Wall clock time and date at job start Tue Mar 31 2020 13:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46988 * 2 1 4 4 N 1.30019 * 127.33246 * 270.13827 * 3 2 1 5 5 O 1.20654 * 112.30074 * 180.30502 * 4 3 2 6 6 C 1.33492 * 113.15757 * 359.71496 * 5 4 3 7 7 C 1.50699 * 126.83098 * 180.02562 * 6 5 4 8 8 C 1.37355 * 106.34085 * 0.02562 * 6 5 4 9 9 C 1.47400 * 128.56390 * 179.97438 * 8 6 5 10 10 O 1.21610 * 119.99971 * 90.02454 * 9 8 6 11 11 N 1.34774 * 119.99979 * 270.02178 * 9 8 6 12 12 C 1.46932 * 120.63169 * 0.02562 * 11 9 8 13 13 C 1.53191 * 108.77370 * 126.36891 * 12 11 9 14 14 C 1.53041 * 109.31423 * 54.63702 * 13 12 11 15 15 H 1.08993 * 109.45991 * 58.63937 * 14 13 12 16 16 N 1.46505 * 109.45884 * 178.61367 * 14 13 12 17 17 C 1.36931 * 119.99788 * 274.99856 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.53048 * 109.53688 * 298.63077 * 14 13 12 26 26 H 1.08998 * 109.49515 * 301.41378 * 25 14 13 27 27 C 1.52991 * 109.49560 * 181.31780 * 25 14 13 28 28 C 1.46933 * 120.63100 * 179.97438 * 11 9 8 29 29 H 1.09001 * 109.46580 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47135 * 300.00358 * 1 2 3 31 31 H 1.09000 * 109.46988 * 60.00793 * 1 2 3 32 32 H 1.08997 * 109.47652 * 239.99555 * 2 1 3 33 33 H 1.09000 * 109.46988 * 119.99207 * 2 1 3 34 34 H 1.09003 * 109.47359 * 269.97526 * 7 6 5 35 35 H 1.09001 * 109.46920 * 29.97633 * 7 6 5 36 36 H 1.09003 * 109.47334 * 149.97763 * 7 6 5 37 37 H 1.08996 * 109.58299 * 6.58222 * 12 11 9 38 38 H 1.09001 * 109.58392 * 246.15381 * 12 11 9 39 39 H 1.09000 * 109.49722 * 294.68226 * 13 12 11 40 40 H 1.08996 * 109.49455 * 174.58923 * 13 12 11 41 41 H 0.97000 * 119.99792 * 94.99650 * 16 14 13 42 42 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47432 * 60.00304 * 27 25 14 44 44 H 1.09000 * 109.47170 * 179.97438 * 27 25 14 45 45 H 1.08999 * 109.47579 * 300.00331 * 27 25 14 46 46 H 1.08995 * 109.58701 * 353.41917 * 28 11 9 47 47 H 1.08997 * 109.58678 * 113.84731 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2928 2.1651 -1.0338 5 8 2.6875 3.2614 -0.7209 6 6 2.7524 3.4386 0.6006 7 6 3.1999 4.6824 1.3244 8 6 2.3302 2.2619 1.1695 9 6 2.2105 1.9234 2.5991 10 8 1.1699 2.1396 3.1901 11 7 3.2543 1.3743 3.2513 12 6 4.5182 1.1075 2.5510 13 6 5.6611 1.7692 3.3273 14 6 5.6330 1.2862 4.7792 15 1 5.7298 0.2008 4.8027 16 7 6.7449 1.8915 5.5165 17 6 7.9844 1.3103 5.4849 18 1 8.1425 0.4060 4.9160 19 6 9.0393 1.8871 6.1788 20 7 8.8468 2.9895 6.8716 21 14 10.7320 1.0985 6.1294 22 1 11.2125 1.0455 4.7253 23 1 11.6764 1.9021 6.9463 24 1 10.6524 -0.2792 6.6777 25 6 4.3086 1.6939 5.4287 26 1 4.1995 2.7775 5.3833 27 6 4.2950 1.2394 6.8894 28 6 3.1505 1.0320 4.6764 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 4.2749 4.6346 1.4984 35 1 2.9685 5.5584 0.7185 36 1 2.6801 4.7537 2.2798 37 1 4.4724 1.5221 1.5439 38 1 4.6868 0.0319 2.4984 39 1 5.5393 2.8520 3.3016 40 1 6.6141 1.4990 2.8723 41 1 6.6030 2.7040 6.0271 42 1 9.5838 3.3923 7.3568 43 1 5.1210 1.7088 7.4238 44 1 3.3517 1.5304 7.3517 45 1 4.4027 0.1557 6.9339 46 1 2.2024 1.3966 5.0716 47 1 3.2074 -0.0498 4.7974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036290500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:58 Heat of formation + Delta-G solvation = 22.959288 kcal Electronic energy + Delta-G solvation = -28364.581868 eV Core-core repulsion = 24550.494436 eV Total energy + Delta-G solvation = -3814.087431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.01388 -40.11189 -37.72563 -35.51143 -34.68058 -33.81502 -32.78517 -31.56112 -31.49641 -29.41444 -28.31240 -26.69417 -25.41289 -24.69951 -23.66999 -22.64631 -21.72402 -20.41047 -19.92930 -19.11686 -18.00031 -17.51964 -17.13337 -16.55855 -15.99517 -15.18356 -15.02696 -14.70176 -14.45969 -14.17410 -13.84245 -13.74511 -13.63014 -13.47571 -13.37365 -13.01241 -12.91928 -12.73857 -12.49687 -12.32927 -11.84696 -11.82619 -11.72517 -11.64800 -11.26116 -11.06096 -10.97428 -10.86372 -10.69921 -10.47515 -10.27551 -10.22926 -10.01230 -9.80272 -9.67983 -9.44187 -8.94814 -8.59937 -7.02179 -5.82421 -3.11321 1.17663 1.76018 2.34574 2.66821 3.09928 3.39386 3.44528 3.45295 3.84741 4.07741 4.46917 4.53389 4.74577 4.87776 4.97499 4.99289 5.06938 5.12035 5.17912 5.20792 5.25322 5.30094 5.36782 5.46628 5.54235 5.56925 5.62280 5.63228 5.70974 5.74800 5.78169 5.88706 5.94889 6.00896 6.08678 6.23997 6.30589 6.37301 6.44885 6.54620 6.74546 6.85971 6.97746 7.34984 7.63546 8.05330 8.07288 8.35752 9.47375 10.04054 10.38991 11.39881 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.003362 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.716403 B = 8326.169334 C = 8784.706319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.056 3.944 4 N -0.355 5.355 5 O 0.095 5.905 6 C 0.019 3.981 7 C -0.081 4.081 8 C -0.243 4.243 9 C 0.599 3.401 10 O -0.534 6.534 11 N -0.593 5.593 12 C 0.109 3.891 13 C -0.150 4.150 14 C 0.184 3.816 15 H 0.048 0.952 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.109 4.109 26 H 0.070 0.930 27 C -0.136 4.136 28 C 0.120 3.880 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.378 -2.386 -11.585 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.106 4.106 4 N -0.061 5.061 5 O 0.033 5.967 6 C -0.045 4.045 7 C -0.138 4.138 8 C -0.250 4.250 9 C 0.385 3.615 10 O -0.412 6.412 11 N -0.325 5.325 12 C -0.014 4.014 13 C -0.192 4.192 14 C 0.073 3.927 15 H 0.066 0.934 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.129 4.129 26 H 0.088 0.912 27 C -0.194 4.194 28 C -0.002 4.002 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.805 -2.539 -12.573 19.588 hybrid contribution 1.112 -0.176 0.789 1.375 sum -13.692 -2.715 -11.784 18.268 Atomic orbital electron populations 1.21729 0.93501 1.02496 1.02783 1.19983 0.96841 0.87511 1.04056 1.24720 1.00733 0.98622 0.86531 1.73590 1.16514 0.92652 1.23371 1.84526 1.62608 1.26881 1.22651 1.24630 0.98429 0.97798 0.83599 1.20507 1.03311 0.90652 0.99344 1.21845 1.12371 0.95404 0.95355 1.16909 0.83400 0.77253 0.83926 1.90795 1.28548 1.53950 1.67878 1.48108 1.12910 1.60328 1.11122 1.21860 0.83161 1.00692 0.95715 1.22695 0.96700 1.00522 0.99244 1.20193 0.86914 0.96416 0.89132 0.93368 1.42386 1.05444 1.30560 1.57592 1.19161 0.86432 1.06272 1.25277 0.91306 1.24720 0.98063 0.97662 1.00255 1.69643 1.31507 1.20842 1.35991 0.86308 0.84371 0.78382 0.77352 1.21314 1.21734 1.21283 1.21737 0.94955 1.00511 0.95742 0.91169 1.21656 1.01540 1.01313 0.94879 1.21783 1.00200 0.99723 0.78538 0.91436 0.91817 0.92389 0.89528 0.89492 0.88289 0.89112 0.88695 0.90951 0.91290 0.92168 0.90490 0.78192 0.93436 0.90671 0.93758 0.93004 0.89155 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.05 -0.45 6.55 -27.88 -0.18 -0.63 16 3 C 0.06 0.70 6.84 -79.77 -0.55 0.15 16 4 N -0.36 -4.66 12.01 34.78 0.42 -4.24 16 5 O 0.09 1.17 11.06 18.66 0.21 1.38 16 6 C 0.02 0.22 7.44 -34.63 -0.26 -0.04 16 7 C -0.08 -0.71 10.33 36.01 0.37 -0.34 16 8 C -0.24 -3.17 4.23 -102.90 -0.43 -3.60 16 9 C 0.60 8.67 7.49 -12.53 -0.09 8.58 16 10 O -0.53 -9.24 16.52 5.27 0.09 -9.15 16 11 N -0.59 -8.02 2.97 -174.07 -0.52 -8.54 16 12 C 0.11 1.40 6.34 -3.71 -0.02 1.38 16 13 C -0.15 -2.37 5.66 -26.61 -0.15 -2.52 16 14 C 0.18 3.27 2.19 -67.88 -0.15 3.13 16 15 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 16 N -0.72 -16.51 4.41 -53.38 -0.24 -16.75 16 17 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -26.97 13.06 55.49 0.72 -26.24 16 21 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.11 -1.68 2.46 -90.52 -0.22 -1.90 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 27 C -0.14 -2.09 9.03 37.15 0.34 -1.75 16 28 C 0.12 1.63 5.71 -3.73 -0.02 1.61 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.90 8.11 -51.93 -0.42 0.47 16 37 H 0.07 0.89 6.25 -51.93 -0.32 0.56 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.38 9.53 7.51 -40.82 -0.31 9.23 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.07 1.37 7.36 -51.93 -0.38 0.99 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -30.63 384.92 -7.47 -38.11 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.68 Total: 6.78 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.25 Total: -3.70 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.39 Total: -55.76 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.29 Total: -7.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.63 -7.47 -38.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036290500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.067 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds