Wall clock time and date at job start Tue Mar 31 2020 12:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50711 * 109.46819 * 2 1 4 4 O 1.33486 * 126.82964 * 270.00091 * 3 2 1 5 5 N 1.20656 * 113.15625 * 179.70265 * 4 3 2 6 6 C 1.30011 * 112.30109 * 0.50692 * 5 4 3 7 7 C 1.37351 * 126.82464 * 90.00295 * 3 2 1 8 8 C 1.47395 * 128.57222 * 359.97438 * 7 3 2 9 9 O 1.21613 * 120.00113 * 313.82039 * 8 7 3 10 10 N 1.34773 * 120.00248 * 133.81201 * 8 7 3 11 11 C 1.46931 * 120.63025 * 3.96465 * 10 8 7 12 12 C 1.52762 * 109.00533 * 233.58071 * 11 10 8 13 13 C 1.53035 * 109.38679 * 305.58428 * 12 11 10 14 14 H 1.09003 * 109.46329 * 301.22502 * 13 12 11 15 15 N 1.46496 * 109.46131 * 181.26352 * 13 12 11 16 16 C 1.36937 * 120.00089 * 84.93774 * 15 13 12 17 17 H 1.07998 * 119.99995 * 359.97438 * 16 15 13 18 18 C 1.38806 * 119.99944 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00355 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99944 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47477 * 59.99343 * 20 18 16 22 22 H 1.48508 * 109.47086 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46856 * 299.99307 * 20 18 16 24 24 C 1.53041 * 109.53619 * 61.24189 * 13 12 11 25 25 H 1.09006 * 109.52435 * 58.60100 * 24 13 12 26 26 C 1.53004 * 109.50164 * 178.68116 * 24 13 12 27 27 C 1.52999 * 109.47395 * 184.83749 * 26 24 13 28 28 C 1.46931 * 120.63282 * 184.24104 * 10 8 7 29 29 H 1.09002 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46986 * 299.99473 * 1 2 3 31 31 H 1.09003 * 109.47549 * 60.00091 * 1 2 3 32 32 H 1.09004 * 109.46986 * 240.00527 * 2 1 3 33 33 H 1.09003 * 109.47549 * 119.99909 * 2 1 3 34 34 H 1.08001 * 127.33734 * 179.79967 * 6 5 4 35 35 H 1.08993 * 109.58580 * 353.41843 * 11 10 8 36 36 H 1.09002 * 109.58813 * 113.84144 * 11 10 8 37 37 H 1.09004 * 109.55746 * 185.54963 * 12 11 10 38 38 H 1.08993 * 109.35850 * 65.50317 * 12 11 10 39 39 H 0.97004 * 119.99900 * 264.93421 * 15 13 12 40 40 H 0.96993 * 120.00519 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.46960 * 304.84368 * 26 24 13 42 42 H 1.09005 * 109.46682 * 64.83597 * 26 24 13 43 43 H 1.08995 * 109.46715 * 179.97438 * 27 26 24 44 44 H 1.08994 * 109.46895 * 300.00383 * 27 26 24 45 45 H 1.09003 * 109.46596 * 60.00208 * 27 26 24 46 46 H 1.08997 * 109.58926 * 246.15968 * 28 10 8 47 47 H 1.08997 * 109.58287 * 6.43918 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2990 2.1754 -1.0684 5 7 2.6843 3.2826 -0.7832 6 6 2.7548 3.4646 0.5021 7 6 2.3067 2.1971 1.0995 8 6 2.1825 1.8469 2.5258 9 8 1.1794 1.2906 2.9302 10 7 3.1804 2.1429 3.3818 11 6 4.3601 2.8910 2.9264 12 6 5.6186 2.1058 3.2915 13 6 5.6089 1.7989 4.7907 14 1 5.5646 2.7322 5.3522 15 7 6.8296 1.0721 5.1481 16 6 7.9793 1.7611 5.4287 17 1 7.9862 2.8402 5.3862 18 6 9.1361 1.0724 5.7668 19 7 9.1279 -0.2428 5.8181 20 14 10.7046 2.0122 6.1490 21 1 10.4723 2.9133 7.3062 22 1 11.7887 1.0524 6.4793 23 1 11.0997 2.8178 4.9656 24 6 4.3873 0.9416 5.1296 25 1 4.4179 0.0187 4.5503 26 6 4.3960 0.6077 6.6228 27 6 3.2432 -0.3474 6.9386 28 6 3.1122 1.7183 4.7868 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.0704 4.3577 1.0209 35 1 4.3141 3.0231 1.8455 36 1 4.3860 3.8652 3.4148 37 1 6.5013 2.6968 3.0468 38 1 5.6379 1.1724 2.7291 39 1 6.8235 0.1029 5.1859 40 1 9.9361 -0.7240 6.0547 41 1 5.3424 0.1339 6.8836 42 1 4.2772 1.5243 7.2007 43 1 3.2498 -0.5855 8.0022 44 1 2.2970 0.1265 6.6777 45 1 3.3622 -1.2639 6.3607 46 1 3.0343 2.5948 5.4300 47 1 2.2417 1.0790 4.9334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037924357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:42 Heat of formation + Delta-G solvation = 9.549414 kcal Electronic energy + Delta-G solvation = -28254.300360 eV Core-core repulsion = 24439.631433 eV Total energy + Delta-G solvation = -3814.668927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.97645 -41.31227 -39.16291 -36.27894 -35.75149 -35.40979 -34.54352 -33.46361 -31.43442 -31.10836 -30.03019 -27.22505 -25.72684 -25.23773 -24.88154 -24.11916 -22.65128 -22.20687 -21.13177 -20.16902 -19.11980 -18.89360 -18.56092 -17.70747 -17.28472 -16.74836 -16.30104 -15.85169 -15.54384 -15.51956 -15.39780 -14.92543 -14.74309 -14.58137 -14.46965 -14.43039 -13.91328 -13.61004 -13.55719 -13.16788 -13.09122 -12.80397 -12.76883 -12.68310 -12.51845 -12.46932 -12.21859 -12.10593 -11.94060 -11.83515 -11.57717 -11.50812 -11.42129 -11.16005 -11.09641 -10.79314 -10.48855 -9.72223 -8.95024 -7.90053 -5.17373 0.11615 0.76609 1.49273 1.50777 1.56595 1.57650 1.72037 2.11266 2.58690 3.15207 3.28972 3.42996 3.51755 3.74073 3.80391 3.85950 3.99621 4.06051 4.14346 4.22185 4.25336 4.32367 4.33049 4.43899 4.47946 4.65536 4.70052 4.73580 4.79445 4.80613 4.81320 4.89344 4.96583 5.01946 5.05376 5.06083 5.16855 5.30523 5.32967 5.37061 5.46768 5.52203 5.58573 5.65609 6.27080 6.31519 6.97410 7.11049 7.38177 8.14464 8.37298 9.33197 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.003527 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.354679 B = 7936.864379 C = 8963.959993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.045 3.955 4 O 0.088 5.912 5 N -0.373 5.373 6 C 0.032 3.968 7 C -0.274 4.274 8 C 0.600 3.400 9 O -0.560 6.560 10 N -0.594 5.594 11 C 0.109 3.891 12 C -0.142 4.142 13 C 0.179 3.821 14 H 0.050 0.950 15 N -0.730 5.730 16 C -0.231 4.231 17 H 0.077 0.923 18 C -0.074 4.074 19 N -0.970 5.970 20 Si 0.965 3.035 21 H -0.279 1.279 22 H -0.301 1.301 23 H -0.279 1.279 24 C -0.092 4.092 25 H 0.053 0.947 26 C -0.107 4.107 27 C -0.146 4.146 28 C 0.128 3.872 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.228 0.772 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.371 0.629 40 H 0.248 0.752 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.700 4.401 -9.366 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.019 4.019 4 O 0.030 5.970 5 N -0.079 5.079 6 C -0.150 4.150 7 C -0.281 4.281 8 C 0.388 3.612 9 O -0.440 6.440 10 N -0.325 5.325 11 C -0.013 4.013 12 C -0.183 4.183 13 C 0.070 3.930 14 H 0.068 0.932 15 N -0.369 5.369 16 C -0.363 4.363 17 H 0.095 0.905 18 C -0.266 4.266 19 N -0.621 5.621 20 Si 0.795 3.205 21 H -0.205 1.205 22 H -0.228 1.228 23 H -0.206 1.206 24 C -0.112 4.112 25 H 0.071 0.929 26 C -0.145 4.145 27 C -0.203 4.203 28 C 0.005 3.995 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.244 0.756 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.842 5.012 -10.190 21.149 hybrid contribution 1.481 -0.338 1.115 1.885 sum -16.360 4.675 -9.075 19.284 Atomic orbital electron populations 1.21727 0.91970 1.03985 1.02371 1.20412 0.97883 0.84360 1.05821 1.25190 0.95011 0.96941 0.84710 1.84543 1.61718 1.17399 1.33320 1.73644 1.17364 0.98861 1.18056 1.26798 0.99632 0.99661 0.88925 1.22012 1.14299 0.96961 0.94851 1.16999 0.82550 0.77938 0.83703 1.90771 1.30376 1.44439 1.78373 1.48021 1.19358 1.54820 1.10319 1.21983 0.82957 0.95193 1.01210 1.22398 0.97149 0.99744 0.99003 1.20420 0.85386 0.94421 0.92727 0.93172 1.42569 1.06727 1.05418 1.82197 1.19553 0.88781 0.91438 1.36555 0.90472 1.25446 1.01010 0.96210 1.03962 1.69803 1.28298 1.06772 1.57221 0.85331 0.79744 0.77231 0.78174 1.20501 1.22775 1.20567 1.21630 0.94304 0.98264 0.97028 0.92854 1.21356 0.98878 0.99943 0.94349 1.21780 0.98089 0.98950 1.01481 1.21725 0.97946 0.99672 0.80126 0.89311 0.93304 0.91474 0.86456 0.89017 0.75577 0.88670 0.88706 0.91539 0.94002 0.79765 0.94305 0.93531 0.91608 0.92216 0.91530 0.93537 0.89576 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 71.98 0.71 -1.42 16 2 C -0.05 -0.76 6.38 29.85 0.19 -0.57 16 3 C 0.05 0.96 6.80 25.48 0.17 1.13 16 4 O 0.09 1.94 11.06 77.05 0.85 2.80 16 5 N -0.37 -8.53 12.01 -54.20 -0.65 -9.18 16 6 C 0.03 0.64 10.11 87.29 0.88 1.52 16 7 C -0.27 -6.33 5.47 -18.75 -0.10 -6.43 16 8 C 0.60 15.89 7.49 86.65 0.65 16.54 16 9 O -0.56 -17.42 16.34 -4.07 -0.07 -17.49 16 10 N -0.59 -14.82 2.98 -823.64 -2.45 -17.28 16 11 C 0.11 2.50 5.98 86.22 0.52 3.01 16 12 C -0.14 -4.46 5.64 30.53 0.17 -4.29 16 13 C 0.18 6.37 2.20 45.02 0.10 6.46 16 14 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 15 N -0.73 -34.43 4.33 -322.83 -1.40 -35.83 16 16 C -0.23 -12.13 9.93 84.03 0.83 -11.29 16 17 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 18 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 19 N -0.97 -58.12 13.06 21.65 0.28 -57.83 16 20 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 C -0.09 -2.82 1.93 -10.71 -0.02 -2.84 16 25 H 0.05 1.81 8.14 -2.38 -0.02 1.80 16 26 C -0.11 -3.28 5.31 30.60 0.16 -3.11 16 27 C -0.15 -3.68 9.67 71.98 0.70 -2.98 16 28 C 0.13 3.24 5.31 86.36 0.46 3.70 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.97 7.94 -2.39 -0.02 0.95 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.69 8.11 -2.39 -0.02 1.67 16 34 H 0.23 3.03 7.64 -2.91 -0.02 3.01 16 35 H 0.10 1.93 4.38 -2.39 -0.01 1.92 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.37 19.34 7.51 -92.71 -0.70 18.64 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.05 1.79 7.22 -2.39 -0.02 1.77 16 42 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.47 6.70 -2.39 -0.02 1.45 16 45 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.09 2.43 5.75 -2.39 -0.01 2.41 16 Total: -1.00 -66.16 377.28 4.76 -61.40 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.28 Total: 30.61 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 5.89 Total: -4.21 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -4.22 Total: -120.11 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.79 Total: -14.69 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.16 4.76 -61.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037924357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.948 kcal (2) G-P(sol) polarization free energy of solvation -66.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds