Wall clock time and date at job start Tue Mar 31 2020 13:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47310 * 2 1 4 4 N 1.30620 * 125.42641 * 90.01821 * 3 2 1 5 5 C 1.33689 * 108.99859 * 179.74768 * 4 3 2 6 6 C 1.50704 * 126.27517 * 180.26206 * 5 4 3 7 7 C 1.36342 * 107.45279 * 0.37131 * 5 4 3 8 8 C 1.46721 * 126.64619 * 179.89778 * 7 5 4 9 9 O 1.21677 * 120.00002 * 5.87612 * 8 7 5 10 10 N 1.34777 * 119.99923 * 185.87946 * 8 7 5 11 11 C 1.46923 * 120.63473 * 353.97728 * 10 8 7 12 12 C 1.53189 * 108.77636 * 126.41467 * 11 10 8 13 13 C 1.53038 * 109.31161 * 54.64029 * 12 11 10 14 14 H 1.08996 * 109.45988 * 58.64169 * 13 12 11 15 15 N 1.46501 * 109.45634 * 178.61266 * 13 12 11 16 16 C 1.36933 * 120.00225 * 275.01973 * 15 13 12 17 17 H 1.07999 * 119.99762 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99986 * 179.97438 * 16 15 13 19 19 N 1.31612 * 120.00111 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99623 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47460 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46964 * 240.00492 * 20 18 16 23 23 H 1.48500 * 109.47163 * 120.00670 * 20 18 16 24 24 C 1.53039 * 109.52447 * 298.62505 * 13 12 11 25 25 C 1.46929 * 120.62850 * 174.00210 * 10 8 7 26 26 H 1.08996 * 109.58556 * 113.65337 * 25 10 8 27 27 C 1.52996 * 109.58686 * 353.37030 * 25 10 8 28 28 O 1.33664 * 125.42340 * 269.99801 * 3 2 1 29 29 H 1.09003 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47427 * 300.00461 * 1 2 3 31 31 H 1.09000 * 109.46717 * 60.00422 * 1 2 3 32 32 H 1.08993 * 109.47427 * 239.99539 * 2 1 3 33 33 H 1.09005 * 109.47039 * 119.99920 * 2 1 3 34 34 H 1.09005 * 109.46578 * 270.13174 * 6 5 4 35 35 H 1.08998 * 109.47151 * 30.13326 * 6 5 4 36 36 H 1.08997 * 109.47268 * 150.13575 * 6 5 4 37 37 H 1.09001 * 109.58259 * 6.62563 * 11 10 8 38 38 H 1.09003 * 109.58576 * 246.20856 * 11 10 8 39 39 H 1.08996 * 109.49756 * 294.68452 * 12 11 10 40 40 H 1.09003 * 109.49227 * 174.59000 * 12 11 10 41 41 H 0.97001 * 119.99531 * 95.02875 * 15 13 12 42 42 H 0.96999 * 120.00230 * 359.97438 * 19 18 16 43 43 H 1.08997 * 109.49629 * 181.32837 * 24 13 12 44 44 H 1.09004 * 109.49992 * 301.42485 * 24 13 12 45 45 H 1.09001 * 109.47109 * 66.28323 * 27 25 10 46 46 H 1.08996 * 109.47133 * 186.28064 * 27 25 10 47 47 H 1.08997 * 109.47437 * 306.28349 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1345 1.0644 5 6 2.7177 3.3416 0.6863 6 6 3.1247 4.4693 1.5995 7 6 2.7208 3.3664 -0.6769 8 6 3.1193 4.4906 -1.5314 9 8 3.5949 5.4941 -1.0341 10 7 2.9585 4.4117 -2.8672 11 6 2.5098 3.1612 -3.4947 12 6 1.2853 3.4584 -4.3658 13 6 1.6283 4.5718 -5.3582 14 1 2.4724 4.2618 -5.9742 15 7 0.4696 4.8357 -6.2151 16 6 0.2612 4.0788 -7.3370 17 1 0.9507 3.2870 -7.5900 18 6 -0.8370 4.3286 -8.1486 19 7 -1.6775 5.2932 -7.8400 20 14 -1.1216 3.2956 -9.6788 21 1 -0.0418 2.2836 -9.8008 22 1 -1.1158 4.1733 -10.8766 23 1 -2.4340 2.6085 -9.5750 24 6 1.9963 5.8444 -4.5920 25 6 3.2291 5.5744 -3.7237 26 1 4.0891 5.3669 -4.3605 27 6 3.5200 6.7973 -2.8516 28 8 2.2906 2.1512 -1.0892 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2551 5.0871 1.8237 35 1 3.5278 4.0594 2.5255 36 1 3.8855 5.0770 1.1096 37 1 2.2425 2.4402 -2.7222 38 1 3.3096 2.7560 -4.1146 39 1 0.4573 3.7776 -3.7328 40 1 1.0005 2.5591 -4.9120 41 1 -0.1497 5.5467 -5.9876 42 1 -1.5299 5.8294 -7.0453 43 1 2.2176 6.6436 -5.2993 44 1 1.1616 6.1409 -3.9568 45 1 4.4520 6.6426 -2.3080 46 1 3.6102 7.6810 -3.4833 47 1 2.7050 6.9397 -2.1419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044812861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:08 Heat of formation + Delta-G solvation = -9.856472 kcal Electronic energy + Delta-G solvation = -28311.947871 eV Core-core repulsion = 24496.437442 eV Total energy + Delta-G solvation = -3815.510429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.64385 -41.56893 -39.01173 -36.86168 -36.24435 -35.27184 -34.08332 -33.83536 -31.72450 -30.94746 -29.00991 -28.20126 -26.07908 -25.72982 -24.69037 -23.97627 -22.49138 -22.32350 -21.77169 -20.81108 -19.38484 -18.40175 -18.15298 -17.39606 -17.29179 -16.85064 -16.25714 -15.91083 -15.80519 -15.57134 -15.39108 -15.06652 -14.83213 -14.74438 -14.46904 -14.29359 -14.06370 -13.65656 -13.55704 -13.36649 -13.29160 -13.13325 -12.77012 -12.67153 -12.65592 -12.45757 -12.18590 -12.14690 -12.08299 -12.07235 -11.86025 -11.72345 -11.63779 -11.23159 -10.90715 -10.50672 -10.06405 -9.70440 -9.14335 -8.38737 -5.33483 -0.34707 1.16793 1.24815 1.58794 1.69930 1.78859 1.81204 1.91913 2.70809 2.77413 3.29166 3.40115 3.53695 3.57857 3.70948 3.86147 3.93150 4.03508 4.11634 4.16794 4.17882 4.19364 4.32509 4.41649 4.49319 4.54807 4.55640 4.63737 4.69562 4.76300 4.78013 4.84956 4.88827 4.91938 4.98462 5.05194 5.11958 5.13995 5.21954 5.27880 5.32938 5.35204 5.55769 5.61018 6.10032 6.45501 6.48884 6.82834 7.07960 7.97810 8.10675 9.13066 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.003665 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.782327 B = 7637.204983 C = 9258.980230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.031 4.031 3 C 0.221 3.779 4 N -0.509 5.509 5 C 0.076 3.924 6 C -0.078 4.078 7 C -0.142 4.142 8 C 0.605 3.395 9 O -0.525 6.525 10 N -0.595 5.595 11 C 0.101 3.899 12 C -0.134 4.134 13 C 0.178 3.822 14 H 0.050 0.950 15 N -0.749 5.749 16 C -0.326 4.326 17 H 0.070 0.930 18 C -0.105 4.105 19 N -0.978 5.978 20 Si 1.131 2.869 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.124 4.124 25 C 0.152 3.848 26 H 0.093 0.907 27 C -0.129 4.129 28 O -0.184 6.184 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.357 0.643 42 H 0.243 0.757 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.485 -9.294 17.656 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.069 4.069 3 C 0.017 3.983 4 N -0.238 5.238 5 C -0.048 4.048 6 C -0.135 4.135 7 C -0.196 4.196 8 C 0.393 3.607 9 O -0.406 6.406 10 N -0.326 5.326 11 C -0.021 4.021 12 C -0.175 4.175 13 C 0.070 3.930 14 H 0.068 0.932 15 N -0.390 5.390 16 C -0.457 4.457 17 H 0.088 0.912 18 C -0.296 4.296 19 N -0.627 5.627 20 Si 0.956 3.044 21 H -0.193 1.193 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.163 4.163 25 C 0.050 3.950 26 H 0.110 0.890 27 C -0.186 4.186 28 O -0.072 6.072 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.189 0.811 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.837 -9.417 17.066 22.302 hybrid contribution 0.329 0.946 0.541 1.139 sum 11.166 -8.471 17.607 22.504 Atomic orbital electron populations 1.21790 0.92360 1.04573 1.02019 1.20530 0.97214 0.81578 1.07551 1.27738 0.94248 0.97701 0.78635 1.70384 1.18984 1.03831 1.30617 1.22438 0.96400 0.94587 0.91387 1.20431 1.02851 0.92613 0.97586 1.23032 1.14309 0.86898 0.95377 1.16645 0.78439 0.84243 0.81325 1.90863 1.46025 1.29410 1.74252 1.48156 1.65248 1.13949 1.05257 1.22343 0.96816 0.85214 0.97726 1.22389 0.96837 1.00658 0.97594 1.20347 0.89288 0.93281 0.90095 0.93245 1.42669 1.28623 1.40257 1.27460 1.20424 1.09788 1.13155 1.02323 0.91198 1.27158 0.94202 1.01757 1.06515 1.70932 1.40011 1.23326 1.28408 0.82573 0.75891 0.73936 0.71999 1.19321 1.22025 1.22009 1.22176 0.97600 0.98321 0.98225 1.21369 0.96929 0.85411 0.91285 0.88964 1.22088 1.03227 0.95142 0.98125 1.84603 1.64077 1.22228 1.36338 0.88059 0.92715 0.93294 0.86287 0.85426 0.89625 0.89035 0.89046 0.87125 0.89368 0.94208 0.91577 0.81145 0.94635 0.90425 0.93094 0.90468 0.91805 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.89 71.98 0.71 -1.11 16 2 C -0.03 -0.37 6.56 29.85 0.20 -0.18 16 3 C 0.22 4.76 7.57 88.29 0.67 5.43 16 4 N -0.51 -12.70 11.26 -291.06 -3.28 -15.98 16 5 C 0.08 1.98 7.16 41.83 0.30 2.28 16 6 C -0.08 -1.66 9.94 71.24 0.71 -0.95 16 7 C -0.14 -3.93 6.89 24.05 0.17 -3.77 16 8 C 0.61 17.67 7.47 86.46 0.65 18.32 16 9 O -0.53 -16.01 10.34 -4.28 -0.04 -16.05 16 10 N -0.59 -16.77 2.97 -799.68 -2.38 -19.14 16 11 C 0.10 2.74 6.34 86.36 0.55 3.29 16 12 C -0.13 -4.59 5.66 30.67 0.17 -4.42 16 13 C 0.18 6.83 2.73 45.02 0.12 6.95 16 14 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 15 N -0.75 -37.08 5.12 -322.82 -1.65 -38.73 16 16 C -0.33 -17.82 9.93 84.03 0.83 -16.99 16 17 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 18 C -0.11 -6.03 5.50 84.86 0.47 -5.57 16 19 N -0.98 -61.12 13.70 21.65 0.30 -60.83 16 20 Si 1.13 51.30 29.92 68.60 2.05 53.35 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 24 C -0.12 -4.06 4.84 30.67 0.15 -3.92 16 25 C 0.15 4.19 3.49 44.97 0.16 4.35 16 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 27 C -0.13 -3.37 7.61 71.98 0.55 -2.82 16 28 O -0.18 -4.58 7.26 -7.12 -0.05 -4.63 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 2.06 6.36 -2.39 -0.02 2.04 16 37 H 0.11 2.86 3.76 -53.03 -0.20 2.66 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.36 18.83 6.63 -92.71 -0.61 18.21 16 42 H 0.24 15.22 6.77 -92.71 -0.63 14.59 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.08 2.05 6.56 -2.39 -0.02 2.04 16 46 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.05 1.44 6.93 -2.39 -0.02 1.42 16 Total: -1.00 -69.97 370.38 1.66 -68.31 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.32 Total: 32.81 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.39 Total: 0.90 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -7.01 Total: -134.68 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.10 Total: -20.68 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -69.97 1.66 -68.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044812861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.452 kcal (2) G-P(sol) polarization free energy of solvation -69.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds