 C 0.150 3.850 10 H 0.070 0.930 11 C -0.105 4.105 12 C -0.098 4.098 13 C -0.129 4.129 14 C 0.142 3.858 15 N -0.596 5.596 16 C -0.363 4.363 17 H 0.041 0.959 18 C -0.066 4.066 19 N -0.923 5.923 20 Si 1.110 2.890 21 H -0.291 1.291 22 H -0.275 1.275 23 H -0.278 1.278 24 C 0.148 3.852 25 C 0.044 3.956 26 C -0.075 4.075 27 O -0.194 6.194 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.414 0.586 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.023 0.977 42 H 0.251 0.749 43 H -0.014 1.014 44 H 0.040 0.960 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.487 -14.467 -12.865 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 C -0.009 4.009 4 N -0.209 5.209 5 C -0.222 4.222 6 C 0.383 3.617 7 O -0.443 6.443 8 N -0.346 5.346 9 C 0.045 3.955 10 H 0.088 0.912 11 C -0.143 4.143 12 C -0.135 4.135 13 C -0.169 4.169 14 C 0.015 3.985 15 N -0.319 5.319 16 C -0.492 4.492 17 H 0.059 0.941 18 C -0.264 4.264 19 N -0.563 5.563 20 Si 0.935 3.065 21 H -0.217 1.217 22 H -0.201 1.201 23 H -0.204 1.204 24 C 0.022 3.978 25 C -0.013 4.013 26 C -0.131 4.131 27 O -0.082 6.082 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.251 0.749 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.061 0.939 43 H 0.004 0.996 44 H 0.058 0.942 45 H 0.118 0.882 46 H 0.129 0.871 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.307 -13.428 -11.375 23.992 hybrid contribution -0.412 -0.334 -1.833 1.908 sum -16.718 -13.761 -13.209 25.364 Atomic orbital electron populations 1.21785 0.92029 1.04439 1.02229 1.20449 0.97523 0.81191 1.07149 1.27235 0.98220 0.97926 0.77487 1.70690 1.16713 1.02365 1.31141 1.21355 1.13273 0.94658 0.92888 1.17039 0.76922 0.85351 0.82342 1.90770 1.49202 1.28658 1.75641 1.45868 1.65976 1.17799 1.04974 1.21204 0.94201 0.89316 0.90823 0.91238 1.21191 1.00029 0.98942 0.94179 1.20233 0.98236 0.95245 0.99833 1.21220 0.96313 1.00364 0.99007 1.20927 0.94574 0.87310 0.95688 1.43718 1.42050 1.20988 1.25176 1.20049 1.09655 0.93354 1.26187 0.94141 1.27206 0.95207 0.96522 1.07501 1.70903 1.41263 1.28177 1.15962 0.82933 0.75754 0.75282 0.72576 1.21745 1.20096 1.20400 1.21548 0.93203 0.94994 0.88046 1.24127 0.96579 0.86286 0.94299 1.20675 1.03453 0.90723 0.98228 1.84348 1.63803 1.21917 1.38117 0.92377 0.88284 0.93062 0.86227 0.86363 0.74863 0.92002 0.89409 0.90187 0.92791 0.93411 0.91522 0.93590 0.95843 0.93912 0.99587 0.94184 0.88201 0.87148 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 71.98 0.71 -0.52 16 2 C -0.03 -0.26 6.56 29.85 0.20 -0.06 16 3 C 0.20 4.12 7.56 88.39 0.67 4.78 16 4 N -0.48 -12.73 11.06 -293.04 -3.24 -15.97 16 5 C -0.10 -3.08 6.99 40.41 0.28 -2.80 16 6 C 0.60 20.85 7.77 86.66 0.67 21.53 16 7 O -0.56 -22.53 14.47 -4.07 -0.06 -22.59 16 8 N -0.70 -23.06 4.97 -446.97 -2.22 -25.29 16 9 C 0.15 5.61 2.27 44.75 0.10 5.71 16 10 H 0.07 2.80 6.75 -2.39 -0.02 2.79 16 11 C -0.11 -3.45 5.06 29.76 0.15 -3.30 16 12 C -0.10 -3.13 5.16 28.61 0.15 -2.98 16 13 C -0.13 -5.05 5.74 29.40 0.17 -4.88 16 14 C 0.14 6.88 4.89 87.38 0.43 7.30 16 15 N -0.60 -30.99 2.01 -697.67 -1.40 -32.39 16 16 C -0.36 -20.75 9.17 84.03 0.77 -19.98 16 17 H 0.04 2.36 7.97 -2.91 -0.02 2.33 16 18 C -0.07 -3.83 4.68 84.86 0.40 -3.43 16 19 N -0.92 -57.24 12.18 21.65 0.26 -56.98 16 20 Si 1.11 51.40 30.01 68.60 2.06 53.46 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 24 C 0.15 6.99 5.86 86.61 0.51 7.50 16 25 C 0.04 1.11 7.44 25.19 0.19 1.29 16 26 C -0.07 -1.48 9.88 71.24 0.70 -0.78 16 27 O -0.19 -4.23 10.73 0.46 0.00 -4.23 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.41 12.12 8.27 -92.71 -0.77 11.35 16 34 H 0.06 2.31 7.49 -2.39 -0.02 2.29 16 35 H 0.09 2.31 7.94 -2.39 -0.02 2.30 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 1.70 7.35 -2.39 -0.02 1.68 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.05 2.56 5.28 -2.39 -0.01 2.55 16 41 H 0.02 1.11 8.06 -2.39 -0.02 1.09 16 42 H 0.25 16.17 7.39 -92.71 -0.69 15.49 16 43 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H 0.04 1.92 7.86 -2.39 -0.02 1.90 16 45 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.10 2.31 6.48 -2.39 -0.02 2.30 16 Total: -1.00 -73.91 376.07 1.79 -72.12 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.29 Total: 22.47 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.09 Total: 9.40 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -6.60 Total: -130.64 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.06 Total: 53.46 kcal Total: -73.91 1.79 -72.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034443198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.447 kcal (2) G-P(sol) polarization free energy of solvation -73.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds