Wall clock time and date at job start Tue Mar 31 2020 13:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47371 * 2 1 4 4 N 1.30614 * 125.42328 * 90.02367 * 3 2 1 5 5 C 1.33694 * 108.99455 * 179.70844 * 4 3 2 6 6 C 1.50699 * 126.27465 * 180.26894 * 5 4 3 7 7 C 1.36342 * 107.45152 * 0.43154 * 5 4 3 8 8 C 1.46724 * 126.64502 * 179.84003 * 7 5 4 9 9 O 1.21685 * 119.99626 * 359.71472 * 8 7 5 10 10 N 1.34771 * 120.00204 * 179.70803 * 8 7 5 11 11 C 1.46498 * 120.00055 * 179.97438 * 10 8 7 12 12 H 1.08992 * 110.78168 * 323.22208 * 11 10 8 13 13 C 1.55157 * 110.71823 * 86.45755 * 11 10 8 14 14 C 1.54903 * 101.58240 * 153.86323 * 13 11 10 15 15 N 1.47422 * 104.83627 * 322.99337 * 14 13 11 16 16 C 1.36931 * 125.65163 * 204.09115 * 15 14 13 17 17 H 1.08000 * 120.00156 * 154.01205 * 16 15 14 18 18 C 1.38810 * 120.00109 * 334.01633 * 16 15 14 19 19 N 1.31625 * 119.99544 * 334.83488 * 18 16 15 20 20 Si 1.86797 * 120.00288 * 154.83946 * 18 16 15 21 21 H 1.48501 * 109.47160 * 59.99892 * 20 18 16 22 22 H 1.48495 * 109.47190 * 299.99575 * 20 18 16 23 23 H 1.48506 * 109.47246 * 179.97438 * 20 18 16 24 24 C 1.47024 * 108.70034 * 24.35004 * 15 14 13 25 25 H 1.08994 * 109.88440 * 239.29939 * 24 15 14 26 26 C 1.53004 * 109.87775 * 118.13425 * 24 15 14 27 27 C 1.52997 * 109.47278 * 65.71943 * 26 24 15 28 28 O 1.33660 * 125.42180 * 270.00025 * 3 2 1 29 29 H 1.08993 * 109.47507 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46883 * 300.00568 * 1 2 3 31 31 H 1.09007 * 109.47101 * 59.99893 * 1 2 3 32 32 H 1.08998 * 109.47119 * 239.99567 * 2 1 3 33 33 H 1.09001 * 109.46870 * 119.99418 * 2 1 3 34 34 H 1.09001 * 109.46920 * 270.19501 * 6 5 4 35 35 H 1.09001 * 109.47220 * 30.18378 * 6 5 4 36 36 H 1.08998 * 109.46995 * 150.19097 * 6 5 4 37 37 H 0.96996 * 119.99852 * 0.02562 * 10 8 7 38 38 H 1.09007 * 111.00612 * 35.79043 * 13 11 10 39 39 H 1.09004 * 111.00567 * 271.93936 * 13 11 10 40 40 H 1.09002 * 110.37204 * 204.15080 * 14 13 11 41 41 H 1.09011 * 110.36743 * 81.83069 * 14 13 11 42 42 H 0.96996 * 120.00054 * 353.73502 * 19 18 16 43 43 H 1.09008 * 109.47016 * 185.71756 * 26 24 15 44 44 H 1.08995 * 109.47094 * 305.71542 * 26 24 15 45 45 H 1.08994 * 109.46986 * 291.79469 * 27 26 24 46 46 H 1.09004 * 109.47097 * 51.78906 * 27 26 24 47 47 H 1.08996 * 109.47405 * 171.79113 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2852 2.1344 1.0644 5 6 2.7186 3.3413 0.6863 6 6 3.1262 4.4688 1.5994 7 6 2.7209 3.3664 -0.6769 8 6 3.1187 4.4908 -1.5315 9 8 3.4891 5.5354 -1.0291 10 7 3.0740 4.3666 -2.8727 11 6 3.4707 5.4895 -3.7259 12 1 3.1590 6.4374 -3.2873 13 6 5.0023 5.4765 -3.9735 14 6 5.1041 6.2146 -5.3316 15 7 3.9245 5.7667 -6.0940 16 6 3.8112 5.7611 -7.4586 17 1 3.1401 5.0665 -7.9419 18 6 4.5588 6.6482 -8.2208 19 7 4.9750 7.7802 -7.6935 20 14 4.9742 6.2356 -9.9946 21 1 3.7193 6.0655 -10.7702 22 1 5.7583 4.9753 -10.0391 23 1 5.7748 7.3383 -10.5850 24 6 2.8876 5.3330 -5.1462 25 1 2.6331 4.2887 -5.3275 26 6 1.6427 6.2092 -5.3001 27 6 1.0235 5.9777 -6.6799 28 8 2.2907 2.1512 -1.0892 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2567 5.0865 1.8244 35 1 3.5297 4.0587 2.5252 36 1 3.8867 5.0765 1.1092 37 1 2.7785 3.5340 -3.2731 38 1 5.3764 4.4558 -4.0546 39 1 5.5292 6.0230 -3.1913 40 1 6.0205 5.9315 -5.8495 41 1 5.0708 7.2936 -5.1803 42 1 4.6844 8.0369 -6.8045 43 1 0.9180 5.9495 -4.5284 44 1 1.9218 7.2579 -5.1984 45 1 1.6892 6.3720 -7.4476 46 1 0.8787 4.9091 -6.8386 47 1 0.0616 6.4871 -6.7366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087783959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:03 Heat of formation + Delta-G solvation = -7.457680 kcal Electronic energy + Delta-G solvation = -27778.257713 eV Core-core repulsion = 23962.851303 eV Total energy + Delta-G solvation = -3815.406410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.66366 -39.79734 -37.95683 -35.65013 -34.58986 -34.27035 -32.62086 -32.03024 -30.97887 -28.92010 -27.94039 -26.79403 -25.24053 -24.32395 -22.35976 -21.77750 -21.68030 -20.78259 -20.35014 -19.67161 -18.09351 -17.38771 -17.20745 -16.29416 -16.13520 -15.19119 -14.82939 -14.59851 -14.54103 -14.23547 -13.89402 -13.61817 -13.44963 -13.32055 -13.19640 -13.00580 -12.93396 -12.47691 -12.45129 -12.19877 -12.11949 -11.70146 -11.66996 -11.20369 -11.13636 -11.05581 -10.96832 -10.78933 -10.54864 -10.34138 -10.17545 -10.10484 -10.00631 -9.87552 -9.45292 -9.14136 -8.78410 -8.42693 -6.94366 -6.08214 -3.25439 0.63284 2.15670 2.17656 3.01743 3.10163 3.46775 3.50640 3.58939 3.68339 4.43724 4.48101 4.55342 4.64982 4.69797 4.86245 5.06061 5.24646 5.26105 5.27541 5.30784 5.33412 5.37994 5.45784 5.51439 5.63695 5.65886 5.69626 5.77372 5.88537 5.93106 5.98209 6.11184 6.12879 6.22496 6.31288 6.43930 6.53947 6.61373 6.71597 6.90731 6.99246 7.05863 7.27351 7.30901 7.50895 7.83471 8.04431 8.46387 8.98415 9.76064 10.34142 11.19585 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019192 B = 0.002985 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.628945 B = 9376.442200 C = 9994.089958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.030 4.030 3 C 0.219 3.781 4 N -0.488 5.488 5 C 0.078 3.922 6 C -0.080 4.080 7 C -0.114 4.114 8 C 0.607 3.393 9 O -0.515 6.515 10 N -0.701 5.701 11 C 0.134 3.866 12 H 0.097 0.903 13 C -0.144 4.144 14 C 0.144 3.856 15 N -0.589 5.589 16 C -0.327 4.327 17 H 0.063 0.937 18 C -0.023 4.023 19 N -0.912 5.912 20 Si 1.064 2.936 21 H -0.292 1.292 22 H -0.294 1.294 23 H -0.286 1.286 24 C 0.157 3.843 25 H 0.037 0.963 26 C -0.123 4.123 27 C -0.149 4.149 28 O -0.187 6.187 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.403 0.597 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.031 0.969 42 H 0.270 0.730 43 H 0.038 0.962 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.038 0.962 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 -13.528 15.393 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.068 4.068 3 C 0.013 3.987 4 N -0.218 5.218 5 C -0.046 4.046 6 C -0.137 4.137 7 C -0.169 4.169 8 C 0.392 3.608 9 O -0.392 6.392 10 N -0.351 5.351 11 C 0.030 3.970 12 H 0.115 0.885 13 C -0.184 4.184 14 C 0.018 3.982 15 N -0.315 5.315 16 C -0.455 4.455 17 H 0.081 0.919 18 C -0.226 4.226 19 N -0.552 5.552 20 Si 0.894 3.106 21 H -0.219 1.219 22 H -0.221 1.221 23 H -0.211 1.211 24 C 0.049 3.951 25 H 0.055 0.945 26 C -0.163 4.163 27 C -0.206 4.206 28 O -0.074 6.074 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.238 0.762 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.057 0.943 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.088 -12.487 14.806 20.303 hybrid contribution -1.060 -0.764 0.476 1.391 sum -7.148 -13.252 15.283 21.454 Atomic orbital electron populations 1.21796 0.92675 1.03258 1.03205 1.20189 0.97158 0.83820 1.05625 1.26565 0.96824 0.96628 0.78678 1.70329 1.17773 1.03742 1.29925 1.22065 0.97265 0.93950 0.91295 1.20390 1.02874 0.93098 0.97363 1.23032 1.12421 0.86210 0.95279 1.16295 0.78225 0.84482 0.81768 1.90856 1.47999 1.26569 1.73821 1.45976 1.66223 1.17808 1.05054 1.22211 0.95478 0.88849 0.90473 0.88533 1.23210 0.94743 1.01276 0.99153 1.21555 0.91670 0.96167 0.88814 1.44503 1.08627 1.77002 1.01394 1.19596 1.29400 1.16944 0.79563 0.91903 1.25842 0.99443 0.92504 1.04791 1.70765 1.46901 1.18912 1.18577 0.83533 0.76361 0.75495 0.75220 1.21945 1.22081 1.21109 1.21192 0.89984 0.96727 0.87153 0.94543 1.21888 0.96844 1.00538 0.96981 1.21885 0.99416 1.00107 0.99162 1.84447 1.63501 1.22113 1.37305 0.90590 0.91651 0.91906 0.88413 0.87284 0.90023 0.90550 0.88508 0.76216 0.91564 0.91323 0.93020 0.95112 0.91844 0.94326 0.92447 0.88901 0.94313 0.95172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.90 37.16 0.37 -0.47 16 2 C -0.03 -0.19 6.56 -27.88 -0.18 -0.37 16 3 C 0.22 2.40 7.57 -12.79 -0.10 2.30 16 4 N -0.49 -6.23 11.26 -7.07 -0.08 -6.31 16 5 C 0.08 1.06 7.16 -82.46 -0.59 0.47 16 6 C -0.08 -0.92 9.87 36.01 0.36 -0.56 16 7 C -0.11 -1.61 7.18 -36.84 -0.26 -1.88 16 8 C 0.61 9.47 7.79 -12.84 -0.10 9.37 16 9 O -0.51 -9.07 14.53 5.20 0.08 -8.99 16 10 N -0.70 -10.62 5.20 -53.32 -0.28 -10.89 16 11 C 0.13 2.37 2.76 -66.09 -0.18 2.19 16 12 H 0.10 1.81 7.40 -51.93 -0.38 1.43 16 13 C -0.14 -2.67 6.77 -24.59 -0.17 -2.84 16 14 C 0.14 3.24 5.56 -2.53 -0.01 3.23 16 15 N -0.59 -13.96 2.92 -162.57 -0.47 -14.43 16 16 C -0.33 -8.56 7.22 -15.06 -0.11 -8.67 16 17 H 0.06 1.65 7.24 -52.49 -0.38 1.27 16 18 C -0.02 -0.62 5.17 -17.43 -0.09 -0.71 16 19 N -0.91 -26.61 13.05 55.49 0.72 -25.88 16 20 Si 1.06 24.58 29.99 -169.99 -5.10 19.48 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.16 3.09 3.00 -66.95 -0.20 2.89 16 25 H 0.04 0.72 7.69 -51.93 -0.40 0.32 16 26 C -0.12 -2.36 5.47 -26.73 -0.15 -2.50 16 27 C -0.15 -2.89 8.98 37.16 0.33 -2.55 16 28 O -0.19 -2.35 10.57 4.44 0.05 -2.30 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.20 6.47 -51.93 -0.34 0.86 16 37 H 0.40 5.45 8.11 -40.82 -0.33 5.11 16 38 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.03 0.75 6.73 -51.92 -0.35 0.40 16 42 H 0.27 7.93 6.20 -40.82 -0.25 7.68 16 43 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.09 2.13 5.52 -51.93 -0.29 1.84 16 46 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -31.03 379.13 -7.89 -38.92 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.43 Total: 4.83 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.09 Total: -0.12 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.11 Total: -57.52 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.12 Total: -11.30 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.10 Total: 19.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.03 -7.89 -38.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087783959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.459 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds