Wall clock time and date at job start Tue Mar 31 2020 13:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46952 * 2 1 4 4 N 1.30014 * 127.33500 * 270.14821 * 3 2 1 5 5 O 1.20658 * 112.30016 * 180.27778 * 4 3 2 6 6 C 1.33499 * 113.15786 * 359.73512 * 5 4 3 7 7 C 1.50697 * 126.83040 * 180.02562 * 6 5 4 8 8 C 1.37365 * 106.33903 * 359.97438 * 6 5 4 9 9 C 1.47393 * 128.56209 * 179.97438 * 8 6 5 10 10 O 1.21610 * 119.99872 * 90.02636 * 9 8 6 11 11 N 1.34770 * 120.00408 * 270.02582 * 9 8 6 12 12 C 1.46931 * 120.62942 * 359.97438 * 11 9 8 13 13 C 1.53187 * 108.77858 * 233.58820 * 12 11 9 14 14 C 1.53036 * 109.33909 * 305.34763 * 13 12 11 15 15 H 1.09003 * 109.46509 * 301.36375 * 14 13 12 16 16 N 1.46501 * 109.46507 * 181.40161 * 14 13 12 17 17 C 1.36934 * 120.00105 * 84.99454 * 16 14 13 18 18 H 1.08005 * 119.99984 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00024 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99997 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47052 * 89.99769 * 21 19 17 23 23 H 1.48487 * 109.47190 * 210.00271 * 21 19 17 24 24 H 1.48502 * 109.46996 * 330.00397 * 21 19 17 25 25 C 1.53109 * 109.50477 * 61.34678 * 14 13 12 26 26 H 1.08999 * 109.51108 * 58.63043 * 25 14 13 27 27 C 1.52997 * 109.49235 * 178.70090 * 25 14 13 28 28 C 1.46925 * 120.63591 * 179.97438 * 11 9 8 29 29 H 1.08996 * 109.47236 * 59.99224 * 1 2 3 30 30 H 1.08996 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46803 * 300.00265 * 1 2 3 32 32 H 1.08996 * 109.47033 * 239.99930 * 2 1 3 33 33 H 1.08999 * 109.47159 * 120.00016 * 2 1 3 34 34 H 1.09007 * 109.46761 * 269.99304 * 7 6 5 35 35 H 1.09000 * 109.47337 * 29.99185 * 7 6 5 36 36 H 1.09000 * 109.47282 * 149.99869 * 7 6 5 37 37 H 1.09004 * 109.58377 * 113.79779 * 12 11 9 38 38 H 1.09007 * 109.58589 * 353.37902 * 12 11 9 39 39 H 1.09002 * 109.49796 * 65.31697 * 13 12 11 40 40 H 1.09000 * 109.49812 * 185.38420 * 13 12 11 41 41 H 0.96998 * 120.00039 * 265.00785 * 16 14 13 42 42 H 0.97000 * 119.99887 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.47697 * 179.85822 * 27 25 14 44 44 H 1.09009 * 109.46760 * 299.85626 * 27 25 14 45 45 H 1.08995 * 109.47470 * 59.85271 * 27 25 14 46 46 H 1.08995 * 109.58986 * 246.19918 * 28 11 9 47 47 H 1.08997 * 109.58553 * 6.48618 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2926 2.1651 -1.0337 5 8 2.6869 3.2617 -0.7208 6 6 2.7520 3.4388 0.6008 7 6 3.1990 4.6826 1.3246 8 6 2.3293 2.2621 1.1697 9 6 2.2096 1.9235 2.5992 10 8 1.1691 2.1401 3.1903 11 7 3.2532 1.3740 3.2513 12 6 4.5165 1.1058 2.5507 13 6 4.8934 -0.3643 2.7588 14 6 4.9295 -0.6709 4.2577 15 1 5.6518 -0.0161 4.7452 16 7 5.3223 -2.0675 4.4610 17 6 6.6482 -2.4082 4.4928 18 1 7.4044 -1.6472 4.3684 19 6 7.0204 -3.7316 4.6849 20 7 6.0989 -4.6591 4.8359 21 14 8.8292 -4.1962 4.7289 22 1 9.3278 -4.1129 6.1252 23 1 8.9965 -5.5831 4.2255 24 1 9.6013 -3.2617 3.8712 25 6 3.5417 -0.4373 4.8608 26 1 2.8141 -1.0740 4.3574 27 6 3.5700 -0.7749 6.3528 28 6 3.1493 1.0316 4.6763 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.2742 4.6354 1.4981 35 1 2.9668 5.5587 0.7191 36 1 2.6797 4.7534 2.2803 37 1 5.3014 1.7451 2.9550 38 1 4.3932 1.3043 1.4859 39 1 4.1534 -1.0016 2.2747 40 1 5.8755 -0.5530 2.3252 41 1 4.6432 -2.7510 4.5729 42 1 6.3590 -5.5839 4.9698 43 1 2.5825 -0.6061 6.7824 44 1 3.8491 -1.8206 6.4834 45 1 4.2985 -0.1389 6.8555 46 1 3.8225 1.6647 5.2543 47 1 2.1244 1.1833 5.0148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036290497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:47 Heat of formation + Delta-G solvation = 22.935523 kcal Electronic energy + Delta-G solvation = -28446.092895 eV Core-core repulsion = 24632.004434 eV Total energy + Delta-G solvation = -3814.088462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.01295 -40.11374 -37.72063 -35.45595 -34.67851 -33.84338 -32.78949 -31.54423 -31.45195 -29.40202 -28.37701 -26.70495 -25.39598 -24.64507 -23.66445 -22.62814 -21.72319 -20.42574 -19.80054 -19.22443 -18.00047 -17.49631 -17.11421 -16.57851 -16.00114 -15.20599 -15.00788 -14.62767 -14.39100 -14.18422 -13.83137 -13.78216 -13.63426 -13.54961 -13.37127 -13.02182 -12.95424 -12.67725 -12.49282 -12.34119 -11.81922 -11.74748 -11.68132 -11.62906 -11.25759 -10.99968 -10.97010 -10.86392 -10.69549 -10.47389 -10.24190 -10.21539 -9.97768 -9.79711 -9.67696 -9.47133 -8.94808 -8.60176 -7.01401 -5.81863 -3.10790 1.15306 1.79154 2.32830 2.67555 3.08624 3.39323 3.44795 3.46482 3.89153 4.08696 4.47754 4.53557 4.71560 4.92767 5.00699 5.06049 5.07973 5.10564 5.15865 5.18375 5.25756 5.29036 5.32418 5.46814 5.53824 5.59011 5.62801 5.70414 5.72386 5.74549 5.88383 5.89197 6.01211 6.05411 6.09505 6.25054 6.30849 6.37823 6.45160 6.55755 6.75054 6.86371 6.98753 7.34594 7.64382 8.04800 8.08949 8.36240 9.47929 10.04727 10.39570 11.40533 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.003485 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.684903 B = 8033.520502 C = 8311.583066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.062 3.938 4 N -0.355 5.355 5 O 0.095 5.905 6 C 0.010 3.990 7 C -0.077 4.077 8 C -0.239 4.239 9 C 0.599 3.401 10 O -0.534 6.534 11 N -0.593 5.593 12 C 0.109 3.891 13 C -0.151 4.151 14 C 0.184 3.816 15 H 0.049 0.951 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.904 3.096 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.110 4.110 26 H 0.070 0.930 27 C -0.136 4.136 28 C 0.120 3.880 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 16.645 -6.523 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.101 4.101 4 N -0.061 5.061 5 O 0.033 5.967 6 C -0.054 4.054 7 C -0.135 4.135 8 C -0.246 4.246 9 C 0.385 3.615 10 O -0.411 6.411 11 N -0.325 5.325 12 C -0.014 4.014 13 C -0.192 4.192 14 C 0.074 3.926 15 H 0.066 0.934 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.735 3.265 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.130 4.130 26 H 0.088 0.912 27 C -0.194 4.194 28 C -0.002 4.002 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.952 16.559 -7.504 19.844 hybrid contribution 0.905 -0.748 0.653 1.344 sum -7.047 15.811 -6.851 18.617 Atomic orbital electron populations 1.21721 0.93476 1.02653 1.02551 1.20030 0.96837 0.87365 1.04487 1.24765 1.00295 0.98641 0.86363 1.73601 1.16569 0.92578 1.23313 1.84526 1.62658 1.26967 1.22518 1.24567 0.99256 0.97732 0.83825 1.20446 1.02854 0.90807 0.99358 1.21873 1.11962 0.95346 0.95422 1.16913 0.83281 0.77456 0.83888 1.90796 1.28330 1.54146 1.67873 1.48109 1.13195 1.59867 1.11297 1.21862 0.84524 0.98580 0.96456 1.22692 1.02118 0.92727 1.01656 1.20201 0.92497 0.88562 0.91354 0.93350 1.42394 1.05178 1.02129 1.86298 1.19203 0.83753 0.92347 1.41775 0.91252 1.24717 0.97302 0.95920 1.02755 1.69653 1.31360 1.00730 1.56203 0.86237 0.85030 0.77570 0.77617 1.21734 1.21822 1.20810 1.21751 0.99014 0.94555 0.97664 0.91186 1.21656 1.00152 1.03569 0.93986 1.21780 1.03009 0.96050 0.79378 0.92491 0.91279 0.91924 0.89405 0.89163 0.88698 0.89171 0.88838 0.91236 0.90952 0.92198 0.90496 0.78195 0.93491 0.93760 0.90685 0.93000 0.91228 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.89 37.16 0.37 -1.21 16 2 C -0.05 -0.58 6.55 -27.88 -0.18 -0.76 16 3 C 0.06 0.82 6.79 -79.77 -0.54 0.27 16 4 N -0.35 -4.78 12.01 34.78 0.42 -4.36 16 5 O 0.10 1.14 11.06 18.64 0.21 1.35 16 6 C 0.01 0.10 7.55 -34.63 -0.26 -0.16 16 7 C -0.08 -0.53 10.33 36.00 0.37 -0.16 16 8 C -0.24 -3.12 4.19 -102.89 -0.43 -3.55 16 9 C 0.60 8.66 7.48 -12.54 -0.09 8.57 16 10 O -0.53 -9.22 16.52 5.27 0.09 -9.14 16 11 N -0.59 -8.01 2.97 -174.07 -0.52 -8.53 16 12 C 0.11 1.40 6.34 -3.71 -0.02 1.38 16 13 C -0.15 -2.43 5.66 -26.62 -0.15 -2.58 16 14 C 0.18 3.32 2.20 -67.85 -0.15 3.17 16 15 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 16 N -0.72 -16.69 4.41 -53.35 -0.24 -16.93 16 17 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 18 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 21 Si 0.90 21.67 29.55 -169.99 -5.02 16.64 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.11 -1.71 2.46 -90.48 -0.22 -1.93 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 27 C -0.14 -2.09 9.02 37.16 0.34 -1.76 16 28 C 0.12 1.63 5.72 -3.73 -0.02 1.61 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.90 6.30 -51.92 -0.33 0.57 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.38 9.66 7.51 -40.82 -0.31 9.35 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.38 7.37 -51.92 -0.38 0.99 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -31.02 385.01 -7.47 -38.49 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.69 Total: 7.01 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.25 Total: -3.92 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.39 Total: -56.24 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.29 Total: -7.79 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.02 -7.47 -38.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036290497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.423 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds