Wall clock time and date at job start Tue Mar 31 2020 13:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47295 * 2 1 4 4 N 1.29929 * 125.37355 * 90.29997 * 3 2 1 5 5 C 1.36068 * 108.47893 * 180.16846 * 4 3 2 6 6 C 1.47413 * 126.45473 * 179.82366 * 5 4 3 7 7 O 1.21617 * 120.00249 * 186.08562 * 6 5 4 8 8 N 1.34773 * 119.99855 * 6.08875 * 6 5 4 9 9 C 1.46929 * 120.63326 * 6.50571 * 8 6 5 10 10 C 1.53191 * 108.77473 * 233.58619 * 9 8 6 11 11 C 1.53045 * 109.31301 * 305.36157 * 10 9 8 12 12 H 1.08996 * 109.44405 * 301.35026 * 11 10 9 13 13 N 1.46497 * 109.45845 * 181.38440 * 11 10 9 14 14 C 1.36936 * 119.99727 * 84.93345 * 13 11 10 15 15 H 1.08000 * 120.00114 * 359.72066 * 14 13 11 16 16 C 1.38822 * 119.99884 * 179.72163 * 14 13 11 17 17 N 1.31614 * 119.99795 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99855 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47444 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47076 * 120.00391 * 18 16 14 21 21 H 1.48497 * 109.46974 * 239.99790 * 18 16 14 22 22 C 1.53038 * 109.53637 * 61.36565 * 11 10 9 23 23 C 1.46928 * 120.63332 * 186.47469 * 8 6 5 24 24 H 1.08997 * 109.59263 * 246.20484 * 23 8 6 25 25 C 1.53005 * 109.58482 * 6.62993 * 23 8 6 26 26 C 1.36094 * 107.09705 * 359.55787 * 5 4 3 27 27 C 1.50701 * 126.52836 * 180.24103 * 26 5 4 28 28 O 1.34050 * 125.38165 * 269.97914 * 3 2 1 29 29 H 1.09006 * 109.47454 * 299.99323 * 1 2 3 30 30 H 1.09001 * 109.47441 * 60.00095 * 1 2 3 31 31 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.47065 * 240.00422 * 2 1 3 33 33 H 1.09002 * 109.47597 * 120.00674 * 2 1 3 34 34 H 1.09002 * 109.58140 * 353.36651 * 9 8 6 35 35 H 1.09000 * 109.59299 * 113.65331 * 9 8 6 36 36 H 1.08997 * 109.49801 * 185.40585 * 10 9 8 37 37 H 1.09006 * 109.49627 * 65.30917 * 10 9 8 38 38 H 0.97000 * 120.00161 * 264.65446 * 13 11 10 39 39 H 0.97000 * 120.00306 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.49931 * 58.58635 * 22 11 10 41 41 H 1.09004 * 109.49712 * 178.65346 * 22 11 10 42 42 H 1.09002 * 109.47111 * 173.46356 * 25 23 8 43 43 H 1.08995 * 109.47027 * 293.47071 * 25 23 8 44 44 H 1.09004 * 109.47060 * 53.46505 * 25 23 8 45 45 H 1.08997 * 109.47006 * 89.99994 * 27 26 5 46 46 H 1.08994 * 109.47508 * 210.00479 * 27 26 5 47 47 H 1.09006 * 109.46864 * 330.00620 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2883 2.1281 1.0594 5 6 2.7168 3.3575 0.6640 6 6 3.1107 4.4727 1.5440 7 8 3.3711 5.5608 1.0673 8 7 3.1823 4.2864 2.8769 9 6 3.0104 2.9470 3.4559 10 6 1.9165 3.0093 4.5265 11 6 2.2679 4.0946 5.5467 12 1 3.2346 3.8698 5.9971 13 7 1.2405 4.1345 6.5902 14 6 1.3191 3.2848 7.6612 15 1 2.1360 2.5821 7.7342 16 6 0.3487 3.3266 8.6530 17 7 -0.6465 4.1832 8.5642 18 14 0.4555 2.1670 10.1135 19 1 1.6597 1.3088 9.9772 20 1 0.5495 2.9573 11.3672 21 1 -0.7583 1.3125 10.1569 22 6 2.3356 5.4533 4.8456 23 6 3.4344 5.4187 3.7786 24 1 4.4055 5.2950 4.2579 25 6 3.4156 6.7240 2.9805 26 6 2.7189 3.3619 -0.6969 27 6 3.1236 4.5067 -1.5896 28 8 2.2914 2.1525 -1.0929 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.7173 2.2460 2.6743 35 1 3.9476 2.6206 3.9067 36 1 1.8454 2.0455 5.0305 37 1 0.9615 3.2464 4.0574 38 1 0.5068 4.7656 6.5246 39 1 -1.3244 4.2127 9.2574 40 1 1.3767 5.6673 4.3736 41 1 2.5624 6.2292 5.5769 42 1 3.4866 7.5693 3.6649 43 1 4.2608 6.7413 2.2926 44 1 2.4859 6.7910 2.4155 45 1 4.1901 4.4405 -1.8044 46 1 2.5614 4.4567 -2.5220 47 1 2.9119 5.4510 -1.0879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044769713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:31 Heat of formation + Delta-G solvation = 12.862364 kcal Electronic energy + Delta-G solvation = -28210.132204 eV Core-core repulsion = 24395.606937 eV Total energy + Delta-G solvation = -3814.525267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.65128 -40.16700 -37.34070 -35.41319 -34.44544 -34.40947 -32.24354 -31.97650 -31.71633 -29.23175 -27.47264 -26.79847 -24.83555 -24.09348 -23.28802 -22.78044 -22.03230 -20.73585 -20.00427 -19.12292 -17.35652 -17.13091 -16.89725 -16.07549 -15.91346 -15.09219 -14.84926 -14.73381 -14.70782 -13.99656 -13.76474 -13.68266 -13.55764 -13.45497 -13.16313 -13.06300 -12.89863 -12.73048 -12.52633 -12.11974 -12.06520 -11.86449 -11.57328 -11.52501 -11.44613 -11.34769 -10.88687 -10.85698 -10.68825 -10.53582 -10.16187 -9.88171 -9.73910 -9.61470 -9.08819 -8.93819 -8.80868 -8.28579 -6.91344 -5.73574 -3.01960 0.96561 1.85647 2.26887 3.06934 3.31702 3.44533 3.50101 3.52409 3.67158 4.40754 4.52666 4.61127 4.71308 4.79714 4.94048 5.05001 5.16728 5.23409 5.25663 5.30131 5.43872 5.45443 5.53400 5.57587 5.62743 5.67661 5.70701 5.73281 5.82968 5.87330 5.89465 5.96715 6.08582 6.20349 6.30912 6.46446 6.53475 6.57335 6.63214 6.69948 6.86488 7.05388 7.18401 7.34542 7.66010 7.73132 8.27608 8.44926 9.55988 10.14675 10.49711 11.49303 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.003629 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.400283 B = 7713.670179 C = 9344.526401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.194 3.806 4 N -0.447 5.447 5 C -0.067 4.067 6 C 0.599 3.401 7 O -0.539 6.539 8 N -0.581 5.581 9 C 0.063 3.937 10 C -0.140 4.140 11 C 0.176 3.824 12 H 0.045 0.955 13 N -0.725 5.725 14 C -0.235 4.235 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.133 4.133 23 C 0.145 3.855 24 H 0.072 0.928 25 C -0.137 4.137 26 C 0.033 3.967 27 C -0.075 4.075 28 O -0.197 6.197 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.144 0.856 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.439 -4.582 -22.473 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.014 4.014 4 N -0.177 5.177 5 C -0.187 4.187 6 C 0.387 3.613 7 O -0.419 6.419 8 N -0.311 5.311 9 C -0.059 4.059 10 C -0.181 4.181 11 C 0.066 3.934 12 H 0.063 0.937 13 N -0.365 5.365 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.172 4.172 23 C 0.042 3.958 24 H 0.090 0.910 25 C -0.194 4.194 26 C -0.023 4.023 27 C -0.132 4.132 28 O -0.085 6.085 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.553 -4.353 -21.939 23.608 hybrid contribution -0.305 -0.394 0.435 0.661 sum 7.248 -4.747 -21.504 23.184 Atomic orbital electron populations 1.21803 0.92799 1.03200 1.03240 1.20146 0.97121 0.83838 1.05392 1.26485 0.99472 0.96930 0.78476 1.70427 1.16210 1.02916 1.28143 1.21685 1.10314 0.94366 0.92287 1.16804 0.77530 0.85306 0.81705 1.90790 1.51566 1.24193 1.75349 1.48017 1.68369 1.10142 1.04609 1.23000 0.99136 0.83687 1.00099 1.22522 0.97526 1.01822 0.96272 1.20224 0.93198 0.91396 0.88563 0.93663 1.42436 1.27624 1.44318 1.22113 1.19294 1.07013 1.12254 0.98101 0.91156 1.24735 0.97607 0.99639 0.99082 1.69674 1.14463 1.38782 1.35277 0.86140 0.77149 0.80188 0.82879 1.20570 1.21941 1.21944 1.22279 0.98250 0.99677 0.97013 1.21359 0.98504 0.85818 0.90071 0.91036 1.22190 1.04179 0.94277 0.98725 1.23673 0.98553 0.85617 0.94461 1.20594 1.02231 0.92673 0.97666 1.84307 1.63881 1.22364 1.37927 0.91292 0.92245 0.90714 0.88863 0.87200 0.83987 0.92694 0.91018 0.92559 0.78349 0.93629 0.91905 0.90650 0.93625 0.90659 0.91868 0.89285 0.90342 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.15 0.37 -0.69 16 2 C -0.03 -0.19 6.56 -27.89 -0.18 -0.37 16 3 C 0.19 2.16 7.56 -13.08 -0.10 2.06 16 4 N -0.45 -6.13 7.74 -7.66 -0.06 -6.19 16 5 C -0.07 -0.96 6.72 -83.02 -0.56 -1.52 16 6 C 0.60 9.44 7.48 -12.53 -0.09 9.35 16 7 O -0.54 -8.64 10.37 5.26 0.05 -8.59 16 8 N -0.58 -9.27 2.97 -166.47 -0.49 -9.77 16 9 C 0.06 1.01 6.33 -3.71 -0.02 0.99 16 10 C -0.14 -2.63 5.66 -26.61 -0.15 -2.78 16 11 C 0.18 3.61 2.73 -67.89 -0.19 3.42 16 12 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 13 N -0.72 -18.48 5.12 -53.38 -0.27 -18.75 16 14 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 18 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 C -0.13 -2.37 4.84 -26.61 -0.13 -2.50 16 23 C 0.15 2.28 3.49 -67.59 -0.24 2.04 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 C -0.14 -2.01 7.61 37.16 0.28 -1.72 16 26 C 0.03 0.40 7.44 -35.08 -0.26 0.14 16 27 C -0.08 -0.67 9.95 36.01 0.36 -0.31 16 28 O -0.20 -2.24 10.73 6.52 0.07 -2.17 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.14 2.20 3.67 -76.57 -0.28 1.92 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.38 10.46 7.80 -40.82 -0.32 10.14 16 39 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.12 6.57 -51.93 -0.34 0.78 16 44 H 0.06 1.01 6.93 -51.93 -0.36 0.65 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.11 1.17 6.37 -51.93 -0.33 0.84 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -32.45 372.08 -8.07 -40.51 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.52 Total: 8.78 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.16 Total: 0.84 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.10 Total: -62.48 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.12 Total: -10.76 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.45 -8.07 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044769713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.377 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds