Wall clock time and date at job start Tue Mar 31 2020 13:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46653 * 2 1 4 4 C 1.50703 * 109.46911 * 180.02562 * 3 2 1 5 5 O 1.33493 * 126.82602 * 270.00081 * 4 3 2 6 6 N 1.20660 * 113.15071 * 180.02562 * 5 4 3 7 7 C 1.30007 * 112.30313 * 359.73076 * 6 5 4 8 8 C 1.50705 * 127.33395 * 180.27463 * 7 6 5 9 9 C 1.37361 * 126.82769 * 89.99845 * 4 3 2 10 10 C 1.47396 * 128.56865 * 359.96402 * 9 4 3 11 11 O 1.21608 * 119.99943 * 89.99321 * 10 9 4 12 12 N 1.34775 * 119.99844 * 270.00298 * 10 9 4 13 13 C 1.47426 * 125.64633 * 179.97438 * 12 10 9 14 14 C 1.54910 * 104.83306 * 155.91253 * 13 12 10 15 15 H 1.08999 * 111.03912 * 278.92834 * 14 13 12 16 16 C 1.52993 * 111.00342 * 155.08481 * 14 13 12 17 17 C 1.55164 * 101.57995 * 37.01076 * 14 13 12 18 18 H 1.08995 * 110.71818 * 205.95670 * 17 14 13 19 19 N 1.46499 * 110.71873 * 82.86049 * 17 14 13 20 20 C 1.36931 * 120.00122 * 155.00085 * 19 17 14 21 21 H 1.08002 * 120.00098 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99535 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00187 * 180.27849 * 22 20 19 25 25 H 1.48497 * 109.47173 * 179.72427 * 24 22 20 26 26 H 1.48506 * 109.46866 * 299.71963 * 24 22 20 27 27 H 1.48501 * 109.47438 * 59.72083 * 24 22 20 28 28 C 1.47016 * 125.65109 * 0.04837 * 12 10 9 29 29 H 1.09006 * 109.47262 * 299.99682 * 1 2 3 30 30 H 1.08990 * 109.47706 * 60.00239 * 1 2 3 31 31 H 1.09002 * 109.46823 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47351 * 240.00376 * 2 1 3 33 33 H 1.08997 * 109.47110 * 119.99481 * 2 1 3 34 34 H 1.08996 * 109.46935 * 60.00121 * 3 2 1 35 35 H 1.08997 * 109.46939 * 299.99586 * 3 2 1 36 36 H 1.08999 * 109.47300 * 270.14570 * 8 7 6 37 37 H 1.09004 * 109.47093 * 30.15277 * 8 7 6 38 38 H 1.09005 * 109.47265 * 150.14729 * 8 7 6 39 39 H 1.09009 * 110.36585 * 37.07854 * 13 12 10 40 40 H 1.08993 * 110.46239 * 274.80070 * 13 12 10 41 41 H 1.09000 * 109.47275 * 307.80490 * 16 14 13 42 42 H 1.08999 * 109.47291 * 67.80741 * 16 14 13 43 43 H 1.09009 * 109.46939 * 187.81069 * 16 14 13 44 44 H 0.97001 * 119.99790 * 334.99602 * 19 17 14 45 45 H 0.97005 * 119.99717 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.88636 * 61.59876 * 28 12 10 47 47 H 1.09006 * 109.88465 * 300.43595 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 -0.0006 5 8 4.3475 1.4426 1.0676 6 7 5.5198 1.4432 0.7818 7 6 5.7143 1.4381 -0.5036 8 6 7.0358 1.4314 -1.2280 9 6 4.3698 1.4429 -1.1005 10 6 3.9976 1.4423 -2.5267 11 8 3.8433 2.4952 -3.1152 12 7 3.8280 0.2748 -3.1784 13 6 3.4571 0.1292 -4.5977 14 6 3.9836 -1.2700 -5.0037 15 1 5.0490 -1.2363 -5.2311 16 6 3.1910 -1.8326 -6.1852 17 6 3.7160 -2.0898 -3.7137 18 1 4.4050 -2.9313 -3.6417 19 7 2.3272 -2.5544 -3.6736 20 6 1.9989 -3.6695 -2.9498 21 1 2.7638 -4.2062 -2.4081 22 6 0.6832 -4.1101 -2.9122 23 7 -0.2490 -3.4558 -3.5721 24 14 0.2341 -5.6267 -1.9185 25 1 -1.2241 -5.8816 -2.0361 26 1 0.9848 -6.7985 -2.4371 27 1 0.5846 -5.4059 -0.4924 28 6 3.9808 -1.0643 -2.5912 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 7.3590 2.4574 -1.4039 37 1 7.7799 0.9148 -0.6216 38 1 6.9244 0.9169 -2.1825 39 1 3.9368 0.9034 -5.1966 40 1 2.3745 0.1759 -4.7154 41 1 2.1253 -1.7920 -5.9602 42 1 3.3970 -1.2395 -7.0763 43 1 3.4861 -2.8671 -6.3610 44 1 1.6403 -2.0722 -4.1598 45 1 -1.1686 -3.7635 -3.5455 46 1 3.2586 -1.2008 -1.7863 47 1 4.9937 -1.1877 -2.2080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054637637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:27 Heat of formation + Delta-G solvation = 26.016564 kcal Electronic energy + Delta-G solvation = -28971.212114 eV Core-core repulsion = 25157.257256 eV Total energy + Delta-G solvation = -3813.954858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.81417 -39.81497 -37.64664 -35.55647 -34.54436 -33.98195 -32.43305 -31.58703 -30.54987 -28.85164 -27.82537 -27.30938 -26.27384 -24.15309 -23.67000 -22.07435 -21.72775 -20.18921 -19.38267 -19.19967 -17.78669 -17.60915 -17.12956 -16.35392 -15.81140 -15.45805 -14.97870 -14.67239 -14.38273 -13.99722 -13.66530 -13.51836 -13.41536 -13.20915 -13.12346 -13.00584 -12.79959 -12.62088 -12.25889 -12.19270 -12.01362 -11.66341 -11.44656 -11.21825 -11.13317 -11.08843 -10.98313 -10.83366 -10.62160 -10.37684 -10.34175 -10.08937 -9.96645 -9.85401 -9.70010 -9.29251 -9.06112 -8.36393 -7.13164 -5.89237 -3.19384 1.36863 1.93540 2.55560 2.85193 3.33211 3.35474 3.41196 3.42025 4.08709 4.25017 4.47628 4.64382 4.88306 5.00505 5.06477 5.10617 5.14183 5.22466 5.29759 5.35424 5.41031 5.47120 5.52522 5.57770 5.69608 5.71565 5.74909 5.75837 5.84041 5.89565 5.93708 5.96596 6.11222 6.16912 6.27765 6.29388 6.30375 6.39561 6.50091 6.53295 6.57870 6.74738 6.87999 7.58508 7.71661 8.24416 8.25774 8.28566 9.40636 9.93968 10.29508 11.32291 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.005142 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.841655 B = 5444.466375 C = 6657.720324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C -0.044 4.044 4 C 0.026 3.974 5 O 0.094 5.906 6 N -0.359 5.359 7 C 0.052 3.948 8 C -0.075 4.075 9 C -0.239 4.239 10 C 0.611 3.389 11 O -0.541 6.541 12 N -0.593 5.593 13 C 0.115 3.885 14 C -0.115 4.115 15 H 0.078 0.922 16 C -0.129 4.129 17 C 0.173 3.827 18 H 0.073 0.927 19 N -0.709 5.709 20 C -0.247 4.247 21 H 0.070 0.930 22 C -0.003 4.003 23 N -0.927 5.927 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.286 1.286 28 C 0.069 3.931 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.080 0.920 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.403 7.906 2.947 11.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.082 4.082 4 C -0.037 4.037 5 O 0.033 5.967 6 N -0.066 5.066 7 C -0.110 4.110 8 C -0.132 4.132 9 C -0.246 4.246 10 C 0.397 3.603 11 O -0.419 6.419 12 N -0.325 5.325 13 C -0.007 4.007 14 C -0.135 4.135 15 H 0.097 0.903 16 C -0.187 4.187 17 C 0.061 3.939 18 H 0.091 0.909 19 N -0.349 5.349 20 C -0.378 4.378 21 H 0.088 0.912 22 C -0.200 4.200 23 N -0.574 5.574 24 Si 0.734 3.266 25 H -0.217 1.217 26 H -0.212 1.212 27 H -0.212 1.212 28 C -0.057 4.057 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.223 0.777 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.061 8.350 3.836 12.905 hybrid contribution -0.770 -0.695 -0.149 1.048 sum 8.291 7.655 3.687 11.872 Atomic orbital electron populations 1.21666 0.94376 1.02905 1.01275 1.21626 0.97063 0.93560 1.03886 1.20433 0.82609 1.00244 1.04904 1.24690 0.95779 0.98294 0.84964 1.84504 1.11072 1.68066 1.33030 1.73571 0.96128 1.20424 1.16527 1.24673 0.95975 1.01254 0.89104 1.20186 0.89818 1.03664 0.99534 1.21824 0.92830 1.14854 0.95094 1.16453 0.77206 0.82796 0.83810 1.90790 1.52423 1.30846 1.67857 1.48348 1.66558 1.05771 1.11831 1.22326 1.00435 0.97386 0.80582 1.22660 0.99749 0.94164 0.96962 0.90344 1.21528 1.01391 1.00484 0.95300 1.21197 0.89543 0.93150 0.90059 0.90886 1.42402 1.02292 1.31333 1.58920 1.19153 0.92851 1.02655 1.23175 0.91194 1.24692 0.95896 0.99075 1.00373 1.69642 1.01032 1.41029 1.45697 0.86348 0.77268 0.83066 0.79955 1.21684 1.21235 1.21217 1.23422 1.00243 0.81933 1.00106 0.93189 0.92460 0.91522 0.89875 0.91507 0.89002 0.88440 0.89810 0.90014 0.89953 0.91073 0.90913 0.91140 0.93730 0.92083 0.77738 0.93331 0.90169 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.74 5.92 -26.73 -0.16 -1.90 16 3 C -0.04 -0.56 5.66 -27.88 -0.16 -0.71 16 4 C 0.03 0.38 6.80 -34.63 -0.24 0.15 16 5 O 0.09 1.40 11.06 18.65 0.21 1.60 16 6 N -0.36 -5.47 12.01 34.78 0.42 -5.05 16 7 C 0.05 0.76 7.59 -79.77 -0.61 0.15 16 8 C -0.07 -0.82 10.49 36.01 0.38 -0.44 16 9 C -0.24 -3.76 5.42 -102.89 -0.56 -4.32 16 10 C 0.61 10.51 7.63 -12.53 -0.10 10.41 16 11 O -0.54 -10.74 17.36 5.27 0.09 -10.65 16 12 N -0.59 -9.62 3.33 -171.80 -0.57 -10.20 16 13 C 0.11 1.78 6.33 -2.53 -0.02 1.76 16 14 C -0.12 -1.68 3.51 -88.47 -0.31 -1.99 16 15 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 16 C -0.13 -1.91 8.85 37.15 0.33 -1.58 16 17 C 0.17 2.98 3.39 -66.09 -0.22 2.76 16 18 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 19 N -0.71 -15.31 4.50 -51.65 -0.23 -15.54 16 20 C -0.25 -6.10 9.96 -15.06 -0.15 -6.25 16 21 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 22 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 23 N -0.93 -25.53 13.06 55.49 0.72 -24.81 16 24 Si 0.90 20.87 29.55 -169.99 -5.02 15.84 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.07 1.12 6.21 -3.07 -0.02 1.10 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.41 5.77 -51.93 -0.30 1.11 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.05 8.04 -51.92 -0.42 0.64 16 40 H 0.07 1.22 7.98 -51.93 -0.41 0.81 16 41 H 0.07 1.21 6.48 -51.93 -0.34 0.88 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 44 H 0.39 9.03 6.31 -40.82 -0.26 8.77 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.08 1.47 5.67 -51.93 -0.29 1.17 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -28.91 385.67 -7.61 -36.52 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.48 Total: 9.14 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.55 Total: -2.67 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.34 Total: -55.60 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.30 Total: -9.05 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.91 -7.61 -36.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054637637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.538 kcal (2) G-P(sol) polarization free energy of solvation -28.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds