Wall clock time and date at job start Tue Mar 31 2020 13:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47371 * 2 1 4 4 N 1.30614 * 125.42328 * 90.02367 * 3 2 1 5 5 C 1.33694 * 108.99455 * 179.70844 * 4 3 2 6 6 C 1.50699 * 126.27465 * 180.26894 * 5 4 3 7 7 C 1.36342 * 107.45152 * 0.43154 * 5 4 3 8 8 C 1.46724 * 126.64502 * 179.84003 * 7 5 4 9 9 O 1.21685 * 119.99626 * 359.71472 * 8 7 5 10 10 N 1.34771 * 120.00204 * 179.70803 * 8 7 5 11 11 C 1.46498 * 120.00055 * 179.97438 * 10 8 7 12 12 H 1.08992 * 110.78168 * 323.22208 * 11 10 8 13 13 C 1.55157 * 110.71823 * 86.45755 * 11 10 8 14 14 C 1.54903 * 101.58240 * 153.86323 * 13 11 10 15 15 N 1.47422 * 104.83627 * 322.99337 * 14 13 11 16 16 C 1.36931 * 125.65163 * 204.09115 * 15 14 13 17 17 H 1.08000 * 120.00156 * 154.01205 * 16 15 14 18 18 C 1.38810 * 120.00109 * 334.01633 * 16 15 14 19 19 N 1.31625 * 119.99544 * 334.83488 * 18 16 15 20 20 Si 1.86797 * 120.00288 * 154.83946 * 18 16 15 21 21 H 1.48501 * 109.47160 * 59.99892 * 20 18 16 22 22 H 1.48495 * 109.47190 * 299.99575 * 20 18 16 23 23 H 1.48506 * 109.47246 * 179.97438 * 20 18 16 24 24 C 1.47024 * 108.70034 * 24.35004 * 15 14 13 25 25 H 1.08994 * 109.88440 * 239.29939 * 24 15 14 26 26 C 1.53004 * 109.87775 * 118.13425 * 24 15 14 27 27 C 1.52997 * 109.47278 * 65.71943 * 26 24 15 28 28 O 1.33660 * 125.42180 * 270.00025 * 3 2 1 29 29 H 1.08993 * 109.47507 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46883 * 300.00568 * 1 2 3 31 31 H 1.09007 * 109.47101 * 59.99893 * 1 2 3 32 32 H 1.08998 * 109.47119 * 239.99567 * 2 1 3 33 33 H 1.09001 * 109.46870 * 119.99418 * 2 1 3 34 34 H 1.09001 * 109.46920 * 270.19501 * 6 5 4 35 35 H 1.09001 * 109.47220 * 30.18378 * 6 5 4 36 36 H 1.08998 * 109.46995 * 150.19097 * 6 5 4 37 37 H 0.96996 * 119.99852 * 0.02562 * 10 8 7 38 38 H 1.09007 * 111.00612 * 35.79043 * 13 11 10 39 39 H 1.09004 * 111.00567 * 271.93936 * 13 11 10 40 40 H 1.09002 * 110.37204 * 204.15080 * 14 13 11 41 41 H 1.09011 * 110.36743 * 81.83069 * 14 13 11 42 42 H 0.96996 * 120.00054 * 353.73502 * 19 18 16 43 43 H 1.09008 * 109.47016 * 185.71756 * 26 24 15 44 44 H 1.08995 * 109.47094 * 305.71542 * 26 24 15 45 45 H 1.08994 * 109.46986 * 291.79469 * 27 26 24 46 46 H 1.09004 * 109.47097 * 51.78906 * 27 26 24 47 47 H 1.08996 * 109.47405 * 171.79113 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2852 2.1344 1.0644 5 6 2.7186 3.3413 0.6863 6 6 3.1262 4.4688 1.5994 7 6 2.7209 3.3664 -0.6769 8 6 3.1187 4.4908 -1.5315 9 8 3.4891 5.5354 -1.0291 10 7 3.0740 4.3666 -2.8727 11 6 3.4707 5.4895 -3.7259 12 1 3.1590 6.4374 -3.2873 13 6 5.0023 5.4765 -3.9735 14 6 5.1041 6.2146 -5.3316 15 7 3.9245 5.7667 -6.0940 16 6 3.8112 5.7611 -7.4586 17 1 3.1401 5.0665 -7.9419 18 6 4.5588 6.6482 -8.2208 19 7 4.9750 7.7802 -7.6935 20 14 4.9742 6.2356 -9.9946 21 1 3.7193 6.0655 -10.7702 22 1 5.7583 4.9753 -10.0391 23 1 5.7748 7.3383 -10.5850 24 6 2.8876 5.3330 -5.1462 25 1 2.6331 4.2887 -5.3275 26 6 1.6427 6.2092 -5.3001 27 6 1.0235 5.9777 -6.6799 28 8 2.2907 2.1512 -1.0892 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2567 5.0865 1.8244 35 1 3.5297 4.0587 2.5252 36 1 3.8867 5.0765 1.1092 37 1 2.7785 3.5340 -3.2731 38 1 5.3764 4.4558 -4.0546 39 1 5.5292 6.0230 -3.1913 40 1 6.0205 5.9315 -5.8495 41 1 5.0708 7.2936 -5.1803 42 1 4.6844 8.0369 -6.8045 43 1 0.9180 5.9495 -4.5284 44 1 1.9218 7.2579 -5.1984 45 1 1.6892 6.3720 -7.4476 46 1 0.8787 4.9091 -6.8386 47 1 0.0616 6.4871 -6.7366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087783959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:02 Heat of formation + Delta-G solvation = -28.680358 kcal Electronic energy + Delta-G solvation = -27779.177997 eV Core-core repulsion = 23962.851303 eV Total energy + Delta-G solvation = -3816.326694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.60715 -41.15730 -39.52154 -36.65034 -35.78590 -35.20143 -34.32999 -33.70983 -31.87019 -30.60812 -29.21195 -28.21237 -26.45200 -25.69655 -23.73739 -23.15261 -22.60479 -21.96452 -21.79288 -21.25452 -19.45667 -19.16367 -18.16406 -17.74798 -17.01107 -16.37096 -16.24481 -15.86630 -15.67410 -15.60437 -15.32469 -15.03447 -14.82926 -14.64441 -14.34683 -14.20718 -14.06505 -13.77721 -13.60971 -13.40643 -13.28903 -12.86779 -12.69270 -12.63992 -12.53668 -12.23464 -12.19357 -12.10865 -11.97475 -11.92247 -11.88271 -11.77402 -11.59821 -11.40108 -11.30837 -10.44856 -10.37995 -9.90549 -8.93975 -8.18558 -5.33625 -0.37458 1.20081 1.22624 1.60105 1.67143 1.84977 1.85580 1.92027 2.67112 2.76956 3.25319 3.38063 3.55334 3.59788 3.66690 3.71109 4.04523 4.11598 4.15838 4.19139 4.24205 4.34468 4.37556 4.40165 4.52819 4.56556 4.62531 4.63905 4.74262 4.81020 4.89302 4.92499 4.94851 4.96188 5.00667 5.03394 5.09354 5.17705 5.22546 5.26770 5.31912 5.46360 5.62956 5.82789 6.16226 6.38876 6.46667 6.83291 6.95395 7.73763 8.34703 9.07818 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019192 B = 0.002985 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.628945 B = 9376.442200 C = 9994.089958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.031 4.031 3 C 0.233 3.767 4 N -0.509 5.509 5 C 0.079 3.921 6 C -0.079 4.079 7 C -0.140 4.140 8 C 0.612 3.388 9 O -0.540 6.540 10 N -0.693 5.693 11 C 0.151 3.849 12 H 0.087 0.913 13 C -0.129 4.129 14 C 0.148 3.852 15 N -0.606 5.606 16 C -0.316 4.316 17 H 0.064 0.936 18 C -0.078 4.078 19 N -0.947 5.947 20 Si 1.110 2.890 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.298 1.298 24 C 0.156 3.844 25 H 0.049 0.951 26 C -0.119 4.119 27 C -0.142 4.142 28 O -0.190 6.190 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.007 0.993 42 H 0.255 0.745 43 H 0.067 0.933 44 H 0.033 0.967 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 -16.429 16.371 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C 0.028 3.972 4 N -0.239 5.239 5 C -0.045 4.045 6 C -0.136 4.136 7 C -0.194 4.194 8 C 0.398 3.602 9 O -0.419 6.419 10 N -0.343 5.343 11 C 0.046 3.954 12 H 0.105 0.895 13 C -0.168 4.168 14 C 0.022 3.978 15 N -0.332 5.332 16 C -0.444 4.444 17 H 0.082 0.918 18 C -0.274 4.274 19 N -0.590 5.590 20 Si 0.936 3.064 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.224 1.224 24 C 0.049 3.951 25 H 0.067 0.933 26 C -0.158 4.158 27 C -0.199 4.199 28 O -0.077 6.077 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.250 0.750 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.024 0.976 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.547 -15.436 15.807 23.347 hybrid contribution -0.716 0.013 0.291 0.773 sum -8.263 -15.423 16.098 23.776 Atomic orbital electron populations 1.21794 0.91866 1.04661 1.02283 1.20570 0.97615 0.81122 1.07567 1.27661 0.94093 0.97589 0.77848 1.70396 1.19083 1.03718 1.30660 1.22427 0.96120 0.94570 0.91417 1.20424 1.02900 0.92671 0.97601 1.22632 1.14934 0.86730 0.95138 1.16385 0.77515 0.84619 0.81644 1.90844 1.49075 1.27750 1.74245 1.45736 1.66343 1.17424 1.04806 1.21813 0.94449 0.89433 0.89714 0.89530 1.23060 0.95761 1.01251 0.96739 1.21394 0.90468 0.95258 0.90643 1.44710 1.10324 1.76695 1.01490 1.19787 1.28084 1.15644 0.80926 0.91842 1.27055 1.00145 0.92247 1.07998 1.70879 1.49210 1.20627 1.18255 0.82905 0.76776 0.75162 0.71586 1.19963 1.20777 1.22407 1.21297 0.89343 0.97085 0.87365 0.93291 1.21828 0.97176 0.98964 0.97882 1.21762 0.99504 1.00836 0.97825 1.84445 1.63767 1.21691 1.37842 0.88045 0.92685 0.92709 0.86237 0.85529 0.89180 0.88906 0.89697 0.74992 0.90493 0.90423 0.95535 0.97555 0.93483 0.91411 0.94780 0.92754 0.93124 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.90 71.98 0.71 -0.48 16 2 C -0.03 -0.29 6.56 29.85 0.20 -0.09 16 3 C 0.23 4.55 7.57 88.29 0.67 5.22 16 4 N -0.51 -12.01 11.26 -291.06 -3.28 -15.29 16 5 C 0.08 2.02 7.16 41.83 0.30 2.32 16 6 C -0.08 -1.72 9.87 71.24 0.70 -1.02 16 7 C -0.14 -3.75 7.18 24.05 0.17 -3.58 16 8 C 0.61 18.42 7.79 86.46 0.67 19.09 16 9 O -0.54 -18.76 14.53 -4.30 -0.06 -18.83 16 10 N -0.69 -19.90 5.20 -440.84 -2.29 -22.19 16 11 C 0.15 5.22 2.76 46.18 0.13 5.35 16 12 H 0.09 3.23 7.40 -2.39 -0.02 3.21 16 13 C -0.13 -4.73 6.77 31.98 0.22 -4.51 16 14 C 0.15 6.91 5.56 86.85 0.48 7.39 16 15 N -0.61 -29.06 2.92 -668.25 -1.95 -31.01 16 16 C -0.32 -16.69 7.22 84.03 0.61 -16.08 16 17 H 0.06 3.31 7.24 -2.91 -0.02 3.29 16 18 C -0.08 -4.33 5.17 84.86 0.44 -3.89 16 19 N -0.95 -57.39 13.05 21.65 0.28 -57.10 16 20 Si 1.11 50.17 29.99 68.60 2.06 52.23 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 24 C 0.16 5.99 3.00 45.35 0.14 6.13 16 25 H 0.05 1.81 7.69 -2.39 -0.02 1.79 16 26 C -0.12 -4.45 5.47 30.59 0.17 -4.28 16 27 C -0.14 -5.35 8.98 71.98 0.65 -4.70 16 28 O -0.19 -4.38 10.57 -7.03 -0.07 -4.46 16 29 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 2.07 6.47 -2.39 -0.02 2.06 16 37 H 0.41 10.25 8.11 -92.71 -0.75 9.50 16 38 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 39 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.01 0.34 6.73 -2.38 -0.02 0.32 16 42 H 0.25 15.76 6.20 -92.71 -0.57 15.18 16 43 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.05 2.48 5.52 -2.39 -0.01 2.47 16 46 H 0.05 1.75 8.13 -2.39 -0.02 1.74 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -68.76 379.13 1.35 -67.41 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.42 Total: 22.38 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.25 Total: 6.86 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -7.24 Total: -125.59 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.14 Total: -23.28 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.06 Total: 52.23 kcal Total: -68.76 1.35 -67.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087783959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.730 kcal (2) G-P(sol) polarization free energy of solvation -68.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds