Wall clock time and date at job start Tue Mar 31 2020 12:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47383 * 2 1 4 4 C 1.36774 * 125.80410 * 270.00219 * 3 2 1 5 5 C 1.47266 * 126.93955 * 359.93735 * 4 3 2 6 6 O 1.21628 * 120.00014 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99873 * 180.27719 * 5 4 3 8 8 C 1.46491 * 120.00120 * 179.72924 * 7 5 4 9 9 C 1.53004 * 109.47464 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.67958 * 300.77077 * 9 8 7 11 11 C 1.53295 * 109.68310 * 180.24684 * 9 8 7 12 12 O 1.42958 * 109.22034 * 187.97557 * 11 9 8 13 13 C 1.42961 * 114.17099 * 62.58463 * 12 11 9 14 14 C 1.53299 * 109.21918 * 297.42058 * 13 12 11 15 15 N 1.47152 * 109.67793 * 61.28504 * 9 8 7 16 16 C 1.36937 * 120.98473 * 350.23582 * 15 9 8 17 17 H 1.08002 * 119.99793 * 31.05330 * 16 15 9 18 18 C 1.38814 * 120.00114 * 211.05300 * 16 15 9 19 19 N 1.31615 * 119.99792 * 10.78633 * 18 16 15 20 20 Si 1.86799 * 119.99961 * 190.77890 * 18 16 15 21 21 H 1.48500 * 109.47251 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47129 * 120.00213 * 20 18 16 23 23 H 1.48502 * 109.47064 * 240.00142 * 20 18 16 24 24 C 1.46680 * 106.11390 * 180.20663 * 4 3 2 25 25 C 1.34483 * 106.33849 * 359.62116 * 24 4 3 26 26 N 1.34656 * 125.80191 * 89.97362 * 3 2 1 27 27 C 1.46503 * 124.85018 * 0.04290 * 26 3 2 28 28 H 1.08994 * 109.47856 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47280 * 300.00452 * 1 2 3 30 30 H 1.09007 * 109.46732 * 59.99684 * 1 2 3 31 31 H 1.09000 * 109.46755 * 240.00104 * 2 1 3 32 32 H 1.08997 * 109.46853 * 120.00437 * 2 1 3 33 33 H 0.96998 * 120.00155 * 359.72614 * 7 5 4 34 34 H 1.09007 * 109.47065 * 299.99743 * 8 7 5 35 35 H 1.08999 * 109.47729 * 59.99728 * 8 7 5 36 36 H 1.08996 * 109.51399 * 307.90304 * 11 9 8 37 37 H 1.09003 * 109.51189 * 68.00343 * 11 9 8 38 38 H 1.09003 * 109.51217 * 57.34115 * 13 12 11 39 39 H 1.08992 * 109.51858 * 177.49042 * 13 12 11 40 40 H 1.09001 * 109.68002 * 172.02555 * 14 13 12 41 41 H 1.08996 * 109.67645 * 292.57177 * 14 13 12 42 42 H 0.97003 * 119.99980 * 180.02562 * 19 18 16 43 43 H 1.08005 * 126.83416 * 179.77340 * 24 4 3 44 44 H 1.08003 * 125.57679 * 180.12452 * 25 24 4 45 45 H 1.09004 * 109.46733 * 89.99932 * 27 26 3 46 46 H 1.09004 * 109.47455 * 209.99509 * 27 26 3 47 47 H 1.08997 * 109.47324 * 330.00020 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2991 2.1752 -1.1093 5 6 2.1546 1.7629 -2.5156 6 8 1.7598 0.6442 -2.7839 7 7 2.4647 2.6235 -3.5054 8 6 2.3267 2.2114 -4.9043 9 6 2.7397 3.3661 -5.8193 10 1 2.1100 4.2337 -5.6226 11 6 2.5912 2.9420 -7.2850 12 8 3.1516 3.9526 -8.1265 13 6 4.5532 4.1610 -7.9372 14 6 4.8023 4.6474 -6.5050 15 7 4.1493 3.7114 -5.5759 16 6 4.8331 3.1772 -4.5166 17 1 4.5862 2.1890 -4.1575 18 6 5.8437 3.9058 -3.9043 19 7 6.0052 5.1793 -4.1946 20 14 6.9740 3.0788 -2.6683 21 1 6.5862 1.6531 -2.5194 22 1 8.3771 3.1622 -3.1475 23 1 6.8577 3.7635 -1.3557 24 6 2.7643 3.4755 -0.6151 25 6 2.7326 3.4033 0.7275 26 7 2.2945 2.1636 1.0921 27 6 2.1330 1.7059 2.4744 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.7792 3.5158 -3.2914 34 1 2.9670 1.3500 -5.0943 35 1 1.2890 1.9437 -5.1037 36 1 3.1167 2.0009 -7.4467 37 1 1.5348 2.8145 -7.5218 38 1 5.0860 3.2242 -8.1014 39 1 4.9085 4.9112 -8.6435 40 1 5.8739 4.6734 -6.3072 41 1 4.3807 5.6444 -6.3775 42 1 6.7116 5.6884 -3.7670 43 1 3.0692 4.3232 -1.2108 44 1 3.0124 4.1956 1.4061 45 1 3.0620 1.2504 2.8172 46 1 1.8879 2.5553 3.1122 47 1 1.3289 0.9716 2.5224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051113411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:19 Heat of formation + Delta-G solvation = -7.438411 kcal Electronic energy + Delta-G solvation = -28660.860541 eV Core-core repulsion = 24845.454967 eV Total energy + Delta-G solvation = -3815.405574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.13127 -38.88725 -37.98097 -35.20122 -33.71208 -33.21709 -32.65812 -31.32813 -30.34035 -28.12144 -27.24940 -26.72735 -25.09201 -23.39158 -23.29855 -21.94736 -21.29018 -19.64233 -19.56446 -18.59062 -17.20201 -16.54067 -15.79834 -15.57481 -15.43394 -15.26617 -14.77654 -14.53966 -14.17834 -14.16370 -13.87944 -13.69345 -13.57157 -13.18072 -13.12750 -12.77175 -12.65825 -12.43476 -12.33844 -12.04720 -11.78518 -11.67771 -11.47652 -11.25839 -10.97712 -10.82346 -10.77239 -10.63714 -10.33625 -10.16402 -9.97212 -9.59986 -9.23113 -8.88023 -8.58720 -8.36923 -8.10333 -7.80716 -6.65589 -5.83285 -3.32139 2.13375 2.75577 2.96296 3.34458 3.43200 3.48721 4.09147 4.24115 4.43495 4.59682 4.68105 4.79727 5.00199 5.07417 5.19411 5.22763 5.27529 5.35313 5.45228 5.61877 5.67322 5.70261 5.74689 5.81535 5.94282 5.96386 6.08950 6.14497 6.19076 6.21872 6.28522 6.32369 6.32780 6.38885 6.54394 6.61222 6.85486 7.09298 7.13428 7.29840 7.35854 7.45602 7.54338 7.80638 7.92151 8.36108 8.50958 9.11075 9.14362 9.73955 10.32579 11.23478 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.004676 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.849310 B = 5986.818025 C = 7333.470178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 C 0.096 3.904 4 C -0.221 4.221 5 C 0.585 3.415 6 O -0.574 6.574 7 N -0.691 5.691 8 C 0.138 3.862 9 C 0.125 3.875 10 H 0.041 0.959 11 C 0.056 3.944 12 O -0.393 6.393 13 C 0.035 3.965 14 C 0.144 3.856 15 N -0.591 5.591 16 C -0.249 4.249 17 H 0.075 0.925 18 C 0.011 3.989 19 N -0.902 5.902 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.288 1.288 24 C -0.154 4.154 25 C -0.029 4.029 26 N -0.449 5.449 27 C 0.070 3.930 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.414 0.586 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.029 0.971 42 H 0.253 0.747 43 H 0.149 0.851 44 H 0.163 0.837 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 -4.521 8.870 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 C -0.020 4.020 4 C -0.231 4.231 5 C 0.373 3.627 6 O -0.457 6.457 7 N -0.341 5.341 8 C 0.014 3.986 9 C 0.018 3.982 10 H 0.058 0.942 11 C -0.023 4.023 12 O -0.312 6.312 13 C -0.043 4.043 14 C 0.019 3.981 15 N -0.317 5.317 16 C -0.378 4.378 17 H 0.093 0.907 18 C -0.188 4.188 19 N -0.546 5.546 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.178 4.178 25 C -0.154 4.154 26 N -0.126 5.126 27 C -0.071 4.071 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.252 0.748 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.167 0.833 44 H 0.181 0.819 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.371 -5.138 8.952 13.290 hybrid contribution 1.279 0.202 1.117 1.710 sum -7.092 -4.936 10.069 13.268 Atomic orbital electron populations 1.21632 0.94480 1.01554 1.01838 1.20261 0.96278 0.89552 1.03808 1.20212 1.02202 0.94397 0.85211 1.20223 1.14684 0.95882 0.92312 1.17284 0.76959 0.84292 0.84122 1.90648 1.49665 1.20707 1.84649 1.45755 1.65456 1.17903 1.05023 1.21108 0.99270 0.97460 0.80783 1.21430 0.88714 0.95329 0.92764 0.94195 1.22864 0.97651 0.90666 0.91109 1.87792 1.24005 1.58352 1.61027 1.23352 0.81160 0.99673 1.00124 1.21409 1.00116 0.91702 0.84905 1.44111 1.04717 1.53421 1.29417 1.19294 1.13960 0.97822 1.06742 0.90735 1.25083 1.00810 0.94853 0.98069 1.69994 1.33433 1.06135 1.45074 0.86316 0.80628 0.79355 0.81256 1.20176 1.21793 1.21430 1.22184 1.04530 0.97607 0.93451 1.21621 1.09254 0.88201 0.96319 1.43446 1.51723 1.11681 1.05737 1.22013 1.02947 1.01571 0.80616 0.92340 0.93775 0.91718 0.87539 0.92096 0.74802 0.91666 0.92531 0.93531 0.89950 0.94159 0.90311 0.88976 0.95329 0.93660 0.83299 0.81945 0.91082 0.89874 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.89 37.16 0.37 -1.28 16 2 C -0.06 -0.83 5.31 -27.88 -0.15 -0.98 16 3 C 0.10 1.51 6.14 -81.88 -0.50 1.01 16 4 C -0.22 -4.10 6.29 -103.35 -0.65 -4.75 16 5 C 0.58 11.97 7.81 -12.59 -0.10 11.87 16 6 O -0.57 -12.49 14.81 5.25 0.08 -12.42 16 7 N -0.69 -14.03 3.80 -61.44 -0.23 -14.27 16 8 C 0.14 2.69 4.44 -4.04 -0.02 2.68 16 9 C 0.12 2.52 3.20 -67.42 -0.22 2.30 16 10 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 11 C 0.06 1.02 6.29 37.31 0.23 1.26 16 12 O -0.39 -7.80 10.74 -35.23 -0.38 -8.18 16 13 C 0.03 0.68 6.99 37.31 0.26 0.94 16 14 C 0.14 3.33 5.38 -3.53 -0.02 3.31 16 15 N -0.59 -13.90 3.03 -164.29 -0.50 -14.40 16 16 C -0.25 -6.32 7.11 -15.06 -0.11 -6.42 16 17 H 0.08 1.97 5.81 -52.49 -0.30 1.66 16 18 C 0.01 0.29 5.06 -17.43 -0.09 0.20 16 19 N -0.90 -24.56 11.13 55.49 0.62 -23.95 16 20 Si 0.89 21.57 29.57 -169.99 -5.03 16.54 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.15 -2.64 10.56 -37.50 -0.40 -3.04 16 25 C -0.03 -0.41 11.34 -16.82 -0.19 -0.60 16 26 N -0.45 -5.98 3.09 -119.88 -0.37 -6.35 16 27 C 0.07 0.59 10.61 59.85 0.63 1.22 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.11 1.72 6.46 -51.93 -0.34 1.38 16 32 H 0.06 0.67 7.58 -51.93 -0.39 0.28 16 33 H 0.41 8.80 6.50 -40.82 -0.27 8.53 16 34 H 0.07 1.37 7.53 -51.93 -0.39 0.98 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.09 2.34 6.32 -51.93 -0.33 2.01 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 43 H 0.15 2.62 7.70 -52.48 -0.40 2.21 16 44 H 0.16 1.80 8.06 -52.48 -0.42 1.37 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 47 H 0.08 0.58 7.47 -51.93 -0.39 0.19 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -30.95 373.31 -8.56 -39.51 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -7.44 Total: 10.16 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.94 Total: 7.72 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.48 Total: -58.96 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.30 Total: -20.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.95 -8.56 -39.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051113411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.072 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds