Wall clock time and date at job start Tue Mar 31 2020 13:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47221 * 2 1 4 4 N 1.30620 * 125.42162 * 89.97595 * 3 2 1 5 5 C 1.33690 * 108.99180 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.26813 * 180.02562 * 5 4 3 7 7 C 1.36341 * 107.45655 * 359.97438 * 5 4 3 8 8 C 1.46718 * 126.64582 * 179.97438 * 7 5 4 9 9 O 1.21688 * 119.99867 * 0.02562 * 8 7 5 10 10 N 1.34774 * 120.00435 * 179.97438 * 8 7 5 11 11 C 1.46500 * 120.00551 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.51629 * 34.92175 * 11 10 8 13 13 C 1.53033 * 109.49609 * 155.00180 * 11 10 8 14 14 C 1.53043 * 109.52933 * 58.58502 * 13 11 10 15 15 C 1.53193 * 109.31252 * 61.36572 * 14 13 11 16 16 H 1.09003 * 109.58502 * 65.29705 * 15 14 13 17 17 C 1.52998 * 109.58364 * 185.57601 * 15 14 13 18 18 N 1.46915 * 108.77640 * 305.36989 * 15 14 13 19 19 C 1.36939 * 120.63186 * 233.63098 * 18 15 14 20 20 H 1.07999 * 119.99768 * 29.00562 * 19 18 15 21 21 C 1.38813 * 120.00233 * 209.01719 * 19 18 15 22 22 N 1.31616 * 120.00052 * 15.00077 * 21 19 18 23 23 Si 1.86800 * 119.99664 * 195.01294 * 21 19 18 24 24 H 1.48498 * 109.47504 * 59.99631 * 23 21 19 25 25 H 1.48509 * 109.46746 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47155 * 299.99245 * 23 21 19 27 27 C 1.46922 * 118.74396 * 53.60673 * 18 15 14 28 28 O 1.33662 * 125.42143 * 270.28671 * 3 2 1 29 29 H 1.09002 * 109.46897 * 60.00119 * 1 2 3 30 30 H 1.08998 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47629 * 300.00130 * 1 2 3 32 32 H 1.08998 * 109.47629 * 239.99869 * 2 1 3 33 33 H 1.09002 * 109.46897 * 119.99881 * 2 1 3 34 34 H 1.09005 * 109.46992 * 269.95042 * 6 5 4 35 35 H 1.08990 * 109.47467 * 29.96036 * 6 5 4 36 36 H 1.09006 * 109.46876 * 149.96043 * 6 5 4 37 37 H 0.97005 * 119.99741 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.46479 * 298.56617 * 13 11 10 39 39 H 1.09004 * 109.45895 * 178.59382 * 13 11 10 40 40 H 1.09001 * 109.49651 * 181.32305 * 14 13 11 41 41 H 1.08999 * 109.49667 * 301.41739 * 14 13 11 42 42 H 1.09005 * 109.46769 * 60.00720 * 17 15 14 43 43 H 1.09000 * 109.46626 * 179.97438 * 17 15 14 44 44 H 1.08998 * 109.47831 * 300.00249 * 17 15 14 45 45 H 0.96997 * 119.99694 * 179.97438 * 22 21 19 46 46 H 1.09008 * 109.59000 * 66.17531 * 27 18 15 47 47 H 1.09003 * 109.59266 * 186.60331 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2843 2.1347 1.0644 5 6 2.7124 3.3435 0.6863 6 6 3.1123 4.4735 1.5996 7 6 2.7220 3.3660 -0.6769 8 6 3.1202 4.4902 -1.5314 9 8 3.4894 5.5353 -1.0290 10 7 3.0782 4.3652 -2.8726 11 6 3.4753 5.4879 -3.7259 12 1 4.2909 6.0345 -3.2523 13 6 3.9369 4.9580 -5.0853 14 6 2.8031 4.1625 -5.7361 15 6 1.6005 5.0847 -5.9597 16 1 1.8606 5.8548 -6.6859 17 6 0.4170 4.2671 -6.4809 18 7 1.2410 5.7115 -4.6805 19 6 -0.0387 5.6313 -4.1995 20 1 -0.6574 4.7823 -4.4498 21 6 -0.5406 6.6415 -3.3904 22 7 0.0808 7.7996 -3.3217 23 14 -2.0980 6.3568 -2.3989 24 1 -1.8903 5.2200 -1.4663 25 1 -2.4210 7.5809 -1.6224 26 1 -3.2204 6.0434 -3.3193 27 6 2.2805 6.4254 -3.9267 28 8 2.2854 2.1530 -1.0892 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2402 5.0895 1.8188 35 1 3.5122 4.0662 2.5281 36 1 3.8739 5.0824 1.1122 37 1 2.7843 3.5320 -3.2731 38 1 4.8026 4.3101 -4.9476 39 1 4.2086 5.7953 -5.7282 40 1 3.1402 3.7655 -6.6937 41 1 2.5139 3.3397 -5.0822 42 1 0.1552 3.5009 -5.7510 43 1 -0.4376 4.9250 -6.6388 44 1 0.6900 3.7928 -7.4235 45 1 -0.2702 8.5056 -2.7567 46 1 2.5970 7.3064 -4.4852 47 1 1.8861 6.7276 -2.9565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071962995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:59 Heat of formation + Delta-G solvation = -4.482339 kcal Electronic energy + Delta-G solvation = -28994.712063 eV Core-core repulsion = 25179.434674 eV Total energy + Delta-G solvation = -3815.277389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -43.30029 -39.45310 -37.60379 -35.29365 -34.32616 -34.08059 -32.75844 -31.05316 -30.43703 -29.89196 -27.61558 -26.19198 -25.10971 -24.69425 -22.23599 -22.02912 -21.42228 -20.59007 -20.32435 -18.76776 -17.99742 -16.84418 -16.35663 -15.90747 -15.47222 -15.12193 -14.70386 -14.37435 -14.21536 -13.94669 -13.89452 -13.55977 -13.25350 -13.10230 -13.03826 -12.76529 -12.73600 -12.50010 -12.16808 -11.94676 -11.85252 -11.41488 -11.26882 -11.18665 -10.98429 -10.91818 -10.86525 -10.72488 -10.69766 -10.40474 -10.35791 -9.97805 -9.73660 -9.51744 -9.47953 -8.74538 -8.45735 -8.37577 -6.61489 -5.75548 -3.19504 1.02824 2.50283 2.55136 3.37538 3.44383 3.45171 3.45284 3.63572 3.93780 4.49673 4.74362 4.83645 4.91732 5.01834 5.18789 5.28650 5.33456 5.39747 5.48334 5.52064 5.57343 5.58074 5.64741 5.77538 5.84041 5.95885 5.97850 6.01060 6.07351 6.09502 6.12191 6.30128 6.32817 6.40777 6.45356 6.48298 6.57934 6.63418 6.83273 7.02300 7.09262 7.32903 7.61518 7.69530 7.82661 7.98406 8.48128 8.55527 9.22977 9.87248 10.42885 11.32478 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010145 B = 0.005332 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.285885 B = 5250.078472 C = 5712.042049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.026 4.026 3 C 0.209 3.791 4 N -0.487 5.487 5 C 0.068 3.932 6 C -0.077 4.077 7 C -0.100 4.100 8 C 0.606 3.394 9 O -0.520 6.520 10 N -0.685 5.685 11 C 0.117 3.883 12 H 0.080 0.920 13 C -0.118 4.118 14 C -0.131 4.131 15 C 0.165 3.835 16 H 0.026 0.974 17 C -0.136 4.136 18 N -0.582 5.582 19 C -0.251 4.251 20 H 0.067 0.933 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.895 3.105 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.161 3.839 28 O -0.185 6.185 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.399 0.601 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.037 0.963 45 H 0.254 0.746 46 H 0.028 0.972 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 -13.827 2.244 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.064 4.064 3 C 0.003 3.997 4 N -0.218 5.218 5 C -0.056 4.056 6 C -0.134 4.134 7 C -0.155 4.155 8 C 0.390 3.610 9 O -0.398 6.398 10 N -0.334 5.334 11 C 0.011 3.989 12 H 0.098 0.902 13 C -0.156 4.156 14 C -0.171 4.171 15 C 0.059 3.941 16 H 0.043 0.957 17 C -0.193 4.193 18 N -0.306 5.306 19 C -0.380 4.380 20 H 0.085 0.915 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.725 3.275 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.034 3.966 28 O -0.072 6.072 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.235 0.765 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.508 -13.135 3.188 15.002 hybrid contribution -1.031 -0.254 -0.346 1.117 sum 5.476 -13.389 2.842 14.742 Atomic orbital electron populations 1.21803 0.92804 1.02980 1.03487 1.20117 0.97100 0.84010 1.05193 1.26455 0.97746 0.96624 0.78869 1.70269 1.17753 1.03755 1.29995 1.21994 0.98232 0.93920 0.91421 1.20347 1.02971 0.93085 0.97044 1.23186 1.10851 0.86129 0.95338 1.16225 0.78521 0.84206 0.82011 1.90829 1.48810 1.26309 1.73882 1.45779 1.65423 1.17562 1.04650 1.21912 0.99749 0.88220 0.89007 0.90233 1.21692 0.97509 1.00264 0.96178 1.22080 0.97015 0.98791 0.99202 1.20461 0.92040 0.92796 0.88848 0.95664 1.21795 0.99196 0.99828 0.98496 1.44028 1.06455 1.62813 1.17264 1.19031 0.89904 1.01953 1.27130 0.91542 1.25034 0.97723 0.94743 1.01717 1.69958 1.40848 1.02762 1.40739 0.86489 0.83539 0.77059 0.80391 1.21308 1.21560 1.20912 1.21217 0.85877 0.90295 0.99192 1.84441 1.63235 1.22341 1.37172 0.91719 0.90802 0.91673 0.88695 0.87559 0.90110 0.90923 0.88601 0.76528 0.92957 0.90845 0.92745 0.92755 0.92995 0.92050 0.94397 0.93575 0.95388 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.03 -0.24 6.56 -27.88 -0.18 -0.43 16 3 C 0.21 3.03 7.57 -12.79 -0.10 2.93 16 4 N -0.49 -7.97 11.26 -7.07 -0.08 -8.05 16 5 C 0.07 1.19 7.16 -82.47 -0.59 0.60 16 6 C -0.08 -1.18 9.87 36.01 0.36 -0.83 16 7 C -0.10 -1.84 7.18 -36.84 -0.26 -2.10 16 8 C 0.61 12.08 7.76 -12.84 -0.10 11.98 16 9 O -0.52 -11.39 14.46 5.20 0.08 -11.32 16 10 N -0.68 -12.76 4.91 -54.99 -0.27 -13.03 16 11 C 0.12 2.20 2.81 -67.81 -0.19 2.01 16 12 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 13 C -0.12 -1.84 5.59 -26.69 -0.15 -1.99 16 14 C -0.13 -2.08 5.21 -26.61 -0.14 -2.22 16 15 C 0.17 3.22 3.50 -67.61 -0.24 2.99 16 16 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 17 C -0.14 -2.45 7.95 37.16 0.30 -2.15 16 18 N -0.58 -13.76 2.91 -164.78 -0.48 -14.23 16 19 C -0.25 -6.62 8.61 -15.06 -0.13 -6.75 16 20 H 0.07 1.73 6.20 -52.49 -0.33 1.40 16 21 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 22 N -0.90 -26.31 11.14 55.49 0.62 -25.69 16 23 Si 0.90 22.29 29.58 -169.99 -5.03 17.26 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.16 3.78 4.89 -3.71 -0.02 3.77 16 28 O -0.19 -3.07 10.57 4.42 0.05 -3.03 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.52 6.47 -51.93 -0.34 1.18 16 37 H 0.40 6.96 6.57 -40.82 -0.27 6.69 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.87 6.40 -51.93 -0.33 0.53 16 42 H 0.05 0.95 7.40 -51.93 -0.38 0.56 16 43 H 0.06 1.21 7.66 -51.93 -0.40 0.82 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 47 H 0.10 2.74 6.06 -51.93 -0.31 2.42 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -31.70 374.12 -8.03 -39.73 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.38 Total: 5.82 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.16 Total: 6.90 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.21 Total: -61.00 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.12 Total: -14.34 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.70 -8.03 -39.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071962995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.247 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds