Wall clock time and date at job start Tue Mar 31 2020 13:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.46996 * 2 1 4 4 N 1.29935 * 125.37740 * 90.00478 * 3 2 1 5 5 C 1.36063 * 108.47870 * 179.97438 * 4 3 2 6 6 C 1.47420 * 126.44823 * 179.97438 * 5 4 3 7 7 O 1.21615 * 120.00159 * 186.74896 * 6 5 4 8 8 N 1.34777 * 120.00244 * 6.46592 * 6 5 4 9 9 C 1.46920 * 120.63254 * 186.92342 * 8 6 5 10 10 C 1.53191 * 108.77618 * 233.58851 * 9 8 6 11 11 C 1.53043 * 109.31334 * 305.36414 * 10 9 8 12 12 H 1.08994 * 109.46331 * 301.34283 * 11 10 9 13 13 N 1.46504 * 109.46083 * 181.38471 * 11 10 9 14 14 C 1.36933 * 119.99974 * 84.99842 * 13 11 10 15 15 H 1.08000 * 120.00265 * 0.02562 * 14 13 11 16 16 C 1.38806 * 120.00022 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99917 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 120.00091 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47218 * 90.00329 * 18 16 14 20 20 H 1.48498 * 109.46806 * 210.00340 * 18 16 14 21 21 H 1.48496 * 109.46851 * 330.00113 * 18 16 14 22 22 C 1.53037 * 109.53564 * 61.36595 * 11 10 9 23 23 H 1.09000 * 109.49797 * 58.58557 * 22 11 10 24 24 C 1.52996 * 109.49900 * 178.65115 * 22 11 10 25 25 C 1.46924 * 120.62647 * 6.64725 * 8 6 5 26 26 C 1.36089 * 107.10119 * 0.23852 * 5 4 3 27 27 C 1.50707 * 126.52239 * 179.75864 * 26 5 4 28 28 O 1.34049 * 125.37950 * 269.97479 * 3 2 1 29 29 H 1.09003 * 109.47094 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47017 * 299.99888 * 1 2 3 31 31 H 1.09002 * 109.46982 * 59.99606 * 1 2 3 32 32 H 1.09001 * 109.46814 * 240.00201 * 2 1 3 33 33 H 1.09002 * 109.46982 * 120.00394 * 2 1 3 34 34 H 1.09005 * 109.58942 * 353.37732 * 9 8 6 35 35 H 1.08999 * 109.58772 * 113.79978 * 9 8 6 36 36 H 1.09007 * 109.49917 * 65.31957 * 10 9 8 37 37 H 1.09003 * 109.50009 * 185.41370 * 10 9 8 38 38 H 0.97006 * 119.99815 * 265.00323 * 13 11 10 39 39 H 0.97007 * 120.00113 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.47284 * 59.99788 * 24 22 11 41 41 H 1.09002 * 109.47641 * 180.02562 * 24 22 11 42 42 H 1.09008 * 109.47032 * 299.99856 * 24 22 11 43 43 H 1.09002 * 109.58987 * 246.19404 * 25 8 6 44 44 H 1.09002 * 109.59189 * 6.62804 * 25 8 6 45 45 H 1.08995 * 109.46785 * 90.00504 * 27 26 5 46 46 H 1.09002 * 109.46826 * 209.99951 * 27 26 5 47 47 H 1.09000 * 109.47064 * 329.99954 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7176 3.3572 0.6639 6 6 3.1116 4.4724 1.5440 7 8 3.3661 5.5621 1.0678 8 7 3.1842 4.2858 2.8768 9 6 3.4265 5.4196 3.7793 10 6 4.6282 5.0917 4.6711 11 6 4.3800 3.7614 5.3858 12 1 3.4688 3.8325 5.9795 13 7 5.5128 3.4609 6.2650 14 6 5.5546 3.9826 7.5303 15 1 4.7524 4.6152 7.8804 16 6 6.6276 3.6975 8.3635 17 7 7.6051 2.9261 7.9371 18 14 6.6843 4.4086 10.0900 19 1 6.0231 3.4716 11.0333 20 1 8.0985 4.6058 10.4978 21 1 5.9764 5.7138 10.1111 22 6 4.2281 2.6447 4.3504 23 1 5.1295 2.5894 3.7400 24 6 4.0136 1.3099 5.0666 25 6 3.0163 2.9457 3.4553 26 6 2.7143 3.3635 -0.6969 27 6 3.1129 4.5105 -1.5895 28 8 2.2915 2.1524 -1.0930 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.6394 6.3139 3.1936 35 1 2.5462 5.5876 4.3996 36 1 5.5259 5.0134 4.0578 37 1 4.7596 5.8825 5.4097 38 1 6.2332 2.8924 5.9506 39 1 8.3548 2.7265 8.5194 40 1 3.1116 1.3653 5.6758 41 1 3.9059 0.5148 4.3288 42 1 4.8712 1.0984 5.7054 43 1 2.1032 2.9160 4.0498 44 1 2.9585 2.2071 2.6557 45 1 4.1787 4.4470 -1.8087 46 1 2.5471 4.4605 -2.5199 47 1 2.9010 5.4536 -1.0857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036214727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:44 Heat of formation + Delta-G solvation = -24.657184 kcal Electronic energy + Delta-G solvation = -28041.751157 eV Core-core repulsion = 24225.598921 eV Total energy + Delta-G solvation = -3816.152236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.57046 -41.18095 -39.06876 -36.45102 -35.95157 -35.09327 -34.23850 -33.12224 -32.57964 -31.26496 -28.31587 -27.58549 -26.71233 -25.60238 -24.41721 -23.70694 -23.06679 -22.01457 -21.27545 -20.35783 -19.15282 -18.51014 -18.06365 -17.34476 -16.86990 -16.70225 -16.16787 -15.71961 -15.68285 -15.49416 -15.46659 -15.01204 -14.71815 -14.52302 -14.24350 -14.13358 -13.98044 -13.89176 -13.49896 -13.35863 -13.14164 -12.96840 -12.85881 -12.76065 -12.58686 -12.55624 -12.33682 -12.16209 -12.02632 -12.01321 -11.84900 -11.74485 -11.57672 -11.32563 -10.90650 -10.62336 -9.96991 -9.60735 -8.97646 -7.91853 -5.19659 -0.01415 0.88801 1.41034 1.47594 1.48750 1.56941 1.88380 2.12980 2.57120 2.77819 3.40637 3.44816 3.56858 3.80936 3.81995 4.07511 4.08429 4.13248 4.24093 4.26258 4.31673 4.35052 4.38034 4.47439 4.53681 4.55601 4.69341 4.75370 4.80692 4.85942 4.88025 4.96714 5.00730 5.03162 5.05516 5.11487 5.15214 5.28805 5.29148 5.37543 5.44719 5.52098 5.57349 5.67619 6.24380 6.29727 6.47668 6.97704 7.35975 8.11309 8.35826 9.31689 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.003122 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.493861 B = 8966.723168 C = 9899.257968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.028 4.028 3 C 0.203 3.797 4 N -0.473 5.473 5 C -0.101 4.101 6 C 0.595 3.405 7 O -0.566 6.566 8 N -0.592 5.592 9 C 0.120 3.880 10 C -0.138 4.138 11 C 0.179 3.821 12 H 0.047 0.953 13 N -0.730 5.730 14 C -0.233 4.233 15 H 0.075 0.925 16 C -0.076 4.076 17 N -0.970 5.970 18 Si 0.969 3.031 19 H -0.287 1.287 20 H -0.299 1.299 21 H -0.271 1.271 22 C -0.099 4.099 23 H 0.048 0.952 24 C -0.124 4.124 25 C 0.098 3.902 26 C 0.045 3.955 27 C -0.076 4.076 28 O -0.194 6.194 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.371 0.629 39 H 0.249 0.751 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.145 0.855 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.234 -5.649 -21.603 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.005 4.005 4 N -0.202 5.202 5 C -0.219 4.219 6 C 0.384 3.616 7 O -0.446 6.446 8 N -0.322 5.322 9 C -0.002 4.002 10 C -0.179 4.179 11 C 0.071 3.929 12 H 0.065 0.935 13 N -0.369 5.369 14 C -0.365 4.365 15 H 0.093 0.907 16 C -0.268 4.268 17 N -0.621 5.621 18 Si 0.799 3.201 19 H -0.214 1.214 20 H -0.226 1.226 21 H -0.196 1.196 22 C -0.119 4.119 23 H 0.067 0.933 24 C -0.182 4.182 25 C -0.024 4.024 26 C -0.012 4.012 27 C -0.132 4.132 28 O -0.081 6.081 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.203 0.797 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.162 0.838 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.239 -5.183 -21.053 27.089 hybrid contribution 1.065 0.607 0.721 1.422 sum -15.174 -4.576 -20.332 25.780 Atomic orbital electron populations 1.21780 0.92134 1.04346 1.02240 1.20460 0.97443 0.81438 1.07217 1.27318 0.97654 0.97868 0.77693 1.70464 1.17437 1.02639 1.29709 1.21340 1.13019 0.94694 0.92852 1.17060 0.76870 0.85924 0.81735 1.90715 1.52579 1.26218 1.75113 1.48001 1.68789 1.10349 1.05072 1.21641 0.98148 0.88921 0.91507 1.22455 0.96948 1.00396 0.98108 1.20435 0.90369 0.92078 0.90059 0.93525 1.42575 1.23122 1.58964 1.12245 1.19596 1.03593 1.22702 0.90602 0.90690 1.25493 0.97280 1.01740 1.02259 1.69822 1.11637 1.43257 1.37426 0.85199 0.76175 0.78264 0.80502 1.21421 1.22571 1.19555 1.21699 0.97976 0.96150 0.96098 0.93330 1.21525 1.01515 0.95400 0.99795 1.22812 0.96508 0.83717 0.99412 1.24109 0.96629 0.86249 0.94167 1.20701 1.03540 0.90752 0.98183 1.84355 1.63880 1.21846 1.38038 0.88496 0.93003 0.92378 0.86301 0.86255 0.89633 0.89894 0.94234 0.91802 0.79734 0.94207 0.92449 0.91106 0.94267 0.90941 0.83846 0.88071 0.87360 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.90 71.98 0.71 -0.47 16 2 C -0.03 -0.26 6.56 29.85 0.20 -0.07 16 3 C 0.20 3.82 7.56 88.39 0.67 4.49 16 4 N -0.47 -11.61 7.81 -293.05 -2.29 -13.90 16 5 C -0.10 -2.79 6.68 40.41 0.27 -2.52 16 6 C 0.60 19.19 7.67 86.66 0.67 19.85 16 7 O -0.57 -19.85 14.20 -4.08 -0.06 -19.91 16 8 N -0.59 -18.81 2.97 -821.94 -2.44 -21.25 16 9 C 0.12 3.85 6.44 86.36 0.56 4.41 16 10 C -0.14 -5.25 5.66 30.67 0.17 -5.08 16 11 C 0.18 7.24 2.19 45.02 0.10 7.34 16 12 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 13 N -0.73 -37.06 4.41 -322.82 -1.42 -38.48 16 14 C -0.23 -12.93 9.93 84.03 0.83 -12.10 16 15 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 16 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 17 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 18 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.10 -3.42 2.47 -10.57 -0.03 -3.45 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 C -0.12 -4.06 9.03 71.98 0.65 -3.41 16 25 C 0.10 2.89 5.43 86.51 0.47 3.36 16 26 C 0.05 1.03 7.44 25.19 0.19 1.21 16 27 C -0.08 -1.28 9.95 71.24 0.71 -0.57 16 28 O -0.19 -3.85 10.73 0.38 0.00 -3.85 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 2.77 7.00 -2.38 -0.02 2.75 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.37 20.50 7.50 -92.70 -0.70 19.81 16 39 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.04 1.54 7.36 -2.38 -0.02 1.52 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.14 4.05 4.07 -22.29 -0.09 3.96 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.10 2.05 6.37 -2.39 -0.02 2.03 16 Total: -1.00 -70.96 376.95 2.94 -68.03 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.20 Total: 31.30 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.63 Total: 9.10 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -5.87 Total: -133.30 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -70.96 2.94 -68.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036214727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.369 kcal (2) G-P(sol) polarization free energy of solvation -70.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds