Wall clock time and date at job start Tue Mar 31 2020 13:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47546 * 2 1 4 4 O 1.34252 * 126.52728 * 270.18838 * 3 2 1 5 5 C 1.34049 * 108.23085 * 180.26279 * 4 3 2 6 6 N 1.29938 * 109.24369 * 359.73442 * 5 4 3 7 7 C 1.36076 * 108.47311 * 359.97438 * 6 5 4 8 8 C 1.47418 * 126.44827 * 180.02562 * 7 6 5 9 9 O 1.21609 * 120.00000 * 174.11338 * 8 7 6 10 10 N 1.34783 * 120.00027 * 354.10914 * 8 7 6 11 11 C 1.46929 * 120.62707 * 353.96831 * 10 8 7 12 12 C 1.53191 * 108.77498 * 126.37045 * 11 10 8 13 13 C 1.53045 * 109.31188 * 54.62981 * 12 11 10 14 14 H 1.09005 * 109.45865 * 58.65751 * 13 12 11 15 15 N 1.46501 * 109.45808 * 178.61506 * 13 12 11 16 16 C 1.36941 * 119.99944 * 275.07054 * 15 13 12 17 17 H 1.08003 * 119.99931 * 359.97438 * 16 15 13 18 18 C 1.38808 * 119.99901 * 180.02562 * 16 15 13 19 19 N 1.31626 * 120.00151 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00042 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46869 * 60.00278 * 20 18 16 22 22 H 1.48497 * 109.47178 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47091 * 300.00171 * 20 18 16 24 24 C 1.53042 * 109.53869 * 298.63479 * 13 12 11 25 25 H 1.08993 * 109.52140 * 301.39696 * 24 13 12 26 26 C 1.53001 * 109.49661 * 181.31582 * 24 13 12 27 27 C 1.52991 * 109.47067 * 175.16326 * 26 24 13 28 28 C 1.46922 * 120.62896 * 173.94440 * 10 8 7 29 29 H 1.09000 * 109.47482 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46565 * 300.00074 * 1 2 3 31 31 H 1.08997 * 109.47040 * 59.99499 * 1 2 3 32 32 H 1.09009 * 109.46717 * 239.99695 * 2 1 3 33 33 H 1.09004 * 109.46708 * 120.00631 * 2 1 3 34 34 H 1.08000 * 125.38294 * 179.69625 * 5 4 3 35 35 H 1.09006 * 109.58129 * 246.15779 * 11 10 8 36 36 H 1.08998 * 109.58938 * 6.43887 * 11 10 8 37 37 H 1.08996 * 109.49698 * 174.58111 * 12 11 10 38 38 H 1.09003 * 109.49673 * 294.64737 * 12 11 10 39 39 H 0.96995 * 119.99704 * 95.07318 * 15 13 12 40 40 H 0.96991 * 120.00026 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.47015 * 55.16004 * 26 24 13 42 42 H 1.09000 * 109.47261 * 295.16430 * 26 24 13 43 43 H 1.09006 * 109.47371 * 60.00007 * 27 26 24 44 44 H 1.09000 * 109.47165 * 300.00163 * 27 26 24 45 45 H 1.09007 * 109.47281 * 180.02562 * 27 26 24 46 46 H 1.08998 * 109.58347 * 113.84527 * 28 10 8 47 47 H 1.08999 * 109.70566 * 353.48763 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2955 2.1752 -1.0788 5 6 2.7266 3.3727 -0.6580 6 7 2.7359 3.3923 0.6412 7 6 2.3019 2.1845 1.0937 8 6 2.1574 1.7778 2.5032 9 8 1.6567 0.7042 2.7780 10 7 2.5802 2.5958 3.4875 11 6 3.3051 3.8342 3.1718 12 6 2.5984 5.0076 3.8577 13 6 2.4723 4.7173 5.3550 14 1 3.4644 4.5644 5.7801 15 7 1.8265 5.8520 6.0195 16 6 2.5747 6.9256 6.4228 17 1 3.6410 6.9357 6.2515 18 6 1.9628 8.0005 7.0529 19 7 0.6635 7.9876 7.2631 20 14 2.9836 9.4648 7.6038 21 1 3.6527 10.0729 6.4258 22 1 2.0998 10.4708 8.2457 23 1 4.0096 9.0144 8.5782 24 6 1.6289 3.4573 5.5628 25 1 0.6448 3.6001 5.1166 26 6 1.4760 3.1864 7.0608 27 6 0.5346 1.9987 7.2708 28 6 2.3246 2.2662 4.8962 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 3.0205 4.1917 -1.2977 35 1 4.3297 3.7609 3.5366 36 1 3.3116 3.9890 2.0929 37 1 3.1795 5.9181 3.7113 38 1 1.6055 5.1365 3.4267 39 1 0.8689 5.8427 6.1737 40 1 0.2361 8.7385 7.7037 41 1 1.0624 4.0687 7.5492 42 1 2.4514 2.9572 7.4900 43 1 0.9483 1.1164 6.7824 44 1 -0.4407 2.2279 6.8416 45 1 0.4253 1.8060 8.3381 46 1 3.2692 2.0652 5.4016 47 1 1.6831 1.3872 4.9575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037807481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:12 Heat of formation + Delta-G solvation = -1.001795 kcal Electronic energy + Delta-G solvation = -28257.870004 eV Core-core repulsion = 24442.743542 eV Total energy + Delta-G solvation = -3815.126462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.68190 -39.92592 -37.75407 -35.37378 -34.55243 -34.17471 -33.65431 -31.63491 -29.67631 -29.37135 -28.55321 -25.66529 -24.28887 -23.74432 -23.66813 -22.44455 -21.70801 -20.72999 -19.93828 -19.23330 -17.53580 -17.07452 -16.94696 -16.57975 -15.87762 -15.20712 -15.01214 -14.82842 -14.61934 -14.06574 -13.95667 -13.65618 -13.57066 -13.26589 -13.18661 -13.01967 -12.81398 -12.55413 -12.19528 -12.06626 -11.84827 -11.57724 -11.55651 -11.30339 -11.22485 -10.92967 -10.84702 -10.65679 -10.35861 -10.22684 -10.19166 -10.08452 -9.78495 -9.53713 -9.48187 -9.15867 -8.79066 -8.34290 -6.89728 -5.73042 -3.01039 0.93971 1.86834 2.33850 3.09608 3.28975 3.45430 3.50105 3.50835 3.85144 4.35579 4.55634 4.61768 4.81178 4.95807 5.05048 5.17602 5.28771 5.31556 5.41467 5.51199 5.55849 5.57700 5.59844 5.66049 5.68514 5.74666 5.78202 5.85741 5.92453 5.98951 6.04791 6.17783 6.20875 6.35227 6.45066 6.47559 6.55953 6.57580 6.72152 6.83993 6.93825 7.04288 7.17680 7.25908 7.61827 7.72683 8.21564 8.45531 9.56629 10.15119 10.50325 11.49561 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.003479 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.861308 B = 8046.975239 C = 9231.783101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C 0.040 3.960 4 O -0.199 6.199 5 C 0.174 3.826 6 N -0.454 5.454 7 C -0.065 4.065 8 C 0.597 3.403 9 O -0.545 6.545 10 N -0.584 5.584 11 C 0.063 3.937 12 C -0.142 4.142 13 C 0.181 3.819 14 H 0.046 0.954 15 N -0.721 5.721 16 C -0.235 4.235 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.103 4.103 25 H 0.068 0.932 26 C -0.112 4.112 27 C -0.152 4.152 28 C 0.119 3.881 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.255 0.745 35 H 0.055 0.945 36 H 0.144 0.856 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -15.613 -15.884 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.016 4.016 4 O -0.085 6.085 5 C -0.053 4.053 6 N -0.183 5.183 7 C -0.184 4.184 8 C 0.384 3.616 9 O -0.424 6.424 10 N -0.314 5.314 11 C -0.060 4.060 12 C -0.183 4.183 13 C 0.071 3.929 14 H 0.064 0.936 15 N -0.361 5.361 16 C -0.366 4.366 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.123 4.123 25 H 0.087 0.913 26 C -0.150 4.150 27 C -0.210 4.210 28 C -0.003 4.003 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.271 0.729 35 H 0.073 0.927 36 H 0.160 0.840 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.065 -15.513 -15.303 22.005 hybrid contribution 0.180 0.891 -0.074 0.912 sum 3.245 -14.622 -15.377 21.466 Atomic orbital electron populations 1.21707 0.92999 1.02852 1.02635 1.20338 0.97203 0.85348 1.05117 1.23767 0.98995 0.95569 0.83262 1.84366 1.63635 1.24252 1.36284 1.28254 0.98395 0.87059 0.91636 1.70431 1.17817 1.20737 1.09271 1.21547 1.09958 0.91200 0.95690 1.16771 0.78384 0.83819 0.82579 1.90745 1.46549 1.22132 1.83014 1.47952 1.54638 1.22907 1.05944 1.23024 0.94027 0.82668 1.06290 1.22542 1.00484 0.96783 0.98500 1.20244 0.95097 0.86849 0.90701 0.93629 1.42402 1.07805 1.16748 1.69153 1.19182 0.91532 0.95258 1.30677 0.91340 1.24709 0.95718 0.98639 1.01858 1.69650 1.08198 1.32055 1.48298 0.86306 0.79005 0.82730 0.78376 1.21367 1.21808 1.21365 1.21768 0.99791 0.94962 0.95801 0.91314 1.21451 0.99462 0.98971 0.95095 1.21845 0.99850 0.98411 1.00859 1.21798 1.00508 0.98713 0.79311 0.91121 0.91480 0.92694 0.89899 0.86702 0.72924 0.92691 0.83973 0.90940 0.92561 0.78286 0.93554 0.89782 0.92467 0.93214 0.93029 0.93186 0.91609 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.90 37.16 0.37 -0.90 16 2 C -0.04 -0.39 5.87 -27.89 -0.16 -0.56 16 3 C 0.04 0.46 6.69 -35.08 -0.23 0.23 16 4 O -0.20 -1.96 10.73 6.53 0.07 -1.89 16 5 C 0.17 1.53 13.19 51.96 0.69 2.21 16 6 N -0.45 -5.70 7.73 -11.48 -0.09 -5.79 16 7 C -0.06 -0.89 6.73 -83.02 -0.56 -1.45 16 8 C 0.60 9.41 7.68 -12.52 -0.10 9.31 16 9 O -0.55 -9.10 14.33 5.27 0.08 -9.02 16 10 N -0.58 -9.24 2.97 -174.04 -0.52 -9.76 16 11 C 0.06 0.98 6.33 -3.71 -0.02 0.95 16 12 C -0.14 -2.62 5.66 -26.61 -0.15 -2.77 16 13 C 0.18 3.61 2.19 -67.89 -0.15 3.46 16 14 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 15 N -0.72 -17.76 4.33 -53.38 -0.23 -17.99 16 16 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 20 Si 0.90 22.35 29.55 -169.99 -5.02 17.32 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C -0.10 -1.78 1.93 -90.50 -0.17 -1.96 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 26 C -0.11 -1.87 5.31 -26.74 -0.14 -2.01 16 27 C -0.15 -2.16 9.67 37.15 0.36 -1.81 16 28 C 0.12 1.85 5.30 -3.71 -0.02 1.83 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.11 1.19 6.63 -51.93 -0.34 0.85 16 34 H 0.26 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.14 2.13 3.66 -77.35 -0.28 1.84 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.38 10.17 7.51 -40.82 -0.31 9.86 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.08 1.67 7.22 -51.93 -0.37 1.30 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.65 6.69 -51.93 -0.35 0.30 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 1.39 5.76 -51.93 -0.30 1.09 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -32.22 373.35 -7.33 -39.55 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.42 Total: 9.80 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.54 Total: -0.52 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.11 Total: -60.87 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.15 Total: -10.91 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.22 -7.33 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037807481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.548 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds