Wall clock time and date at job start Tue Mar 31 2020 13:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47208 * 2 1 4 4 N 1.29942 * 125.37699 * 89.99898 * 3 2 1 5 5 C 1.36068 * 108.47355 * 179.97438 * 4 3 2 6 6 C 1.47422 * 126.44422 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99960 * 173.87018 * 6 5 4 8 8 N 1.34775 * 119.99909 * 353.86588 * 6 5 4 9 9 C 1.46924 * 120.63536 * 352.90451 * 8 6 5 10 10 C 1.53198 * 108.77475 * 233.58685 * 9 8 6 11 11 C 1.53044 * 109.30939 * 305.36068 * 10 9 8 12 12 H 1.08997 * 109.45924 * 301.36167 * 11 10 9 13 13 N 1.46503 * 109.45650 * 181.38847 * 11 10 9 14 14 C 1.36935 * 119.99976 * 85.00054 * 13 11 10 15 15 H 1.08001 * 120.00065 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99841 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00203 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00040 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47175 * 59.99768 * 18 16 14 20 20 H 1.48498 * 109.47222 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47172 * 299.99963 * 18 16 14 22 22 C 1.53035 * 109.53968 * 61.36619 * 11 10 9 23 23 C 1.46929 * 120.62806 * 172.87724 * 8 6 5 24 24 H 1.08999 * 109.58920 * 6.48574 * 23 8 6 25 25 C 1.52995 * 109.58901 * 246.20239 * 23 8 6 26 26 C 1.36089 * 107.10692 * 0.22656 * 5 4 3 27 27 C 1.50695 * 126.52841 * 179.76979 * 26 5 4 28 28 O 1.34048 * 125.37844 * 269.95675 * 3 2 1 29 29 H 1.09001 * 109.47177 * 300.00034 * 1 2 3 30 30 H 1.08999 * 109.46820 * 59.99925 * 1 2 3 31 31 H 1.09005 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47177 * 239.99966 * 2 1 3 33 33 H 1.08999 * 109.46820 * 120.00075 * 2 1 3 34 34 H 1.08996 * 109.58347 * 353.36739 * 9 8 6 35 35 H 1.08995 * 109.59042 * 113.64921 * 9 8 6 36 36 H 1.09002 * 109.49745 * 65.31001 * 10 9 8 37 37 H 1.09002 * 109.49578 * 185.41416 * 10 9 8 38 38 H 0.96998 * 119.99369 * 264.99620 * 13 11 10 39 39 H 0.97002 * 120.00657 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.50147 * 178.67810 * 22 11 10 41 41 H 1.09003 * 109.49731 * 58.58143 * 22 11 10 42 42 H 1.09005 * 109.47262 * 60.00041 * 25 23 8 43 43 H 1.08997 * 109.47367 * 300.00122 * 25 23 8 44 44 H 1.08997 * 109.47395 * 179.97438 * 25 23 8 45 45 H 1.09000 * 109.46725 * 89.99726 * 27 26 5 46 46 H 1.09000 * 109.47315 * 210.00182 * 27 26 5 47 47 H 1.09003 * 109.47091 * 330.00432 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2831 2.1300 1.0595 5 6 2.7176 3.3573 0.6639 6 6 3.1116 4.4725 1.5439 7 8 3.5891 5.4840 1.0669 8 7 2.9423 4.3709 2.8771 9 6 2.2273 3.2254 3.4560 10 6 1.1038 3.7492 4.3562 11 6 1.6914 4.7114 5.3911 12 1 2.4470 4.1928 5.9811 13 7 0.6248 5.1886 6.2747 14 6 0.2567 4.4476 7.3658 15 1 0.7530 3.5116 7.5752 16 6 -0.7536 4.9002 8.2033 17 7 -1.3581 6.0412 7.9484 18 14 -1.2562 3.8890 9.6913 19 1 -0.0890 3.7232 10.5943 20 1 -2.3490 4.5853 10.4168 21 1 -1.7307 2.5544 9.2456 22 6 2.3326 5.9029 4.6761 23 6 3.4700 5.4035 3.7794 24 1 3.8671 6.2325 3.1936 25 6 4.5821 4.8084 4.6454 26 6 2.7147 3.3634 -0.6970 27 6 3.1137 4.5101 -1.5897 28 8 2.2918 2.1522 -1.0930 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8021 2.6184 2.6568 35 1 2.9188 2.6224 4.0444 36 1 0.3660 4.2739 3.7492 37 1 0.6269 2.9125 4.8668 38 1 0.1794 6.0296 6.0867 39 1 -2.0638 6.3577 8.5338 40 1 2.7303 6.5992 5.4143 41 1 1.5833 6.4073 4.0660 42 1 5.3847 4.4424 4.0051 43 1 4.1819 3.9830 5.2341 44 1 4.9724 5.5760 5.3136 45 1 4.1796 4.4464 -1.8084 46 1 2.5481 4.4601 -2.5201 47 1 2.9019 5.4534 -1.0860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044769714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:33 Heat of formation + Delta-G solvation = -23.370343 kcal Electronic energy + Delta-G solvation = -28123.883521 eV Core-core repulsion = 24307.787086 eV Total energy + Delta-G solvation = -3816.096435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.57340 -41.31733 -38.97692 -36.43756 -36.08385 -35.12865 -33.81389 -33.24872 -32.59547 -31.06851 -28.71746 -28.15172 -26.14311 -25.53795 -24.43286 -24.16289 -23.02550 -22.40557 -21.19313 -19.89408 -19.09162 -18.51025 -18.12368 -17.38581 -16.75911 -16.68642 -16.24861 -15.74425 -15.68194 -15.38918 -15.29936 -14.96931 -14.87112 -14.56007 -14.40087 -14.14759 -13.98359 -13.92776 -13.60197 -13.39024 -13.15850 -12.98820 -12.87579 -12.77414 -12.59284 -12.46587 -12.37357 -12.21632 -12.14599 -12.04414 -12.02652 -11.77507 -11.44504 -11.14284 -11.04652 -10.63712 -9.98104 -9.59790 -8.99777 -7.92422 -5.21549 -0.01302 0.88111 1.40471 1.47927 1.50996 1.56941 1.86881 2.13528 2.57327 2.77771 3.40004 3.43664 3.56011 3.76017 3.83654 4.06877 4.07736 4.12773 4.23002 4.24792 4.25140 4.34980 4.36443 4.47326 4.51527 4.55831 4.57360 4.67314 4.81793 4.85173 4.86356 4.97627 4.98850 5.01081 5.01814 5.04673 5.10510 5.22797 5.27392 5.32646 5.38927 5.51197 5.53059 5.70273 6.25976 6.29125 6.47714 6.99332 7.34600 8.09649 8.34018 9.31120 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.003483 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.688140 B = 8036.988181 C = 9345.418444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C 0.201 3.799 4 N -0.475 5.475 5 C -0.101 4.101 6 C 0.596 3.404 7 O -0.564 6.564 8 N -0.585 5.585 9 C 0.093 3.907 10 C -0.135 4.135 11 C 0.176 3.824 12 H 0.054 0.946 13 N -0.738 5.738 14 C -0.238 4.238 15 H 0.078 0.922 16 C -0.076 4.076 17 N -0.972 5.972 18 Si 0.972 3.028 19 H -0.277 1.277 20 H -0.298 1.298 21 H -0.277 1.277 22 C -0.122 4.122 23 C 0.144 3.856 24 H 0.095 0.905 25 C -0.152 4.152 26 C 0.044 3.956 27 C -0.071 4.071 28 O -0.194 6.194 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.061 0.939 38 H 0.370 0.630 39 H 0.250 0.750 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.404 -12.030 -21.191 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 C -0.007 4.007 4 N -0.204 5.204 5 C -0.219 4.219 6 C 0.385 3.615 7 O -0.444 6.444 8 N -0.316 5.316 9 C -0.030 4.030 10 C -0.176 4.176 11 C 0.067 3.933 12 H 0.071 0.929 13 N -0.377 5.377 14 C -0.369 4.369 15 H 0.095 0.905 16 C -0.268 4.268 17 N -0.623 5.623 18 Si 0.801 3.199 19 H -0.203 1.203 20 H -0.224 1.224 21 H -0.203 1.203 22 C -0.161 4.161 23 C 0.041 3.959 24 H 0.114 0.886 25 C -0.210 4.210 26 C -0.013 4.013 27 C -0.127 4.127 28 O -0.081 6.081 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.201 0.799 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.588 -11.852 -20.663 26.068 hybrid contribution -0.854 0.485 0.543 1.122 sum 9.734 -11.367 -20.119 25.075 Atomic orbital electron populations 1.21801 0.92590 1.04355 1.02075 1.20433 0.97040 0.81523 1.07297 1.27316 0.97888 0.97789 0.77731 1.70517 1.17245 1.02917 1.29763 1.21405 1.12987 0.94649 0.92907 1.17027 0.77938 0.84820 0.81749 1.90718 1.47895 1.30743 1.75093 1.48057 1.54248 1.24419 1.04828 1.22577 0.93469 0.87421 0.99500 1.22433 0.97672 1.00009 0.97533 1.20423 0.89662 0.93288 0.89890 0.92855 1.42648 1.41767 1.24838 1.28401 1.19596 1.13708 1.02218 1.01415 0.90457 1.25550 0.99892 0.98742 1.02637 1.69825 1.28525 1.22988 1.40977 0.85230 0.77341 0.77869 0.79458 1.20271 1.22432 1.20342 1.22062 0.97382 0.98304 0.98324 1.21209 0.93633 0.90673 0.90351 0.88646 1.22080 0.97106 1.02172 0.99661 1.24134 0.96677 0.86264 0.94188 1.20650 1.03768 0.90389 0.97925 1.84350 1.63883 1.21889 1.37992 0.93501 0.92386 0.88390 0.85961 0.86238 0.84611 0.91142 0.94615 0.91994 0.79914 0.94148 0.90452 0.93435 0.91954 0.92138 0.89969 0.87538 0.87600 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.89 71.98 0.71 -0.93 16 2 C -0.03 -0.27 6.56 29.85 0.20 -0.08 16 3 C 0.20 4.04 7.56 88.39 0.67 4.71 16 4 N -0.47 -12.35 7.81 -293.04 -2.29 -14.64 16 5 C -0.10 -2.87 6.68 40.41 0.27 -2.60 16 6 C 0.60 19.26 7.67 86.66 0.66 19.93 16 7 O -0.56 -19.52 14.32 -4.06 -0.06 -19.58 16 8 N -0.59 -18.59 2.68 -798.88 -2.14 -20.73 16 9 C 0.09 2.91 5.69 86.36 0.49 3.40 16 10 C -0.14 -5.11 5.66 30.68 0.17 -4.94 16 11 C 0.18 7.13 2.52 45.02 0.11 7.25 16 12 H 0.05 2.15 6.43 -2.39 -0.02 2.13 16 13 N -0.74 -38.05 5.12 -322.81 -1.65 -39.70 16 14 C -0.24 -13.26 9.93 84.03 0.83 -12.42 16 15 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 16 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 17 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 18 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 C -0.12 -4.35 5.02 30.67 0.15 -4.19 16 23 C 0.14 4.44 3.22 44.97 0.14 4.59 16 24 H 0.10 2.98 7.00 -2.39 -0.02 2.96 16 25 C -0.15 -3.98 9.03 71.98 0.65 -3.33 16 26 C 0.04 1.03 7.44 25.18 0.19 1.21 16 27 C -0.07 -1.21 9.82 71.23 0.70 -0.51 16 28 O -0.19 -4.01 10.73 0.33 0.00 -4.00 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.14 4.18 4.09 -20.89 -0.09 4.09 16 35 H 0.07 2.07 7.51 -2.39 -0.02 2.05 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.37 20.76 7.80 -92.71 -0.72 20.03 16 39 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.06 1.65 5.73 -2.39 -0.01 1.64 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.09 1.98 6.63 -2.39 -0.02 1.96 16 Total: -1.00 -71.27 373.93 2.78 -68.49 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.19 Total: 33.84 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 6.43 Total: 8.13 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -5.80 Total: -135.21 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -71.27 2.78 -68.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044769714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.119 kcal (2) G-P(sol) polarization free energy of solvation -71.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds