Wall clock time and date at job start Tue Mar 31 2020 13:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 O 1.33484 * 126.83007 * 270.02729 * 3 2 1 5 5 N 1.20657 * 113.15664 * 179.97438 * 4 3 2 6 6 C 1.30006 * 112.30248 * 359.97438 * 5 4 3 7 7 C 1.50700 * 127.33900 * 180.02562 * 6 5 4 8 8 C 1.37358 * 126.82391 * 89.71275 * 3 2 1 9 9 C 1.47394 * 128.56883 * 0.02562 * 8 3 2 10 10 O 1.21608 * 119.99762 * 90.00322 * 9 8 3 11 11 N 1.34773 * 120.00132 * 270.00496 * 9 8 3 12 12 C 1.46508 * 119.99774 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46782 * 35.00289 * 12 11 9 14 14 C 1.53005 * 109.46686 * 154.99840 * 12 11 9 15 15 C 1.53006 * 109.46627 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47306 * 299.99870 * 15 14 12 17 17 H 1.08996 * 109.47480 * 300.00702 * 16 15 14 18 18 N 1.46496 * 109.47067 * 179.97438 * 16 15 14 19 19 C 1.36945 * 120.00064 * 154.99842 * 18 16 15 20 20 H 1.08002 * 119.99398 * 0.02562 * 19 18 16 21 21 C 1.38803 * 120.00206 * 180.02562 * 19 18 16 22 22 N 1.31624 * 120.00174 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00135 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47460 * 89.99857 * 23 21 19 25 25 H 1.48495 * 109.47082 * 210.00166 * 23 21 19 26 26 H 1.48503 * 109.46946 * 329.99581 * 23 21 19 27 27 C 1.53005 * 109.46798 * 60.00431 * 16 15 14 28 28 C 1.52996 * 109.47158 * 274.99655 * 12 11 9 29 29 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 34 34 H 1.09005 * 109.47120 * 89.97533 * 7 6 5 35 35 H 1.08999 * 109.47681 * 209.97381 * 7 6 5 36 36 H 1.09003 * 109.46875 * 329.98052 * 7 6 5 37 37 H 0.97000 * 120.00288 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47236 * 300.00146 * 14 12 11 39 39 H 1.08994 * 109.47226 * 60.00166 * 14 12 11 40 40 H 1.08998 * 109.46693 * 60.00539 * 15 14 12 41 41 H 1.09003 * 109.46650 * 180.02562 * 15 14 12 42 42 H 0.97004 * 120.00431 * 335.00906 * 18 16 15 43 43 H 0.97003 * 119.99973 * 180.02562 * 22 21 19 44 44 H 1.08994 * 109.47386 * 59.99772 * 27 16 15 45 45 H 1.09001 * 109.46863 * 179.97438 * 27 16 15 46 46 H 1.08994 * 109.47338 * 300.00193 * 28 12 11 47 47 H 1.09003 * 109.46920 * 60.00608 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2986 2.1755 -1.0684 5 7 2.6890 3.2809 -0.7832 6 6 2.7537 3.4649 0.5021 7 6 3.1933 4.7114 1.2261 8 6 2.3016 2.1989 1.0995 9 6 2.1714 1.8507 2.5258 10 8 3.1108 1.3564 3.1191 11 7 1.0113 2.0800 3.1723 12 6 0.8819 1.7333 4.5899 13 1 1.8328 1.9050 5.0942 14 6 -0.2001 2.6046 5.2312 15 6 -0.3357 2.2421 6.7115 16 6 -0.7242 0.7680 6.8420 17 1 -1.6750 0.5967 6.3374 18 7 -0.8535 0.4208 8.2594 19 6 -1.6546 -0.6232 8.6383 20 1 -2.1908 -1.1907 7.8921 21 6 -1.7776 -0.9518 9.9813 22 7 -2.5472 -1.9556 10.3454 23 14 -0.8507 0.0304 11.2719 24 1 -1.6919 1.1657 11.7285 25 1 -0.5330 -0.8464 12.4274 26 1 0.4098 0.5527 10.6856 27 6 0.3578 -0.1032 6.2007 28 6 0.4937 0.2592 4.7210 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.3302 5.3540 1.4001 35 1 3.6411 4.4380 2.1815 36 1 3.9265 5.2439 0.6202 37 1 0.2621 2.4746 2.6992 38 1 0.0764 3.6548 5.1377 39 1 -1.1510 2.4330 4.7269 40 1 0.6151 2.4134 7.2160 41 1 -1.1069 2.8625 7.1682 42 1 -0.3717 0.9305 8.9296 43 1 -2.6334 -2.1850 11.2840 44 1 1.3086 0.0681 6.7053 45 1 0.0813 -1.1534 6.2942 46 1 -0.4572 0.0876 4.2167 47 1 1.2645 -0.3615 4.2642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034791731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:45 Heat of formation + Delta-G solvation = 12.301512 kcal Electronic energy + Delta-G solvation = -27433.970272 eV Core-core repulsion = 23619.420685 eV Total energy + Delta-G solvation = -3814.549587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.19778 -40.09623 -38.11747 -35.21791 -35.04870 -34.86623 -33.07353 -31.14356 -30.60415 -30.52121 -29.17054 -27.91168 -25.18602 -24.07862 -23.19046 -22.51220 -21.28431 -20.79271 -20.15660 -19.70008 -18.20655 -18.06721 -17.46947 -16.65077 -16.39079 -15.49490 -15.22600 -14.74389 -14.66158 -14.25147 -14.01902 -13.83813 -13.77613 -13.63076 -13.43183 -13.28061 -12.98060 -12.91432 -12.70373 -12.24000 -12.05317 -12.02682 -11.93366 -11.80140 -11.29476 -11.20403 -10.94691 -10.90571 -10.76884 -10.38449 -10.29422 -10.21136 -10.09501 -9.86964 -9.73790 -9.58372 -9.13895 -8.90112 -7.27058 -5.77517 -3.12933 0.96911 1.57466 2.17792 2.47340 3.02627 3.37416 3.40434 3.45427 3.76271 3.87627 4.41854 4.48825 4.58865 4.68084 4.71624 4.79857 4.84611 4.92104 5.06015 5.06975 5.09424 5.24594 5.34003 5.40740 5.42754 5.46331 5.50043 5.50749 5.57030 5.65482 5.70488 5.73198 5.74940 5.87444 6.04849 6.11312 6.13640 6.29991 6.40094 6.45656 6.58993 6.85824 7.01812 7.24909 7.88666 7.93643 7.99038 8.41818 9.20551 9.93316 10.13039 11.40880 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.002618 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.662684 B =10694.310173 C =11352.495705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C 0.024 3.976 4 O 0.097 5.903 5 N -0.357 5.357 6 C 0.054 3.946 7 C -0.079 4.079 8 C -0.251 4.251 9 C 0.599 3.401 10 O -0.522 6.522 11 N -0.712 5.712 12 C 0.144 3.856 13 H 0.089 0.911 14 C -0.118 4.118 15 C -0.124 4.124 16 C 0.182 3.818 17 H 0.055 0.945 18 N -0.750 5.750 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.133 4.133 28 C -0.124 4.124 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.400 0.600 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 11.129 -23.002 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.088 4.088 3 C -0.039 4.039 4 O 0.035 5.965 5 N -0.063 5.063 6 C -0.108 4.108 7 C -0.136 4.136 8 C -0.258 4.258 9 C 0.383 3.617 10 O -0.398 6.398 11 N -0.362 5.362 12 C 0.040 3.960 13 H 0.107 0.893 14 C -0.157 4.157 15 C -0.163 4.163 16 C 0.072 3.928 17 H 0.073 0.927 18 N -0.391 5.391 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.174 4.174 28 C -0.163 4.163 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.451 11.322 -23.595 27.502 hybrid contribution 0.273 0.478 1.494 1.592 sum 8.725 11.800 -22.102 26.530 Atomic orbital electron populations 1.21797 0.92600 1.03514 1.02875 1.20307 0.97251 0.85720 1.05521 1.24711 0.97898 0.96259 0.85081 1.84531 1.61585 1.17376 1.32986 1.73619 1.17413 0.98708 1.16595 1.24754 1.00452 0.96580 0.89023 1.20239 1.02301 0.91255 0.99806 1.21969 1.13024 0.95514 0.95280 1.16848 0.82975 0.78051 0.83846 1.90855 1.38808 1.42877 1.67215 1.46133 1.14262 1.63565 1.12239 1.21206 1.00314 0.95402 0.79031 0.89257 1.21738 0.98255 0.98714 0.96987 1.21797 1.01924 0.98417 0.94171 1.20213 0.96150 0.90485 0.85903 0.92666 1.42798 1.56231 1.38454 1.01666 1.19070 1.19103 1.06127 0.92860 0.89237 1.24675 0.99630 0.98137 0.96787 1.69703 1.42286 1.30193 1.16093 0.86553 0.79976 0.79789 0.82237 1.21139 1.21815 1.20279 1.22186 1.00636 1.01903 0.92638 1.21887 1.01148 0.94583 0.98676 0.91920 0.90581 0.91834 0.88075 0.88574 0.89574 0.89665 0.89889 0.76625 0.91712 0.91267 0.92044 0.91187 0.80689 0.93089 0.92571 0.91221 0.91970 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.47 16 2 C -0.05 -0.33 6.38 -27.88 -0.18 -0.51 16 3 C 0.02 0.22 6.80 -34.62 -0.24 -0.01 16 4 O 0.10 0.98 11.06 18.67 0.21 1.19 16 5 N -0.36 -3.97 12.01 34.78 0.42 -3.56 16 6 C 0.05 0.56 7.59 -79.77 -0.61 -0.05 16 7 C -0.08 -0.59 10.49 36.01 0.38 -0.21 16 8 C -0.25 -2.64 6.24 -102.89 -0.64 -3.29 16 9 C 0.60 7.11 7.57 -12.54 -0.09 7.01 16 10 O -0.52 -8.30 16.77 5.27 0.09 -8.21 16 11 N -0.71 -6.93 5.07 -54.89 -0.28 -7.21 16 12 C 0.14 1.67 2.46 -67.93 -0.17 1.50 16 13 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 14 C -0.12 -1.26 5.39 -26.73 -0.14 -1.40 16 15 C -0.12 -1.74 5.39 -26.73 -0.14 -1.88 16 16 C 0.18 3.24 2.77 -67.93 -0.19 3.05 16 17 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 18 N -0.75 -17.13 4.92 -53.43 -0.26 -17.39 16 19 C -0.24 -6.66 10.41 -15.06 -0.16 -6.81 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 22 N -0.93 -29.12 13.97 55.49 0.78 -28.35 16 23 Si 0.88 21.92 27.74 -169.99 -4.71 17.21 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 27 C -0.13 -2.22 5.50 -26.75 -0.15 -2.36 16 28 C -0.12 -1.63 5.49 -26.76 -0.15 -1.78 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 2.93 8.59 -40.82 -0.35 2.58 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.36 8.16 5.66 -40.82 -0.23 7.93 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -33.76 386.67 -7.89 -41.65 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.75 Total: 6.05 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.20 Total: -7.21 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.65 Total: -56.50 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.29 Total: -7.02 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.76 -7.89 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034791731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.952 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds