Wall clock time and date at job start Tue Mar 31 2020 13:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47251 * 2 1 4 4 N 1.30618 * 125.42435 * 89.96939 * 3 2 1 5 5 C 1.33694 * 108.99377 * 179.75199 * 4 3 2 6 6 C 1.50701 * 126.27423 * 180.27286 * 5 4 3 7 7 C 1.36340 * 107.45103 * 0.43177 * 5 4 3 8 8 C 1.46724 * 126.64443 * 179.83708 * 7 5 4 9 9 O 1.21693 * 119.99645 * 359.71690 * 8 7 5 10 10 N 1.34772 * 120.00351 * 179.71646 * 8 7 5 11 11 C 1.46495 * 120.00117 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.49974 * 35.05707 * 11 10 8 13 13 C 1.53045 * 109.52728 * 155.14707 * 11 10 8 14 14 C 1.53034 * 109.53817 * 181.33253 * 13 11 10 15 15 C 1.53190 * 109.31105 * 298.62962 * 14 13 11 16 16 H 1.09007 * 109.70476 * 294.77843 * 15 14 13 17 17 C 1.53002 * 109.58753 * 174.42545 * 15 14 13 18 18 N 1.46920 * 108.77737 * 54.63787 * 15 14 13 19 19 C 1.36936 * 120.63115 * 126.40958 * 18 15 14 20 20 H 1.08004 * 120.00194 * 330.16138 * 19 18 15 21 21 C 1.38822 * 119.99855 * 150.15781 * 19 18 15 22 22 N 1.31620 * 119.99894 * 344.49212 * 21 19 18 23 23 Si 1.86801 * 119.99668 * 164.49152 * 21 19 18 24 24 H 1.48506 * 109.46773 * 90.00394 * 23 21 19 25 25 H 1.48501 * 109.46790 * 210.00013 * 23 21 19 26 26 H 1.48498 * 109.47308 * 330.00413 * 23 21 19 27 27 C 1.46925 * 118.74051 * 306.39056 * 18 15 14 28 28 O 1.33660 * 125.42006 * 269.99990 * 3 2 1 29 29 H 1.09004 * 109.47144 * 300.00374 * 1 2 3 30 30 H 1.09008 * 109.46944 * 60.00330 * 1 2 3 31 31 H 1.09005 * 109.47170 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47225 * 239.99578 * 2 1 3 33 33 H 1.09001 * 109.46606 * 119.99585 * 2 1 3 34 34 H 1.08997 * 109.46841 * 270.18762 * 6 5 4 35 35 H 1.09001 * 109.46995 * 30.19256 * 6 5 4 36 36 H 1.09001 * 109.47014 * 150.18827 * 6 5 4 37 37 H 0.97003 * 119.99707 * 359.97438 * 10 8 7 38 38 H 1.09006 * 109.45536 * 301.34817 * 13 11 10 39 39 H 1.08998 * 109.45983 * 61.31817 * 13 11 10 40 40 H 1.09004 * 109.49845 * 178.68155 * 14 13 11 41 41 H 1.09000 * 109.50226 * 58.58361 * 14 13 11 42 42 H 1.09000 * 109.47123 * 300.71303 * 17 15 14 43 43 H 1.09007 * 109.47196 * 60.71051 * 17 15 14 44 44 H 1.08998 * 109.47588 * 180.70933 * 17 15 14 45 45 H 0.96997 * 119.99522 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.58752 * 173.39286 * 27 18 15 47 47 H 1.08993 * 109.58659 * 293.82223 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2842 2.1348 1.0644 5 6 2.7170 3.3419 0.6862 6 6 3.1235 4.4697 1.5994 7 6 2.7199 3.3667 -0.6769 8 6 3.1173 4.4912 -1.5315 9 8 3.4868 5.5362 -1.0292 10 7 3.0732 4.3668 -2.8728 11 6 3.4705 5.4894 -3.7260 12 1 4.2890 6.0330 -3.2542 13 6 3.9263 4.9606 -5.0879 14 6 4.3728 6.1303 -5.9678 15 6 3.1900 7.0785 -6.1886 16 1 2.4143 6.5710 -6.7623 17 6 3.6621 8.3189 -6.9498 18 7 2.6535 7.4779 -4.8805 19 6 2.5064 8.8014 -4.5614 20 1 3.1723 9.5371 -4.9880 21 6 1.5014 9.1976 -3.6896 22 7 0.5119 8.3763 -3.4091 23 14 1.5534 10.8965 -2.9146 24 1 0.8352 11.8605 -3.7865 25 1 0.9001 10.8527 -1.5817 26 1 2.9662 11.3268 -2.7595 27 6 2.2774 6.4304 -3.9214 28 8 2.2906 2.1512 -1.0892 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.2536 5.0870 1.8237 35 1 3.5270 4.0601 2.5254 36 1 3.8839 5.0779 1.1094 37 1 2.7790 3.5337 -3.2732 38 1 4.7596 4.2716 -4.9495 39 1 3.0997 4.4386 -5.5699 40 1 4.7193 5.7509 -6.9292 41 1 5.1829 6.6679 -5.4750 42 1 4.4412 8.8220 -6.3771 43 1 4.0597 8.0204 -7.9199 44 1 2.8219 8.9979 -7.0949 45 1 -0.1901 8.6530 -2.7996 46 1 2.0117 6.8865 -2.9677 47 1 1.4282 5.8679 -4.3091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071962993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:49 Heat of formation + Delta-G solvation = -30.379190 kcal Electronic energy + Delta-G solvation = -28025.036099 eV Core-core repulsion = 24208.635738 eV Total energy + Delta-G solvation = -3816.400361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.59253 -40.97196 -39.26888 -36.69060 -35.95897 -35.19293 -34.67358 -32.50633 -31.83761 -31.62286 -29.03890 -27.68997 -26.78516 -25.70714 -24.09192 -23.22297 -22.55838 -22.06121 -21.61638 -20.99201 -19.23511 -18.37965 -18.11634 -17.45137 -17.00888 -16.83135 -15.95330 -15.79774 -15.76326 -15.49111 -15.24522 -14.99890 -14.88625 -14.50276 -14.36198 -14.25474 -14.09765 -13.62317 -13.51931 -13.31334 -13.09096 -12.79629 -12.70527 -12.64169 -12.55795 -12.31651 -12.20278 -12.15642 -12.11021 -12.00991 -11.95374 -11.69481 -11.49462 -11.20650 -11.11112 -10.55024 -10.33629 -9.89612 -8.63268 -7.86552 -5.32918 -0.34471 1.20351 1.25644 1.41031 1.45219 1.52822 1.90698 2.06907 2.50370 2.77754 3.30448 3.53334 3.56305 3.71758 3.90970 4.06669 4.12163 4.16664 4.19699 4.24010 4.36141 4.37560 4.56237 4.57163 4.59297 4.69594 4.72035 4.77660 4.87069 4.91754 4.95237 5.00152 5.00668 5.05449 5.14519 5.19910 5.25302 5.28818 5.32111 5.36532 5.54647 5.59503 5.70156 5.75035 6.24479 6.41371 6.50577 6.97241 7.15512 7.88482 8.38375 9.19038 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.003707 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.816247 B = 7550.667488 C = 8608.145726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C 0.231 3.769 4 N -0.508 5.508 5 C 0.073 3.927 6 C -0.079 4.079 7 C -0.135 4.135 8 C 0.602 3.398 9 O -0.546 6.546 10 N -0.696 5.696 11 C 0.131 3.869 12 H 0.062 0.938 13 C -0.108 4.108 14 C -0.117 4.117 15 C 0.153 3.847 16 H 0.021 0.979 17 C -0.130 4.130 18 N -0.602 5.602 19 C -0.251 4.251 20 H 0.076 0.924 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.956 3.044 24 H -0.279 1.279 25 H -0.300 1.300 26 H -0.270 1.270 27 C 0.181 3.819 28 O -0.187 6.187 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.412 0.588 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.244 0.756 46 H 0.043 0.957 47 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -19.575 1.800 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 C 0.025 3.975 4 N -0.238 5.238 5 C -0.050 4.050 6 C -0.136 4.136 7 C -0.190 4.190 8 C 0.388 3.612 9 O -0.425 6.425 10 N -0.346 5.346 11 C 0.025 3.975 12 H 0.080 0.920 13 C -0.146 4.146 14 C -0.156 4.156 15 C 0.047 3.953 16 H 0.039 0.961 17 C -0.187 4.187 18 N -0.326 5.326 19 C -0.381 4.381 20 H 0.093 0.907 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.785 3.215 24 H -0.206 1.206 25 H -0.227 1.227 26 H -0.195 1.195 27 C 0.054 3.946 28 O -0.075 6.075 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.249 0.751 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 5.246 -19.009 2.740 19.909 hybrid contribution -0.706 1.202 -0.084 1.397 sum 4.540 -17.806 2.656 18.567 Atomic orbital electron populations 1.21811 0.92150 1.04705 1.02110 1.20578 0.97345 0.80798 1.07798 1.27756 0.94200 0.97712 0.77820 1.70365 1.19059 1.03536 1.30817 1.22338 0.96627 0.94605 0.91473 1.20382 1.02601 0.92756 0.97824 1.22683 1.14414 0.86694 0.95203 1.16547 0.77886 0.84439 0.82354 1.90873 1.49295 1.27959 1.74412 1.45817 1.66394 1.17662 1.04708 1.21693 0.98055 0.86668 0.91086 0.92008 1.21662 1.01730 0.98495 0.92704 1.21948 0.97804 0.95671 1.00168 1.20823 0.93631 0.95013 0.85790 0.96134 1.21736 1.00289 0.97316 0.99350 1.44310 1.74805 1.01852 1.11667 1.19474 1.08902 0.85116 1.24648 0.90658 1.25808 0.95133 1.00796 1.02944 1.70166 1.11690 1.37749 1.38529 0.85438 0.77863 0.80810 0.77419 1.20574 1.22686 1.19498 1.20735 0.91630 0.88396 0.93886 1.84421 1.63816 1.21448 1.37792 0.93045 0.92933 0.87688 0.85761 0.85361 0.90114 0.88411 0.90005 0.75121 0.89519 0.90942 0.88440 0.92594 0.93411 0.90253 0.94357 0.94676 0.93841 0.98591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 71.98 0.71 -0.96 16 2 C -0.03 -0.32 6.56 29.85 0.20 -0.13 16 3 C 0.23 5.38 7.57 88.29 0.67 6.04 16 4 N -0.51 -14.44 11.26 -291.06 -3.28 -17.71 16 5 C 0.07 2.35 7.16 41.83 0.30 2.65 16 6 C -0.08 -2.31 9.87 71.24 0.70 -1.60 16 7 C -0.14 -4.52 7.18 24.05 0.17 -4.34 16 8 C 0.60 23.23 7.75 86.46 0.67 23.91 16 9 O -0.55 -25.14 14.46 -4.33 -0.06 -25.20 16 10 N -0.70 -24.03 5.08 -446.08 -2.27 -26.29 16 11 C 0.13 5.10 2.60 45.07 0.12 5.22 16 12 H 0.06 2.74 7.58 -2.39 -0.02 2.72 16 13 C -0.11 -3.18 5.35 30.62 0.16 -3.02 16 14 C -0.12 -3.56 5.37 30.67 0.16 -3.39 16 15 C 0.15 6.01 3.50 44.98 0.16 6.17 16 16 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 17 C -0.13 -4.61 7.95 71.98 0.57 -4.03 16 18 N -0.60 -30.44 2.99 -675.21 -2.02 -32.46 16 19 C -0.25 -14.03 8.57 84.04 0.72 -13.31 16 20 H 0.08 4.04 6.24 -2.91 -0.02 4.02 16 21 C -0.05 -3.03 4.94 84.86 0.42 -2.61 16 22 N -0.93 -58.32 11.23 21.65 0.24 -58.08 16 23 Si 0.96 47.46 29.58 68.60 2.03 49.49 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.30 -15.26 7.11 99.48 0.71 -14.56 16 26 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 27 C 0.18 9.10 4.86 86.37 0.42 9.51 16 28 O -0.19 -5.14 10.57 -7.04 -0.07 -5.21 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.08 2.66 6.47 -2.39 -0.02 2.64 16 37 H 0.41 11.47 8.40 -92.71 -0.78 10.69 16 38 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.74 7.44 -2.39 -0.02 1.72 16 43 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.04 1.51 7.63 -2.39 -0.02 1.50 16 45 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 46 H 0.04 2.62 6.15 -2.39 -0.01 2.61 16 47 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 Total: -1.00 -76.33 377.82 0.93 -75.40 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.20 Total: 19.95 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 6.16 Total: 20.11 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -7.31 Total: -134.54 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.14 Total: -30.41 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -76.33 0.93 -75.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071962993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.019 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds